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LOCUS HM635484 1302 bp RNA linear VRL 31-JUL-2011
DEFINITION HIV-1 clone 1306_120406 from Malawi pol protein (pol) gene, partial
cds
ACCESSION HM635484
VERSION HM635484.1 GI:338227748
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1302)
Show all sequences for reference 1
AUTHORS Fogel,J., Li,Q., Taha,T.E., Hoover,D.R., Kumwenda,N.I.,
Mofenson,L.M., Kumwenda,J.J., Fowler,M.G., Thigpen,M.C. and
Eshleman,S.H.
TITLE Initiation of antiretroviral treatment in women after delivery can
induce multiclass drug resistance in breastfeeding HIV-infected
infants.
JOURNAL Clin. Infect. Dis.. 52(8); 1069-76 (2011)
PUBMED 21460326
REFERENCE 2 (bases 1 to 1302)
Show all sequences for reference 2
AUTHORS Lidstrom,J., Li,Q., Taha,T.E., Hoover,D.R., Kumwenda,N.I.,
Mofenson,L.M., Kumwenda,J.J., Fowler,M.G., Thigpen,M.C. and
Eshleman,S.H.
TITLE Direct Submission
JOURNAL Submitted (07-JUL-2010) Pathology, Johns Hopkins Univ. School of
Medicine, 720 Rutland Ave., Ross Bldg 646, Baltimore, MD 21205, USA
FEATURES Location/Qualifiers
source 1..1302
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="1306"
/host="Homo sapiens"
/db_xref="taxon:11676"
/clone="1306_120406"
/country="Malawi"
/collection_date="04-Dec-2006"
gene <1..>1302
/gene="pol"
CDS <1..>1302
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="AEI90845.1"
/db_xref="GI:338227749"
/translation="PQITLWQRPLVTIKVEGQTREALLDTGADDTVLEEINLSGNWKP
KMIGGIGGFIKVRQYNDVTIEICGKKAIGTVLVGPTPVNIIGRNLLTQLGCTLNFLIS
PIETVPVKLKPGMDGPKVKQWPLTEEKIKALTAICEEMEKEGKITKIGPENPYNTPVF
AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
LDENFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRAQNPD
IVICQYMDDLYVGSDLEIEQHRAKVEELREHLLKWGFTTPDKKYQKEPPFLWMGYELH
PDKWTVQPIQLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVKQLCKLLRGTKALTDIV
PLTEEAELELAENREILRTPVHGAYYDPSKDLIAEIQKQGHD"
BASE COUNT 512 a 209 c 276 g 303 t 2 other
ORIGIN
1 cctcaaatca ctctttggca acgacccctt gtcacaataa aagtagaggg ccagacaagg
61 gaggctctct tagacacagg agcagatgat acagtattag aagaaataaa tttgtcagga
121 aattggaaac caaaaatgat agggggaatt ggaggtttta tcaaagtaag acagtataat
181 gatgtaacta tagaaatttg tggaaaaaag gctataggta cagtattagt gggacctaca
241 cctgtcaata taattggaag gaatctgttg actcagcttg gatgyactct aaattttcta
301 attagtccca ttgaaactgt accagtaaaa ttaaagccag gaatggatgg cccaaaggtt
361 aaacaatggc ccttgacaga agagaaaata aaagcattaa cagccatttg tgaagaaatg
421 gaaaaggaag gaaaaattac aaaaattggg cctgaaaatc catacaacac tccagtattt
481 gccataaaaa agaaggatag tactaagtgg agaaaattag tagatttcag agaactcaat
541 aaaagaactc aagacttttg ggaagttcaa ttaggaatac cacacccagc agggttaaaa
601 aagaaaaaat cagtgacagt actagatgtg ggggatgcat atttttcagt tcctttagat
661 gaaaacttca ggaaatatac tgcattcacc atacctagta taaacaatga aacaccaggg
721 attaggtatc aatataatgt gcttccgcaa ggatggaaag gatcaccagc aatattccag
781 agtagcatga caaaaatctt agagcctttt agggcacaaa atccagacat agtcatttgt
841 caatatatgg atgacttgta tgtaggatct gatttagaaa tagagcaaca tagagcaaaa
901 gtagaggagt taagagaaca tctattaaag tggggattta ctacaccaga taagaaatat
961 caaaaagaac ccccatttct ttggatgggg tatgaacttc atcctgacaa atggacagta
1021 cagcctatac agctgccaga aaaggatagc tggactgtca atgatataca gaagttagtg
1081 ggaaaattaa actgggcaag tcagatttac ccagggatta aagtaaagca actttgtaag
1141 ctccttaggg ggaccaaagc actaacagac atwgtaccac taactgaaga agcagaatta
1201 gaattagcag aaaacaggga aattctaaga acaccagtac atggagcata ttatgaccca
1261 tcaaaagact taatagctga aatacagaaa caggggcatg at
//
last modified: Tue May 31 10:56 2022