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LOCUS	    HM635484		    1302 bp    RNA     linear	VRL 31-JUL-2011
DEFINITION  HIV-1 clone 1306_120406 from Malawi pol protein (pol) gene, partial
	    cds
ACCESSION   HM635484
VERSION     HM635484.1 GI:338227748
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1302)
            Show all sequences for reference 1
  AUTHORS   Fogel,J., Li,Q., Taha,T.E., Hoover,D.R., Kumwenda,N.I.,
	    Mofenson,L.M., Kumwenda,J.J., Fowler,M.G., Thigpen,M.C. and
	    Eshleman,S.H.
  TITLE     Initiation of antiretroviral treatment in women after delivery can
	    induce multiclass drug resistance in breastfeeding HIV-infected
	    infants.
  JOURNAL   Clin. Infect. Dis.. 52(8); 1069-76 (2011)
  PUBMED    21460326
REFERENCE   2 (bases 1 to 1302)
            Show all sequences for reference 2
  AUTHORS   Lidstrom,J., Li,Q., Taha,T.E., Hoover,D.R., Kumwenda,N.I.,
	    Mofenson,L.M., Kumwenda,J.J., Fowler,M.G., Thigpen,M.C. and
	    Eshleman,S.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-JUL-2010) Pathology, Johns Hopkins Univ. School of
	    Medicine, 720 Rutland Ave., Ross Bldg 646, Baltimore, MD 21205, USA
FEATURES             Location/Qualifiers
     source	     1..1302
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="1306"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /clone="1306_120406"
		     /country="Malawi"
		     /collection_date="04-Dec-2006"
     gene	     <1..>1302
		     /gene="pol"
     CDS	     <1..>1302
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="AEI90845.1"
		     /db_xref="GI:338227749"
		     /translation="PQITLWQRPLVTIKVEGQTREALLDTGADDTVLEEINLSGNWKP
		     KMIGGIGGFIKVRQYNDVTIEICGKKAIGTVLVGPTPVNIIGRNLLTQLGCTLNFLIS
		     PIETVPVKLKPGMDGPKVKQWPLTEEKIKALTAICEEMEKEGKITKIGPENPYNTPVF
		     AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
		     LDENFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRAQNPD
		     IVICQYMDDLYVGSDLEIEQHRAKVEELREHLLKWGFTTPDKKYQKEPPFLWMGYELH
		     PDKWTVQPIQLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVKQLCKLLRGTKALTDIV
		     PLTEEAELELAENREILRTPVHGAYYDPSKDLIAEIQKQGHD"
BASE COUNT	512 a	 209 c	  276 g    303 t      2 other
ORIGIN
       1 cctcaaatca ctctttggca acgacccctt gtcacaataa aagtagaggg ccagacaagg 
      61 gaggctctct tagacacagg agcagatgat acagtattag aagaaataaa tttgtcagga 
     121 aattggaaac caaaaatgat agggggaatt ggaggtttta tcaaagtaag acagtataat 
     181 gatgtaacta tagaaatttg tggaaaaaag gctataggta cagtattagt gggacctaca 
     241 cctgtcaata taattggaag gaatctgttg actcagcttg gatgyactct aaattttcta 
     301 attagtccca ttgaaactgt accagtaaaa ttaaagccag gaatggatgg cccaaaggtt 
     361 aaacaatggc ccttgacaga agagaaaata aaagcattaa cagccatttg tgaagaaatg 
     421 gaaaaggaag gaaaaattac aaaaattggg cctgaaaatc catacaacac tccagtattt 
     481 gccataaaaa agaaggatag tactaagtgg agaaaattag tagatttcag agaactcaat 
     541 aaaagaactc aagacttttg ggaagttcaa ttaggaatac cacacccagc agggttaaaa 
     601 aagaaaaaat cagtgacagt actagatgtg ggggatgcat atttttcagt tcctttagat 
     661 gaaaacttca ggaaatatac tgcattcacc atacctagta taaacaatga aacaccaggg 
     721 attaggtatc aatataatgt gcttccgcaa ggatggaaag gatcaccagc aatattccag 
     781 agtagcatga caaaaatctt agagcctttt agggcacaaa atccagacat agtcatttgt 
     841 caatatatgg atgacttgta tgtaggatct gatttagaaa tagagcaaca tagagcaaaa 
     901 gtagaggagt taagagaaca tctattaaag tggggattta ctacaccaga taagaaatat 
     961 caaaaagaac ccccatttct ttggatgggg tatgaacttc atcctgacaa atggacagta 
    1021 cagcctatac agctgccaga aaaggatagc tggactgtca atgatataca gaagttagtg 
    1081 ggaaaattaa actgggcaag tcagatttac ccagggatta aagtaaagca actttgtaag 
    1141 ctccttaggg ggaccaaagc actaacagac atwgtaccac taactgaaga agcagaatta 
    1201 gaattagcag aaaacaggga aattctaaga acaccagtac atggagcata ttatgaccca 
    1261 tcaaaagact taatagctga aatacagaaa caggggcatg at
//
last modified: Tue May 31 10:56 2022


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