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LOCUS HM635482 1302 bp RNA linear VRL 31-JUL-2011
DEFINITION HIV-1 clone 1141_053006 from Malawi pol protein (pol) gene, partial
cds
ACCESSION HM635482
VERSION HM635482.1 GI:338227744
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1302)
Show all sequences for reference 1
AUTHORS Fogel,J., Li,Q., Taha,T.E., Hoover,D.R., Kumwenda,N.I.,
Mofenson,L.M., Kumwenda,J.J., Fowler,M.G., Thigpen,M.C. and
Eshleman,S.H.
TITLE Initiation of antiretroviral treatment in women after delivery can
induce multiclass drug resistance in breastfeeding HIV-infected
infants.
JOURNAL Clin. Infect. Dis.. 52(8); 1069-76 (2011)
PUBMED 21460326
REFERENCE 2 (bases 1 to 1302)
Show all sequences for reference 2
AUTHORS Lidstrom,J., Li,Q., Taha,T.E., Hoover,D.R., Kumwenda,N.I.,
Mofenson,L.M., Kumwenda,J.J., Fowler,M.G., Thigpen,M.C. and
Eshleman,S.H.
TITLE Direct Submission
JOURNAL Submitted (07-JUL-2010) Pathology, Johns Hopkins Univ. School of
Medicine, 720 Rutland Ave., Ross Bldg 646, Baltimore, MD 21205, USA
FEATURES Location/Qualifiers
source 1..1302
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="1141"
/host="Homo sapiens"
/db_xref="taxon:11676"
/clone="1141_053006"
/country="Malawi"
/collection_date="30-May-2006"
gene <1..>1302
/gene="pol"
CDS <1..>1302
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="AEI90843.1"
/db_xref="GI:338227745"
/translation="PQITLWQRPLVTIRIGGQIKEALLDTGADDTVLEELNLPGKWKP
KMIGGIGGFIKVRQYEQIPIEICGKKAIGTVLVGPTPVNIIGRNMLTQLGCTLNFPIS
PIKTVPVKLKPGMDGPKVKQWPLTEEKIKALTAICEEMEKEGKITKIGPENPYNTPVF
AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKRKSVTVLDVGDAYFSVP
LDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRTQNPD
IVICQYMDDLYVGSDLEIGQHREKIEELREHLLKWGLTTPDKKYQKEPPFRWMGYELH
PDKWTVQPIQLPEKTSWTVNDIQKLVGKLNWASQIYPGIKVKQLCRLLRGAKALTDIV
PLTEEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGHD"
BASE COUNT 512 a 221 c 281 g 287 t 1 other
ORIGIN
1 cctcaaatca ctctttggca acgacccctt gtcacaataa gaataggggg ccagataaag
61 gaggctctcc tagatacagg agcagatgat acagtattag aagaactaaa tttgccagga
121 aaatggaaac caaaaatgat agggggaatt ggaggtttta tcaaagtaag acagtatgaa
181 caaataccta tagaaatttg tggaaaaaag gctataggta cagtattggt gggacctaca
241 cctgtcaaca taattggaag aaatatgttg actcagcttg gatgcacact aaattttcca
301 attagtccca ttaaaactgt accagtaaaa ttaaagccag gaatggatgg cccaaaagtt
361 aaacaatggc cattgacaga agagaaaata aaagcattaa cagcaatttg tgaggaaatg
421 gaaaaggaag gaaaaattac aaaaattggg cctgaaaatc catataacac tccagtattt
481 gccataaaaa agaaggacag tactaagtgg agaaaactag tagatttcag ggaacttaat
541 aaaagaactc aagacttttg ggaagttcaa ttaggaatac cacacccagc agggttaaaa
601 aagagaaaat cagtgacagt gctagatgtg ggggatgcat atttttcagt tcctctggat
661 gaagatttca ggaaatatac tgcattcacc atacctagta taaacaatga gacaccagga
721 attagatacc aatataatgt gctgccacag ggatggaaag gatcaccagc aatatttcag
781 agcagcatga caaaaatctt agagcccttt aggacacaaa atccagatat agttatctgt
841 caatatatgg atgacttgta tgtaggatct gacttagaaa tagggcaaca tagagaaaaa
901 atagaggaac taagggaaca tttattgaaa tggggactta ccacaccaga caagaaatat
961 cagaaagagc ccccatttcg ttggatggga tatgaactcc atcctgacaa atggacagta
1021 caacctatac agctgccaga aaagactagc tggactgtca atgatataca aaagttagtg
1081 ggaaaattaa actgggccag tcagatttac ccagggatta aagtaaagca actgtgcaga
1141 ctccttaggg gagccaaagc actaacagac atagtaccac tgactgaaga agcagaatta
1201 gaattggcag agaacaggga aattctaaar gaaccagtac atggagtcta ttatgacccc
1261 tcaaaagact taatagctga aatacagaaa caggggcatg ac
//
last modified: Tue May 31 10:56 2022