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LOCUS	    HM635482		    1302 bp    RNA     linear	VRL 31-JUL-2011
DEFINITION  HIV-1 clone 1141_053006 from Malawi pol protein (pol) gene, partial
	    cds
ACCESSION   HM635482
VERSION     HM635482.1 GI:338227744
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1302)
            Show all sequences for reference 1
  AUTHORS   Fogel,J., Li,Q., Taha,T.E., Hoover,D.R., Kumwenda,N.I.,
	    Mofenson,L.M., Kumwenda,J.J., Fowler,M.G., Thigpen,M.C. and
	    Eshleman,S.H.
  TITLE     Initiation of antiretroviral treatment in women after delivery can
	    induce multiclass drug resistance in breastfeeding HIV-infected
	    infants.
  JOURNAL   Clin. Infect. Dis.. 52(8); 1069-76 (2011)
  PUBMED    21460326
REFERENCE   2 (bases 1 to 1302)
            Show all sequences for reference 2
  AUTHORS   Lidstrom,J., Li,Q., Taha,T.E., Hoover,D.R., Kumwenda,N.I.,
	    Mofenson,L.M., Kumwenda,J.J., Fowler,M.G., Thigpen,M.C. and
	    Eshleman,S.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-JUL-2010) Pathology, Johns Hopkins Univ. School of
	    Medicine, 720 Rutland Ave., Ross Bldg 646, Baltimore, MD 21205, USA
FEATURES             Location/Qualifiers
     source	     1..1302
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="1141"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /clone="1141_053006"
		     /country="Malawi"
		     /collection_date="30-May-2006"
     gene	     <1..>1302
		     /gene="pol"
     CDS	     <1..>1302
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="AEI90843.1"
		     /db_xref="GI:338227745"
		     /translation="PQITLWQRPLVTIRIGGQIKEALLDTGADDTVLEELNLPGKWKP
		     KMIGGIGGFIKVRQYEQIPIEICGKKAIGTVLVGPTPVNIIGRNMLTQLGCTLNFPIS
		     PIKTVPVKLKPGMDGPKVKQWPLTEEKIKALTAICEEMEKEGKITKIGPENPYNTPVF
		     AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKRKSVTVLDVGDAYFSVP
		     LDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRTQNPD
		     IVICQYMDDLYVGSDLEIGQHREKIEELREHLLKWGLTTPDKKYQKEPPFRWMGYELH
		     PDKWTVQPIQLPEKTSWTVNDIQKLVGKLNWASQIYPGIKVKQLCRLLRGAKALTDIV
		     PLTEEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGHD"
BASE COUNT	512 a	 221 c	  281 g    287 t      1 other
ORIGIN
       1 cctcaaatca ctctttggca acgacccctt gtcacaataa gaataggggg ccagataaag 
      61 gaggctctcc tagatacagg agcagatgat acagtattag aagaactaaa tttgccagga 
     121 aaatggaaac caaaaatgat agggggaatt ggaggtttta tcaaagtaag acagtatgaa 
     181 caaataccta tagaaatttg tggaaaaaag gctataggta cagtattggt gggacctaca 
     241 cctgtcaaca taattggaag aaatatgttg actcagcttg gatgcacact aaattttcca 
     301 attagtccca ttaaaactgt accagtaaaa ttaaagccag gaatggatgg cccaaaagtt 
     361 aaacaatggc cattgacaga agagaaaata aaagcattaa cagcaatttg tgaggaaatg 
     421 gaaaaggaag gaaaaattac aaaaattggg cctgaaaatc catataacac tccagtattt 
     481 gccataaaaa agaaggacag tactaagtgg agaaaactag tagatttcag ggaacttaat 
     541 aaaagaactc aagacttttg ggaagttcaa ttaggaatac cacacccagc agggttaaaa 
     601 aagagaaaat cagtgacagt gctagatgtg ggggatgcat atttttcagt tcctctggat 
     661 gaagatttca ggaaatatac tgcattcacc atacctagta taaacaatga gacaccagga 
     721 attagatacc aatataatgt gctgccacag ggatggaaag gatcaccagc aatatttcag 
     781 agcagcatga caaaaatctt agagcccttt aggacacaaa atccagatat agttatctgt 
     841 caatatatgg atgacttgta tgtaggatct gacttagaaa tagggcaaca tagagaaaaa 
     901 atagaggaac taagggaaca tttattgaaa tggggactta ccacaccaga caagaaatat 
     961 cagaaagagc ccccatttcg ttggatggga tatgaactcc atcctgacaa atggacagta 
    1021 caacctatac agctgccaga aaagactagc tggactgtca atgatataca aaagttagtg 
    1081 ggaaaattaa actgggccag tcagatttac ccagggatta aagtaaagca actgtgcaga 
    1141 ctccttaggg gagccaaagc actaacagac atagtaccac tgactgaaga agcagaatta 
    1201 gaattggcag agaacaggga aattctaaar gaaccagtac atggagtcta ttatgacccc 
    1261 tcaaaagact taatagctga aatacagaaa caggggcatg ac
//
last modified: Tue May 31 10:56 2022


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