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LOCUS	    HM593150		    1736 bp    DNA     linear	VRL 21-JUL-2010
DEFINITION  HIV-1 isolate SK142 from South Africa gag protein (gag) gene,
	    complete cds; and pol protein (pol) gene, partial cds
ACCESSION   HM593150
VERSION     HM593150.1 GI:300719849
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1736)
            Show all sequences for reference 1
  AUTHORS   Wright,J.K., Brumme,Z.L., Carlson,J.M., Heckerman,D., Kadie,C.M.,
	    Brumme,C.J., Wang,B., Losina,E., Miura,T., Chonco,F., van der
	    Stok,M., Mncube,Z., Bishop,K., Goulder,P.J.R., Walker,B.D.,
	    Brockman,M.A. and Ndung'u,T.
  TITLE     Gag-protease-mediated replication capacity in HIV-1 subtype C
	    chronic infection: associations with HLA type and clinical
	    parameters.
  JOURNAL   J. Virol.. 84(20); 10820-31 (2010)
  PUBMED    20702636
REFERENCE   2 (bases 1 to 1736)
            Show all sequences for reference 2
  AUTHORS   Wright,J.K., Brumme,Z.L., Carlson,J.M., Heckerman,D., Kadie,C.M.,
	    Brumme,C.J., Wang,B., Losina,E., Miura,T., Chonco,F., van der
	    Stok,M., Mncube,Z., Bishop,K., Goulder,P.J.R., Walker,B.D.,
	    Brockman,M.A. and Ndung'u,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-JUN-2010) HIV Pathogenesis Programme, University of
	    KwaZulu Natal, 719 Umbilo Road, Durban, KwaZulu Natal 4001, South
	    Africa
FEATURES             Location/Qualifiers
     source	     1..1736
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolate="SK142"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="South Africa"
		     /collection_date="10-Feb-2004"
     gene	     1..1479
		     /gene="gag"
     CDS	     1..1479
		     /gene="gag"
		     /codon_start="1"
		     /transl_table="1"
		     /product="gag protein"
		     /protein_id="ADK32872.1"
		     /db_xref="GI:300719850"
		     /translation="MGARASILRGGKLDTWEKIKLRPXGKKHYXIKHLVWASRELERF
		     ALNPGLLETSEGCKQIXKQLQPAIQTGTEELRSLFNTVATLYCVHEGIKIKDTKEALD
		     KIEEEQNKSQQKTQQAETAAGKVSQNYPIVQNLQGQMVHQALSPRTLNAWVKVIEEKG
		     FNPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKDTINEEAAEWDRLHPVXAG
		     PVAPGQMREPRGSDIAGTTSSLQEQIGWMTNNPPIPVGEIYKRWIILGLNKIVRMYSP
		     VSILDIKQGPKEPFRDYVDRFFKTLRAEQATQDVKNWMTDTLLVQNANPDCKTILKAL
		     GSGATLEEMMTACQGVGGPSHKARVLAEAMSQANSTSILIQRSNFKGPRRIIKCFNCG
		     KEGHLARNCRAPRKKGCWKCGKEGHQMKDCTERQANFLGRFWPSHKGRPGNFLQNRPE
		     PXAPPJESFRFEETTPAPKQELKDREPLTXLKSLFGSDPLSQ"
     gene	     <1284..>1736
		     /gene="pol"
     CDS	     <1284..>1736
		     /gene="pol"
		     /note="contains protease"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="ADK32873.1"
		     /db_xref="GI:300719851"
		     /translation="FFREILAFPQGEAREFPSEQTRAXGXTXREXQVRGDNPXSEXGX
		     ERQGTLNXPQITLWQRPLVSIKVGGQIKEALLDTGADDTVLEEINLPGKWKPKMIGGI
		     GGFIKVRQYEQILIEICGKKAIGTVLVGPTPVNIIGRNMLTQLGCTLNF"
BASE COUNT	631 a	 316 c	  417 g    347 t     25 other
ORIGIN
       1 atgggtgcga gagcgtcaat attaagaggg ggaaaattag atacatggga aaaaattaag 
      61 ttaaggccar ggggaaagaa acactatcrg ataaaacacc tagtatgggc aagcagrgar 
     121 ctggaaagat ttgcacttaa tcctggcctt ttagagacat cagaaggctg taaacaaata 
     181 mtraaacagc ttcaaccagc tattcagaca ggaacagagg aacttagatc attattcaac 
     241 acagtggcga ctctctactg tgtgcatgaa gggataaaga taaaagacac caaagaagcc 
     301 ctggataaga tagaggaaga acaaaacaaa agtcagcaaa aaacacagca ggcrgaaacg 
     361 gctgccggaa aggtcagtca aaattatcct atagtacaga atctccaagg gcaaatggta 
     421 caccaagccc tatcacctag aactttgaat gcatgggtaa aagtcataga ggagaagggt 
     481 tttaacccyg aggtaatacc catgttttca gcattatcag aaggagccac cccgcaagat 
     541 ttaaacacca tgttgaayac agtgggggga catcaagcag ccatgcaaat gttraaggat 
     601 accatcaatg aggaggctgc agaatgggat aggctacatc cagtacakgc agggcctgtt 
     661 gcaccaggcc aaatgagaga accaagggga agcgacatag caggaactac tagtagcctt 
     721 caggaacaaa taggatggat gacaaacaac ccacctattc cagtgggaga aatctataaa 
     781 agatggataa ttctggggtt aaataagata gtaagaatgt atagccctgt cagcattttg 
     841 gacataaaac aggggccaaa ggaacccttt agagactatg tagatcggtt ctttaaaact 
     901 ttaagagctg aacaagctac acaagatgta aaaaattgga tgacagacac cttgctggtc 
     961 caaaatgcga acccagattg taaraccatt ttaaaagcat taggatcagg ggctacatta 
    1021 gaagaaatga tgacagcatg tcaaggagtr gggggaccta gccacaaagc aagagtgttg 
    1081 gctgaggcaa tgagccaagc aaacagtacc agcatactga tacagagaag yaattttaaa 
    1141 ggccctagaa gaattattaa atgtttcaat tgtggcaagg aagggcacct agccagaaac 
    1201 tgcagggccc ctaggaaaaa gggttgttgg aaatgtggaa aagaaggaca ccaaatgaaa 
    1261 gaytgtactg agaggcaggc taatttttta gggagattct ggccttccca caaggggagg 
    1321 ccagggaatt tccttcagaa cagaccagag ccawcggcyc caccawtaga gagyttcagg 
    1381 ttcgaggaga caaccccygc tccgaarcag garctgaaag acagggaacc cttaactkcc 
    1441 ctcaaatcac tctttggcag cgaccccttg tctcaataaa agtagggggc cagataaagg 
    1501 aggctctctt agatacagga gcagatgaya cagtactaga ggaaataaat ttgccaggaa 
    1561 aatggaaacc aaaaatgata ggaggaattg gaggttttat taaagtaaga cagtatgaac 
    1621 aaatacttat agaaatttgt ggaaaaaaag ctataggtac agtattagta ggacctacac 
    1681 ctgtcaacat aattggaaga aatatgttga ctcagcttgg ctgyactcta aatttt
//
last modified: Tue May 31 10:56 2022


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