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LOCUS HM593150 1736 bp DNA linear VRL 21-JUL-2010
DEFINITION HIV-1 isolate SK142 from South Africa gag protein (gag) gene,
complete cds; and pol protein (pol) gene, partial cds
ACCESSION HM593150
VERSION HM593150.1 GI:300719849
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1736)
Show all sequences for reference 1
AUTHORS Wright,J.K., Brumme,Z.L., Carlson,J.M., Heckerman,D., Kadie,C.M.,
Brumme,C.J., Wang,B., Losina,E., Miura,T., Chonco,F., van der
Stok,M., Mncube,Z., Bishop,K., Goulder,P.J.R., Walker,B.D.,
Brockman,M.A. and Ndung'u,T.
TITLE Gag-protease-mediated replication capacity in HIV-1 subtype C
chronic infection: associations with HLA type and clinical
parameters.
JOURNAL J. Virol.. 84(20); 10820-31 (2010)
PUBMED 20702636
REFERENCE 2 (bases 1 to 1736)
Show all sequences for reference 2
AUTHORS Wright,J.K., Brumme,Z.L., Carlson,J.M., Heckerman,D., Kadie,C.M.,
Brumme,C.J., Wang,B., Losina,E., Miura,T., Chonco,F., van der
Stok,M., Mncube,Z., Bishop,K., Goulder,P.J.R., Walker,B.D.,
Brockman,M.A. and Ndung'u,T.
TITLE Direct Submission
JOURNAL Submitted (07-JUN-2010) HIV Pathogenesis Programme, University of
KwaZulu Natal, 719 Umbilo Road, Durban, KwaZulu Natal 4001, South
Africa
FEATURES Location/Qualifiers
source 1..1736
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="SK142"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="South Africa"
/collection_date="10-Feb-2004"
gene 1..1479
/gene="gag"
CDS 1..1479
/gene="gag"
/codon_start="1"
/transl_table="1"
/product="gag protein"
/protein_id="ADK32872.1"
/db_xref="GI:300719850"
/translation="MGARASILRGGKLDTWEKIKLRPXGKKHYXIKHLVWASRELERF
ALNPGLLETSEGCKQIXKQLQPAIQTGTEELRSLFNTVATLYCVHEGIKIKDTKEALD
KIEEEQNKSQQKTQQAETAAGKVSQNYPIVQNLQGQMVHQALSPRTLNAWVKVIEEKG
FNPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKDTINEEAAEWDRLHPVXAG
PVAPGQMREPRGSDIAGTTSSLQEQIGWMTNNPPIPVGEIYKRWIILGLNKIVRMYSP
VSILDIKQGPKEPFRDYVDRFFKTLRAEQATQDVKNWMTDTLLVQNANPDCKTILKAL
GSGATLEEMMTACQGVGGPSHKARVLAEAMSQANSTSILIQRSNFKGPRRIIKCFNCG
KEGHLARNCRAPRKKGCWKCGKEGHQMKDCTERQANFLGRFWPSHKGRPGNFLQNRPE
PXAPPJESFRFEETTPAPKQELKDREPLTXLKSLFGSDPLSQ"
gene <1284..>1736
/gene="pol"
CDS <1284..>1736
/gene="pol"
/note="contains protease"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="ADK32873.1"
/db_xref="GI:300719851"
/translation="FFREILAFPQGEAREFPSEQTRAXGXTXREXQVRGDNPXSEXGX
ERQGTLNXPQITLWQRPLVSIKVGGQIKEALLDTGADDTVLEEINLPGKWKPKMIGGI
GGFIKVRQYEQILIEICGKKAIGTVLVGPTPVNIIGRNMLTQLGCTLNF"
BASE COUNT 631 a 316 c 417 g 347 t 25 other
ORIGIN
1 atgggtgcga gagcgtcaat attaagaggg ggaaaattag atacatggga aaaaattaag
61 ttaaggccar ggggaaagaa acactatcrg ataaaacacc tagtatgggc aagcagrgar
121 ctggaaagat ttgcacttaa tcctggcctt ttagagacat cagaaggctg taaacaaata
181 mtraaacagc ttcaaccagc tattcagaca ggaacagagg aacttagatc attattcaac
241 acagtggcga ctctctactg tgtgcatgaa gggataaaga taaaagacac caaagaagcc
301 ctggataaga tagaggaaga acaaaacaaa agtcagcaaa aaacacagca ggcrgaaacg
361 gctgccggaa aggtcagtca aaattatcct atagtacaga atctccaagg gcaaatggta
421 caccaagccc tatcacctag aactttgaat gcatgggtaa aagtcataga ggagaagggt
481 tttaacccyg aggtaatacc catgttttca gcattatcag aaggagccac cccgcaagat
541 ttaaacacca tgttgaayac agtgggggga catcaagcag ccatgcaaat gttraaggat
601 accatcaatg aggaggctgc agaatgggat aggctacatc cagtacakgc agggcctgtt
661 gcaccaggcc aaatgagaga accaagggga agcgacatag caggaactac tagtagcctt
721 caggaacaaa taggatggat gacaaacaac ccacctattc cagtgggaga aatctataaa
781 agatggataa ttctggggtt aaataagata gtaagaatgt atagccctgt cagcattttg
841 gacataaaac aggggccaaa ggaacccttt agagactatg tagatcggtt ctttaaaact
901 ttaagagctg aacaagctac acaagatgta aaaaattgga tgacagacac cttgctggtc
961 caaaatgcga acccagattg taaraccatt ttaaaagcat taggatcagg ggctacatta
1021 gaagaaatga tgacagcatg tcaaggagtr gggggaccta gccacaaagc aagagtgttg
1081 gctgaggcaa tgagccaagc aaacagtacc agcatactga tacagagaag yaattttaaa
1141 ggccctagaa gaattattaa atgtttcaat tgtggcaagg aagggcacct agccagaaac
1201 tgcagggccc ctaggaaaaa gggttgttgg aaatgtggaa aagaaggaca ccaaatgaaa
1261 gaytgtactg agaggcaggc taatttttta gggagattct ggccttccca caaggggagg
1321 ccagggaatt tccttcagaa cagaccagag ccawcggcyc caccawtaga gagyttcagg
1381 ttcgaggaga caaccccygc tccgaarcag garctgaaag acagggaacc cttaactkcc
1441 ctcaaatcac tctttggcag cgaccccttg tctcaataaa agtagggggc cagataaagg
1501 aggctctctt agatacagga gcagatgaya cagtactaga ggaaataaat ttgccaggaa
1561 aatggaaacc aaaaatgata ggaggaattg gaggttttat taaagtaaga cagtatgaac
1621 aaatacttat agaaatttgt ggaaaaaaag ctataggtac agtattagta ggacctacac
1681 ctgtcaacat aattggaaga aatatgttga ctcagcttgg ctgyactcta aatttt
//
last modified: Tue May 31 10:56 2022