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LOCUS	    HM593127		    1733 bp    DNA     linear	VRL 21-JUL-2010
DEFINITION  HIV-1 isolate SK120 from South Africa gag protein (gag) gene,
	    complete cds; and pol protein (pol) gene, partial cds
ACCESSION   HM593127
VERSION     HM593127.1 GI:300719780
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1733)
            Show all sequences for reference 1
  AUTHORS   Wright,J.K., Brumme,Z.L., Carlson,J.M., Heckerman,D., Kadie,C.M.,
	    Brumme,C.J., Wang,B., Losina,E., Miura,T., Chonco,F., van der
	    Stok,M., Mncube,Z., Bishop,K., Goulder,P.J.R., Walker,B.D.,
	    Brockman,M.A. and Ndung'u,T.
  TITLE     Gag-protease-mediated replication capacity in HIV-1 subtype C
	    chronic infection: associations with HLA type and clinical
	    parameters.
  JOURNAL   J. Virol.. 84(20); 10820-31 (2010)
  PUBMED    20702636
REFERENCE   2 (bases 1 to 1733)
            Show all sequences for reference 2
  AUTHORS   Wright,J.K., Brumme,Z.L., Carlson,J.M., Heckerman,D., Kadie,C.M.,
	    Brumme,C.J., Wang,B., Losina,E., Miura,T., Chonco,F., van der
	    Stok,M., Mncube,Z., Bishop,K., Goulder,P.J.R., Walker,B.D.,
	    Brockman,M.A. and Ndung'u,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-JUN-2010) HIV Pathogenesis Programme, University of
	    KwaZulu Natal, 719 Umbilo Road, Durban, KwaZulu Natal 4001, South
	    Africa
FEATURES             Location/Qualifiers
     source	     1..1733
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolate="SK120"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="South Africa"
		     /collection_date="02-Dec-2003"
     gene	     1..1476
		     /gene="gag"
     CDS	     1..1476
		     /gene="gag"
		     /codon_start="1"
		     /transl_table="1"
		     /product="gag protein"
		     /protein_id="ADK32826.1"
		     /db_xref="GI:300719781"
		     /translation="MGASASILXGEKLDKWEKIRLRPGGKKCYMLKHIIWASKELERF
		     ALNPGLLETAEGCKQIIKQLHPALQTGTEELKSLYNTIATLYCVHANIDVRDTKEALD
		     KIEEEQNKCQQKTQQAKAADGKVSQNYPIVRDFQGQMVHQAJSPRTLNAWVKVIEEKA
		     FSPEVIPMFTALSEGATPQDLNTMLNTVGGHQAAMQMLKDTINEEAAEWDRLHPVHAG
		     PIAPNQLREPRGSDIAGTTSTLQEQIAWMTSNPPVPVGDIYKRWIILGLNKIVRMYSP
		     VSILDIKQGPKEPFRDYVDRFFKTLRAEQATQDVKNWMTDTLLVQNANPDCKTILRAL
		     GPGASLEEMMTACQGVGGPSHKARVLAEAMSQTNGTNIMMQRGNFKGSKRVKCFNCGK
		     EGHIARNCRAPRKKGCWKCGQEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQNRPEP
		     XAPPAESFMFGETXXAPKQEPKDREPLTSLKSLFGSDPLSQ"
     gene	     <1281..>1733
		     /gene="pol"
     CDS	     <1281..>1733
		     /gene="pol"
		     /note="contains protease"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="ADK32827.1"
		     /db_xref="GI:300719782"
		     /translation="FFRENLAFPQGEAREFXSEQTRAXXPTSRELHVXGDXXRSEAGA
		     ERQGTLNFPQITLWQRPLVSIKVGGQIREALLDTGADDTVLEDIDLPGKWKPKMIGGI
		     GGFIKVRQYDQILIEICGKKAIGTVLVGPTPVNIIGRNMLTQLGCTLNF"
BASE COUNT	628 a	 316 c	  410 g    347 t     32 other
ORIGIN
       1 atgggtgcga gtgcgtcaat attaaraggc gagaaattag ataaatggga aaarattagg 
      61 ttacggccag ggggaaagaa atgttatatg ytaaaacaca tmatatgggc aagcaargag 
     121 ctggaaagat ttgcacttaa ccctggcctt ttagaaacag cagaaggctg taaacaaata 
     181 ataaaacagc twcayccagc tcttcagaca ggaacagagg aacttaaatc attgtacaac 
     241 acaatagcaa cwctctattg tgtacatgca aacatagatg tamgagacac caaggaagcc 
     301 ttagacaaaa tagaggaaga acaaaacaaa tgtcagcaaa aaacacagca ggcaaaagcr 
     361 gctgacggaa aggtcagtca aaattatcct atagtgaggg attttcaagg gcaaatggta 
     421 catcaagccm tatcacctag aaccttgaat gcatgggtaa aagtaataga ggagaaggct 
     481 tttagcccag aggtaatacc catgtttaca gcattrtcag aaggagccac cccacaagat 
     541 ctaaacacca tgttaaatac wgtgggggga catcaagcag ccatgcaaat gttaaaagat 
     601 accatcaatg aggaggctgc agaatgggay agattacacc crgtvcatgc ggggcctatt 
     661 gcwccaaacc agctgagaga accaagggga agtgacatag caggaactac tagtaccctt 
     721 cargaacaaa tagcatggat gacaagtaac ccacctgtyc cagtgggaga catctataaa 
     781 agatggataa ttctggggtt aaataaaata gtgagaatgt atagccctgt cagcattttg 
     841 gacataaaac aagggccaaa ggaacccttt agagactatg tagaycggtt cttyaaaact 
     901 ttaagagctg aacaagctac acaagatgta aaaaattgga tgacagacac cttgttggtc 
     961 caaaatgcaa acccagattg taagaccatt ttaagagcat taggaccagg ggcttcatta 
    1021 gaagaaatga tgacagcatg ccagggagtg ggaggaccta gtcacaaagc aagagtgttg 
    1081 gctgaggcaa tgagccaaac aaatggtaca aacataatga tgcagagrgg caattttaaa 
    1141 ggctctaaaa gagttaaatg tttcaactgt ggcaaggaag ggcacatagc cagaaattgc 
    1201 agggccccta ggaaaaaagg ctgctggaaa tgtggacagg aaggacacca aatgaaagac 
    1261 tgtactgaaa ggcaggctaa ttttttaggg aaaatttggc cttcccacaa ggggaggcca 
    1321 gggaatttyc ttcagaacag accagagcca wcrgccccac cagcagagag cttcatgtty 
    1381 ggggagacav mcyccgctcc gaagcaggag ccgaaagaca gggaaccctt aacttccctc 
    1441 aaatcactct ttggcagcga ccccttgtct caataaaagt aggrggbcag ataagrgagg 
    1501 ctctcttaga cacaggagca gatgatacag tattagaaga catagatttg ccaggaaaat 
    1561 ggaaaccaaa aatgatagga ggaattggag gttttatcaa agtaagacaa tatgatcaaa 
    1621 tacttataga aatttgtgga aaaaaggcta taggtacagt attagtaggg cctacacctg 
    1681 tcaacataat tggaaggaac atgttgactc agcttggatg cacactaaat ttt
//
last modified: Tue May 31 10:56 2022


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