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LOCUS HM593127 1733 bp DNA linear VRL 21-JUL-2010
DEFINITION HIV-1 isolate SK120 from South Africa gag protein (gag) gene,
complete cds; and pol protein (pol) gene, partial cds
ACCESSION HM593127
VERSION HM593127.1 GI:300719780
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1733)
Show all sequences for reference 1
AUTHORS Wright,J.K., Brumme,Z.L., Carlson,J.M., Heckerman,D., Kadie,C.M.,
Brumme,C.J., Wang,B., Losina,E., Miura,T., Chonco,F., van der
Stok,M., Mncube,Z., Bishop,K., Goulder,P.J.R., Walker,B.D.,
Brockman,M.A. and Ndung'u,T.
TITLE Gag-protease-mediated replication capacity in HIV-1 subtype C
chronic infection: associations with HLA type and clinical
parameters.
JOURNAL J. Virol.. 84(20); 10820-31 (2010)
PUBMED 20702636
REFERENCE 2 (bases 1 to 1733)
Show all sequences for reference 2
AUTHORS Wright,J.K., Brumme,Z.L., Carlson,J.M., Heckerman,D., Kadie,C.M.,
Brumme,C.J., Wang,B., Losina,E., Miura,T., Chonco,F., van der
Stok,M., Mncube,Z., Bishop,K., Goulder,P.J.R., Walker,B.D.,
Brockman,M.A. and Ndung'u,T.
TITLE Direct Submission
JOURNAL Submitted (07-JUN-2010) HIV Pathogenesis Programme, University of
KwaZulu Natal, 719 Umbilo Road, Durban, KwaZulu Natal 4001, South
Africa
FEATURES Location/Qualifiers
source 1..1733
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="SK120"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="South Africa"
/collection_date="02-Dec-2003"
gene 1..1476
/gene="gag"
CDS 1..1476
/gene="gag"
/codon_start="1"
/transl_table="1"
/product="gag protein"
/protein_id="ADK32826.1"
/db_xref="GI:300719781"
/translation="MGASASILXGEKLDKWEKIRLRPGGKKCYMLKHIIWASKELERF
ALNPGLLETAEGCKQIIKQLHPALQTGTEELKSLYNTIATLYCVHANIDVRDTKEALD
KIEEEQNKCQQKTQQAKAADGKVSQNYPIVRDFQGQMVHQAJSPRTLNAWVKVIEEKA
FSPEVIPMFTALSEGATPQDLNTMLNTVGGHQAAMQMLKDTINEEAAEWDRLHPVHAG
PIAPNQLREPRGSDIAGTTSTLQEQIAWMTSNPPVPVGDIYKRWIILGLNKIVRMYSP
VSILDIKQGPKEPFRDYVDRFFKTLRAEQATQDVKNWMTDTLLVQNANPDCKTILRAL
GPGASLEEMMTACQGVGGPSHKARVLAEAMSQTNGTNIMMQRGNFKGSKRVKCFNCGK
EGHIARNCRAPRKKGCWKCGQEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQNRPEP
XAPPAESFMFGETXXAPKQEPKDREPLTSLKSLFGSDPLSQ"
gene <1281..>1733
/gene="pol"
CDS <1281..>1733
/gene="pol"
/note="contains protease"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="ADK32827.1"
/db_xref="GI:300719782"
/translation="FFRENLAFPQGEAREFXSEQTRAXXPTSRELHVXGDXXRSEAGA
ERQGTLNFPQITLWQRPLVSIKVGGQIREALLDTGADDTVLEDIDLPGKWKPKMIGGI
GGFIKVRQYDQILIEICGKKAIGTVLVGPTPVNIIGRNMLTQLGCTLNF"
BASE COUNT 628 a 316 c 410 g 347 t 32 other
ORIGIN
1 atgggtgcga gtgcgtcaat attaaraggc gagaaattag ataaatggga aaarattagg
61 ttacggccag ggggaaagaa atgttatatg ytaaaacaca tmatatgggc aagcaargag
121 ctggaaagat ttgcacttaa ccctggcctt ttagaaacag cagaaggctg taaacaaata
181 ataaaacagc twcayccagc tcttcagaca ggaacagagg aacttaaatc attgtacaac
241 acaatagcaa cwctctattg tgtacatgca aacatagatg tamgagacac caaggaagcc
301 ttagacaaaa tagaggaaga acaaaacaaa tgtcagcaaa aaacacagca ggcaaaagcr
361 gctgacggaa aggtcagtca aaattatcct atagtgaggg attttcaagg gcaaatggta
421 catcaagccm tatcacctag aaccttgaat gcatgggtaa aagtaataga ggagaaggct
481 tttagcccag aggtaatacc catgtttaca gcattrtcag aaggagccac cccacaagat
541 ctaaacacca tgttaaatac wgtgggggga catcaagcag ccatgcaaat gttaaaagat
601 accatcaatg aggaggctgc agaatgggay agattacacc crgtvcatgc ggggcctatt
661 gcwccaaacc agctgagaga accaagggga agtgacatag caggaactac tagtaccctt
721 cargaacaaa tagcatggat gacaagtaac ccacctgtyc cagtgggaga catctataaa
781 agatggataa ttctggggtt aaataaaata gtgagaatgt atagccctgt cagcattttg
841 gacataaaac aagggccaaa ggaacccttt agagactatg tagaycggtt cttyaaaact
901 ttaagagctg aacaagctac acaagatgta aaaaattgga tgacagacac cttgttggtc
961 caaaatgcaa acccagattg taagaccatt ttaagagcat taggaccagg ggcttcatta
1021 gaagaaatga tgacagcatg ccagggagtg ggaggaccta gtcacaaagc aagagtgttg
1081 gctgaggcaa tgagccaaac aaatggtaca aacataatga tgcagagrgg caattttaaa
1141 ggctctaaaa gagttaaatg tttcaactgt ggcaaggaag ggcacatagc cagaaattgc
1201 agggccccta ggaaaaaagg ctgctggaaa tgtggacagg aaggacacca aatgaaagac
1261 tgtactgaaa ggcaggctaa ttttttaggg aaaatttggc cttcccacaa ggggaggcca
1321 gggaatttyc ttcagaacag accagagcca wcrgccccac cagcagagag cttcatgtty
1381 ggggagacav mcyccgctcc gaagcaggag ccgaaagaca gggaaccctt aacttccctc
1441 aaatcactct ttggcagcga ccccttgtct caataaaagt aggrggbcag ataagrgagg
1501 ctctcttaga cacaggagca gatgatacag tattagaaga catagatttg ccaggaaaat
1561 ggaaaccaaa aatgatagga ggaattggag gttttatcaa agtaagacaa tatgatcaaa
1621 tacttataga aatttgtgga aaaaaggcta taggtacagt attagtaggg cctacacctg
1681 tcaacataat tggaaggaac atgttgactc agcttggatg cacactaaat ttt
//
last modified: Tue May 31 10:56 2022