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LOCUS HM368240 2604 bp RNA linear VRL 18-SEP-2010
DEFINITION HIV-1 isolate M1001-C2 from USA envelope glycoprotein (env) gene,
partial cds
ACCESSION HM368240
VERSION HM368240.1 GI:306847382
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 2604)
Show all sequences for reference 1
AUTHORS Kishko,M., Somasundaran,M., Brewster,F., Sullivan,J.L.,
Clapham,P.R. and Luzuriaga,K.
TITLE Genotypic and functional properties of early infant HIV-1
envelopes.
JOURNAL Retrovirology.. 8(1); 67 (2011)
PUBMED 21843318
REFERENCE 2 (bases 1 to 2604)
Show all sequences for reference 2
AUTHORS Kishko,M.
TITLE Direct Submission
JOURNAL Submitted (28-MAY-2010) Pediatric Immunology, UMass Medical School,
373 Plantation St Suite 318, Worcester, MA 01605, USA
FEATURES Location/Qualifiers
source 1..2604
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="M1001-C2"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="USA"
/collection_date="1986"
/note="subtype: B"
gene 1..>2604
/gene="env"
CDS 1..>2604
/gene="env"
/codon_start="1"
/transl_table="1"
/product="envelope glycoprotein"
/protein_id="ADN06160.1"
/db_xref="GI:306847383"
/translation="MRVMGIRKNYPHLWRWGIMLLGLLMICSATEKLWVTVYYGVPVW
KEATTTLFCASDAKAYEREVHNVWATHACVPTDPSPQEVVLGNVTENFNMWKNSMVEQ
MHEDIISLWDQSLKPCVKLTPLCVTLNCTDELKNKTEWKNVTNSSNWKKMEKGEIKNC
SFNISTDIRDRIQQQYALFYNLDIVPIDKDKDNTSSNTNYTNYRLISCNTSVITQACP
KVSFEPIPIHYCAPAGFAILKCNNKKFNGKGPCTNVSTVQCTHGIRPVVSTQLLLNGS
LAEEGVVIRSDNFTDNAKTIIVQLKEPVKINCTRPNNNTRRGIHIGPGGAFYSTGDII
GDIRQAHCNISGTKWNSTLKQIVKKLREQFKNKTIVFNHSSGGDPEIVMHSFNCRGEF
FYCDSTQLFNSTWNSTWLNDTEGLNNTEGEPITLQCRIKQFINMWQEVGKAMYAPPIA
GPINCSSNITGLLLTRDGGNNNDTKNTEIFRPGGGDMRDNWRSELYKYKVVKIEPLGL
APTKAKRRVVQREKRAVGIGAMFLGFLGAAGSTMGAASVTLTVQARLLLSGIVQQQNN
LLRAIEAQQHLLQLTVWGIKQLQARVLAVERYLKDQQLLGIWGCSGKLICTTTVPWNA
SWSNKSLNKIWDNMTWMEWEREIDNYTDLIYTLLEESQNQQEKNEQELLELDKWANLW
NWFSITHWLWYIKIFIMIVGGLVGLRIVFTVLSIVNRVRKGYSPLSFQTRFPAPKGPD
RPEGTEEEGGDRDRDRSSQLVDGFLAILWVDLRSLCLFSYHRLRDLILIAARIVELLG
RRGWEALKYWWNLLQYWSQELKSSAISLLNATAIAVAEGTDRVIEVLQRAGRAILHIP
RRIRQGLERLLL"
BASE COUNT 909 a 439 c 614 g 642 t
ORIGIN
1 atgagagtga tggggatcag gaagaattat ccgcacttgt ggagatgggg catcatgctc
61 cttgggttat taatgatctg tagtgctaca gaaaaattgt gggtcacagt ctattatggg
121 gtacctgtgt ggaaagaagc aaccaccact ctattttgtg catcagatgc taaagcatat
181 gagagagagg tacataatgt ttgggccaca catgcctgtg tacccacaga ccccagccca
241 caagaggtag tattgggaaa tgtgacagaa aattttaaca tgtggaaaaa tagcatggta
301 gaacaaatgc atgaggatat aatcagttta tgggatcaaa gcctaaagcc atgcgtaaaa
361 ttaaccccac tctgtgttac tttaaattgc actgatgagt tgaagaataa gactgagtgg
421 aagaatgtta ctaatagtag taactggaaa aagatggaga aaggagaaat aaaaaactgc
481 tcttttaata tcagcacaga cataagagat aggatacagc aacaatatgc acttttttat
541 aaccttgata tagtaccaat agataaggat aaggataata ctagctctaa tactaactat
601 actaactata ggttgataag ttgtaacacc tcagtcatta cacaggcctg tccaaaggta
661 tcctttgagc caattcccat acattattgt gccccggctg gttttgcgat tctaaagtgt
721 aacaataaga agttcaatgg aaaaggacca tgtacaaatg tcagcacagt acagtgtaca
781 catggaatta ggccagtagt atcaactcaa ctgctgttaa atggcagtct agcagaagaa
841 ggggtagtaa ttagatctga caatttcacg gacaatgcta aaaccataat agtacagctg
901 aaagaacctg taaaaattaa ttgtacaaga cccaacaaca atacaagaag aggtatacat
961 ataggaccag ggggagcatt ttattcaaca ggagacataa taggagatat aagacaagca
1021 cattgtaaca ttagtggaac aaaatggaat agcactttaa aacagatagt taaaaaatta
1081 agagaacaat ttaagaataa aacaatagtc tttaatcact cctcaggagg agacccagaa
1141 attgtaatgc acagttttaa ttgtagaggg gaatttttct actgtgattc aacacaactg
1201 tttaatagta cttggaatag tacttggctg aatgataccg aagggttaaa taatactgaa
1261 ggagaaccta ttacactcca atgcagaata aaacaattta taaacatgtg gcaggaagta
1321 ggaaaagcaa tgtatgcccc tcccattgca ggaccaatta attgttcatc aaatattaca
1381 ggactgctat taacaagaga tggtggcaat aacaatgaca ctaaaaacac cgagattttt
1441 agacctggag gaggagatat gagggacaat tggagaagtg aattatataa atataaagta
1501 gtaaaaattg aaccattagg actagcacct accaaggcaa agagaagagt ggtgcagaga
1561 gaaaaaagag cagtgggaat aggagctatg ttccttgggt tcttgggagc agcaggaagc
1621 actatgggcg cagcgtcagt gacgctgacg gtacaggcca gactattatt gtctggtata
1681 gtgcaacagc agaacaattt gctgagggct attgaggcgc aacagcatct gttgcaactc
1741 acagtctggg gcatcaagca gctccaggca agagtcctgg ctgtggaaag atacctaaag
1801 gatcaacagc tcctggggat ctggggttgc tctggaaaac tcatttgcac caccactgtg
1861 ccttggaatg ctagttggag taataaatct ctgaataaga tttgggataa catgacctgg
1921 atggagtggg aaagagaaat tgacaattac acagacttaa tatacacctt acttgaagaa
1981 tcgcagaacc aacaagaaaa gaatgaacaa gaattattgg aattggataa atgggcaaat
2041 ttgtggaatt ggtttagcat aacacattgg ctgtggtata taaaaatatt cataatgata
2101 gtaggaggct tggtaggctt aagaatagtt tttactgtac tttctatagt gaatagagtt
2161 aggaagggat actcaccatt atcgtttcag acccgcttcc cagccccgaa gggacccgac
2221 aggcccgaag gaaccgaaga agaaggtgga gacagagaca gagacagatc cagtcaatta
2281 gtggatggat tcttagcaat tctctgggtc gatcttcgga gcctgtgcct cttcagctac
2341 caccgcttga gagacttaat cttgattgca gcgaggattg tggaacttct gggacgcagg
2401 gggtgggaag ccctcaaata ttggtggaat ctcctacagt attggagtca ggaactaaag
2461 agtagtgcta ttagcttgct caatgccaca gccatagcag tagctgaggg gacagatagg
2521 gttatagaag tattacaaag agctggtaga gctattctcc atatacctag aagaataaga
2581 cagggcttgg aaaggctttt gcta
//
last modified: Tue May 31 10:56 2022