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HIV Sequence Database



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LOCUS	    HM368240		    2604 bp    RNA     linear	VRL 18-SEP-2010
DEFINITION  HIV-1 isolate M1001-C2 from USA envelope glycoprotein (env) gene,
	    partial cds
ACCESSION   HM368240
VERSION     HM368240.1 GI:306847382
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 2604)
            Show all sequences for reference 1
  AUTHORS   Kishko,M., Somasundaran,M., Brewster,F., Sullivan,J.L.,
	    Clapham,P.R. and Luzuriaga,K.
  TITLE     Genotypic and functional properties of early infant HIV-1
	    envelopes.
  JOURNAL   Retrovirology.. 8(1); 67 (2011)
  PUBMED    21843318
REFERENCE   2 (bases 1 to 2604)
            Show all sequences for reference 2
  AUTHORS   Kishko,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (28-MAY-2010) Pediatric Immunology, UMass Medical School,
	    373 Plantation St Suite 318, Worcester, MA 01605, USA
FEATURES             Location/Qualifiers
     source	     1..2604
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="M1001-C2"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="USA"
		     /collection_date="1986"
		     /note="subtype: B"
     gene	     1..>2604
		     /gene="env"
     CDS	     1..>2604
		     /gene="env"
		     /codon_start="1"
		     /transl_table="1"
		     /product="envelope glycoprotein"
		     /protein_id="ADN06160.1"
		     /db_xref="GI:306847383"
		     /translation="MRVMGIRKNYPHLWRWGIMLLGLLMICSATEKLWVTVYYGVPVW
		     KEATTTLFCASDAKAYEREVHNVWATHACVPTDPSPQEVVLGNVTENFNMWKNSMVEQ
		     MHEDIISLWDQSLKPCVKLTPLCVTLNCTDELKNKTEWKNVTNSSNWKKMEKGEIKNC
		     SFNISTDIRDRIQQQYALFYNLDIVPIDKDKDNTSSNTNYTNYRLISCNTSVITQACP
		     KVSFEPIPIHYCAPAGFAILKCNNKKFNGKGPCTNVSTVQCTHGIRPVVSTQLLLNGS
		     LAEEGVVIRSDNFTDNAKTIIVQLKEPVKINCTRPNNNTRRGIHIGPGGAFYSTGDII
		     GDIRQAHCNISGTKWNSTLKQIVKKLREQFKNKTIVFNHSSGGDPEIVMHSFNCRGEF
		     FYCDSTQLFNSTWNSTWLNDTEGLNNTEGEPITLQCRIKQFINMWQEVGKAMYAPPIA
		     GPINCSSNITGLLLTRDGGNNNDTKNTEIFRPGGGDMRDNWRSELYKYKVVKIEPLGL
		     APTKAKRRVVQREKRAVGIGAMFLGFLGAAGSTMGAASVTLTVQARLLLSGIVQQQNN
		     LLRAIEAQQHLLQLTVWGIKQLQARVLAVERYLKDQQLLGIWGCSGKLICTTTVPWNA
		     SWSNKSLNKIWDNMTWMEWEREIDNYTDLIYTLLEESQNQQEKNEQELLELDKWANLW
		     NWFSITHWLWYIKIFIMIVGGLVGLRIVFTVLSIVNRVRKGYSPLSFQTRFPAPKGPD
		     RPEGTEEEGGDRDRDRSSQLVDGFLAILWVDLRSLCLFSYHRLRDLILIAARIVELLG
		     RRGWEALKYWWNLLQYWSQELKSSAISLLNATAIAVAEGTDRVIEVLQRAGRAILHIP
		     RRIRQGLERLLL"
BASE COUNT	909 a	 439 c	  614 g    642 t
ORIGIN
       1 atgagagtga tggggatcag gaagaattat ccgcacttgt ggagatgggg catcatgctc 
      61 cttgggttat taatgatctg tagtgctaca gaaaaattgt gggtcacagt ctattatggg 
     121 gtacctgtgt ggaaagaagc aaccaccact ctattttgtg catcagatgc taaagcatat 
     181 gagagagagg tacataatgt ttgggccaca catgcctgtg tacccacaga ccccagccca 
     241 caagaggtag tattgggaaa tgtgacagaa aattttaaca tgtggaaaaa tagcatggta 
     301 gaacaaatgc atgaggatat aatcagttta tgggatcaaa gcctaaagcc atgcgtaaaa 
     361 ttaaccccac tctgtgttac tttaaattgc actgatgagt tgaagaataa gactgagtgg 
     421 aagaatgtta ctaatagtag taactggaaa aagatggaga aaggagaaat aaaaaactgc 
     481 tcttttaata tcagcacaga cataagagat aggatacagc aacaatatgc acttttttat 
     541 aaccttgata tagtaccaat agataaggat aaggataata ctagctctaa tactaactat 
     601 actaactata ggttgataag ttgtaacacc tcagtcatta cacaggcctg tccaaaggta 
     661 tcctttgagc caattcccat acattattgt gccccggctg gttttgcgat tctaaagtgt 
     721 aacaataaga agttcaatgg aaaaggacca tgtacaaatg tcagcacagt acagtgtaca 
     781 catggaatta ggccagtagt atcaactcaa ctgctgttaa atggcagtct agcagaagaa 
     841 ggggtagtaa ttagatctga caatttcacg gacaatgcta aaaccataat agtacagctg 
     901 aaagaacctg taaaaattaa ttgtacaaga cccaacaaca atacaagaag aggtatacat 
     961 ataggaccag ggggagcatt ttattcaaca ggagacataa taggagatat aagacaagca 
    1021 cattgtaaca ttagtggaac aaaatggaat agcactttaa aacagatagt taaaaaatta 
    1081 agagaacaat ttaagaataa aacaatagtc tttaatcact cctcaggagg agacccagaa 
    1141 attgtaatgc acagttttaa ttgtagaggg gaatttttct actgtgattc aacacaactg 
    1201 tttaatagta cttggaatag tacttggctg aatgataccg aagggttaaa taatactgaa 
    1261 ggagaaccta ttacactcca atgcagaata aaacaattta taaacatgtg gcaggaagta 
    1321 ggaaaagcaa tgtatgcccc tcccattgca ggaccaatta attgttcatc aaatattaca 
    1381 ggactgctat taacaagaga tggtggcaat aacaatgaca ctaaaaacac cgagattttt 
    1441 agacctggag gaggagatat gagggacaat tggagaagtg aattatataa atataaagta 
    1501 gtaaaaattg aaccattagg actagcacct accaaggcaa agagaagagt ggtgcagaga 
    1561 gaaaaaagag cagtgggaat aggagctatg ttccttgggt tcttgggagc agcaggaagc 
    1621 actatgggcg cagcgtcagt gacgctgacg gtacaggcca gactattatt gtctggtata 
    1681 gtgcaacagc agaacaattt gctgagggct attgaggcgc aacagcatct gttgcaactc 
    1741 acagtctggg gcatcaagca gctccaggca agagtcctgg ctgtggaaag atacctaaag 
    1801 gatcaacagc tcctggggat ctggggttgc tctggaaaac tcatttgcac caccactgtg 
    1861 ccttggaatg ctagttggag taataaatct ctgaataaga tttgggataa catgacctgg 
    1921 atggagtggg aaagagaaat tgacaattac acagacttaa tatacacctt acttgaagaa 
    1981 tcgcagaacc aacaagaaaa gaatgaacaa gaattattgg aattggataa atgggcaaat 
    2041 ttgtggaatt ggtttagcat aacacattgg ctgtggtata taaaaatatt cataatgata 
    2101 gtaggaggct tggtaggctt aagaatagtt tttactgtac tttctatagt gaatagagtt 
    2161 aggaagggat actcaccatt atcgtttcag acccgcttcc cagccccgaa gggacccgac 
    2221 aggcccgaag gaaccgaaga agaaggtgga gacagagaca gagacagatc cagtcaatta 
    2281 gtggatggat tcttagcaat tctctgggtc gatcttcgga gcctgtgcct cttcagctac 
    2341 caccgcttga gagacttaat cttgattgca gcgaggattg tggaacttct gggacgcagg 
    2401 gggtgggaag ccctcaaata ttggtggaat ctcctacagt attggagtca ggaactaaag 
    2461 agtagtgcta ttagcttgct caatgccaca gccatagcag tagctgaggg gacagatagg 
    2521 gttatagaag tattacaaag agctggtaga gctattctcc atatacctag aagaataaga 
    2581 cagggcttgg aaaggctttt gcta
//
last modified: Tue May 31 10:56 2022


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