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LOCUS HM368232 2559 bp RNA linear VRL 18-SEP-2010
DEFINITION HIV-1 isolate P1031-F2 from USA envelope glycoprotein (env) gene,
partial cds
ACCESSION HM368232
VERSION HM368232.1 GI:306847366
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 2559)
Show all sequences for reference 1
AUTHORS Kishko,M., Somasundaran,M., Brewster,F., Sullivan,J.L.,
Clapham,P.R. and Luzuriaga,K.
TITLE Genotypic and functional properties of early infant HIV-1
envelopes.
JOURNAL Retrovirology.. 8(1); 67 (2011)
PUBMED 21843318
REFERENCE 2 (bases 1 to 2559)
Show all sequences for reference 2
AUTHORS Kishko,M.
TITLE Direct Submission
JOURNAL Submitted (28-MAY-2010) Pediatric Immunology, UMass Medical School,
373 Plantation St Suite 318, Worcester, MA 01605, USA
FEATURES Location/Qualifiers
source 1..2559
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="P1031-F2"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="USA"
/collection_date="1988"
/note="subtype: B"
gene 1..>2559
/gene="env"
CDS 1..>2559
/gene="env"
/codon_start="1"
/transl_table="1"
/product="envelope glycoprotein"
/protein_id="ADN06152.1"
/db_xref="GI:306847367"
/translation="MRVREIKKNCQHLWRWGIMLLGILMICNATDRLWVTVYYGVPVW
KEATTTLFCASDAKAYEPEVHNVWATHACVPTDPNPQEAVLENVTENFNMWKNNMVEQ
MHEDIISLWDQSLKPCVKLTPLCVTLNCTDLGNATNTNATNTNSSIEGMMEKGEIKNC
SFKVNTEIRDKVKKEHALFYRLDVVPIDNTSYRLISCNTSVITQACPKVSFEPIPIHY
CTPAGFAILKCNDKKFNGTGPCTSVSTVQCTHGISPVISTQLLLNGSLAEEEVIIRSA
NFSNNAKIIIVHLNESVEINCTRPNNNTRKSIHIGPGRAFYTTGEIIGDIRQAHCNLS
RAKWNDTLQRIAIKLREQFGNETTIVFNQSSGGDPEIVMHSFNCGGEFFYCNTTQLFN
STWNSNGGPNNTGGNDTITLPCRIKQIINMWQEVGKAMYAPPIRGQIRCSSNITGLLL
TRDGGNNGTTGTEVFRPGGGDMRDNWRSELYKYKVVQIEPLGVAPTKAKRRVVQREKR
AVGIGAVFLGFLGAAGSTMGAASMTLTVQARLLLSGIVQQQNNLLRAIEAQQHLLQLT
VWGIKQLQARVLAVERYLKDQQLLGIWGCSGKLICTTAVPWNASWSNKSLDEIWDNMT
WMEWDREINNYTNLIYTLIEKSQNQQEKNEQELLELDKWASLWNWFDITNWLWYIKIF
IMIVGGLIGLRIVFTVLSIVNRVRQGYSPLSFQTHPPAARGPDRPEGIEEEGGERDRD
RSGPFVNGFLTLIWIDLRSLCLFLYHRLRDLLLIAARIVELLGRRGWEVLKYWWNILQ
YWSQELKSSAVSLLNATAIAVAEGTDRVIEGLQRAFRAILNIPVRIRQGLERALL"
BASE COUNT 886 a 441 c 611 g 621 t
ORIGIN
1 atgagagtga gggagatcaa gaagaattgt cagcacttgt ggagatgggg catcatgctc
61 cttgggatat taatgatctg taatgctaca gacaggttgt gggtcacagt ttattatggg
121 gtacctgtgt ggaaagaagc aaccaccact ctattttgtg catcagatgc taaagcatat
181 gagccagagg tacataatgt ttgggccaca catgcctgtg tacccacaga ccccaaccca
241 caagaagcag tattggaaaa tgtgacagaa aattttaaca tgtggaaaaa taacatggta
301 gaacagatgc atgaggatat aatcagttta tgggatcaaa gcctaaagcc atgtgtaaag
361 ttaaccccac tctgtgttac tttaaattgc actgatttgg ggaatgctac taataccaat
421 gctactaata ccaatagtag tatcgaggga atgatggaga aaggagaaat aaaaaactgc
481 tcattcaaag tcaacacaga gataagagat aaggtgaaga aagaacatgc acttttttat
541 aggcttgatg tagtaccaat agataataca agctataggt tgataagttg taacacctca
601 gtcattacac aggcctgtcc aaaggtatct tttgagccaa ttcccataca ttattgtacc
661 ccggctggtt ttgcgattct aaaatgtaat gataagaagt tcaatggaac aggaccatgt
721 acaagtgtaa gcacagtaca atgtacacat ggaattagcc cagtaatatc aactcaactg
781 ctgttaaatg gcagtctagc agaagaagag gtgataatca gatccgccaa tttctcgaac
841 aatgctaaaa tcataatagt acatctgaat gaatctgtag aaattaattg tacaagaccc
901 aacaacaata caagaaaaag tatacatata ggaccaggca gagcatttta tacaacagga
961 gaaataatag gagatataag acaagcacat tgtaacctta gtagagcaaa atggaatgac
1021 actttacaac ggatagctat aaaattaaga gaacaatttg ggaatgaaac aacaatagtc
1081 tttaatcaat cctcaggagg ggacccagaa attgtaatgc acagttttaa ttgtggaggg
1141 gaatttttct actgtaatac aacacaactg tttaatagta cttggaatag taatggagga
1201 ccaaataaca ctggaggaaa tgacacaatc acactcccat gcagaataaa acaaattata
1261 aacatgtggc aggaagtagg aaaagcaatg tatgcccctc ccatcagagg acaaattaga
1321 tgttcatcaa atattacagg gctgctatta acaagagatg gtggtaacaa tgggaccacc
1381 gggaccgagg tcttcagacc tggaggagga gatatgaggg acaattggag aagtgaatta
1441 tataaatata aagtagtaca aattgaacca ttaggagtag cacccaccaa ggcaaagaga
1501 agagtggtgc agagagaaaa aagagcagtg ggaataggag ctgtgttcct tgggttcttg
1561 ggagcagcag gaagcactat gggcgcagcg tcaatgacgc tgacggtaca ggccagacta
1621 ttattgtctg gtatagtgca acagcagaac aatttgctga gggctattga ggcgcaacag
1681 catctgttgc aactcacagt ctggggcatc aagcagctcc aggcaagagt cctggctgtg
1741 gaaagatacc taaaggatca acagctcctg gggatttggg gttgctctgg aaaactcatt
1801 tgcaccactg ctgtgccttg gaacgctagt tggagtaata aatctctgga tgagatttgg
1861 gataacatga cctggatgga gtgggacaga gaaattaaca attacacaaa cttaatatac
1921 accttaattg aaaaatcgca gaaccaacaa gaaaagaatg aacaagaatt attagaatta
1981 gataaatggg caagtttgtg gaattggttt gacataacaa attggctgtg gtatataaaa
2041 atattcataa tgatagtagg aggcttgata ggtttaagaa tagtttttac tgtactttct
2101 atagtgaata gagttaggca gggatactca ccattatcgt ttcagaccca ccccccagcc
2161 gcgaggggac ccgacaggcc cgaaggaata gaagaagaag gtggagagag agacagagac
2221 agatccggtc catttgtcaa cggattctta acacttatct ggatcgatct gcggagcctg
2281 tgcctcttcc tctaccaccg cttgagagac ttactcttga ttgcagcgag gattgtggaa
2341 cttctgggac gcagggggtg ggaagtcctc aaatattggt ggaatatcct acagtattgg
2401 agtcaggaac taaagagtag tgctgttagt ttgcttaatg ccacagccat agcagtagct
2461 gaggggacag atagggttat agaaggatta caaagagctt ttagagctat tctcaacata
2521 cctgtaagaa taagacaggg cttggaaagg gctttgcta
//
last modified: Tue May 31 10:56 2022