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LOCUS HM368229 2589 bp RNA linear VRL 18-SEP-2010
DEFINITION HIV-1 isolate M1003-D6 from USA envelope glycoprotein (env) gene,
partial cds
ACCESSION HM368229
VERSION HM368229.1 GI:306847360
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 2589)
Show all sequences for reference 1
AUTHORS Kishko,M., Somasundaran,M., Brewster,F., Sullivan,J.L.,
Clapham,P.R. and Luzuriaga,K.
TITLE Genotypic and functional properties of early infant HIV-1
envelopes.
JOURNAL Retrovirology.. 8(1); 67 (2011)
PUBMED 21843318
REFERENCE 2 (bases 1 to 2589)
Show all sequences for reference 2
AUTHORS Kishko,M.
TITLE Direct Submission
JOURNAL Submitted (28-MAY-2010) Pediatric Immunology, UMass Medical School,
373 Plantation St Suite 318, Worcester, MA 01605, USA
FEATURES Location/Qualifiers
source 1..2589
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="M1003-D6"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="USA"
/collection_date="1990"
/note="subtype: B"
gene 1..>2589
/gene="env"
CDS 1..>2589
/gene="env"
/codon_start="1"
/transl_table="1"
/product="envelope glycoprotein"
/protein_id="ADN06149.1"
/db_xref="GI:306847361"
/translation="MRVKGMKKHCQHLWKWGIMLLGMLMICSAEENLWVTVYYGVPVW
KEATTTLFCASDAKAYSTEKHNVWATHACVPTDPSPREVVLGNVTENFNMWKNDMVEQ
MHEDIISLWDQSLKPCVKLTPLCVTLSCTDKLEDNTNATNSSWGKMEVGEIKNCSFNI
TTITDKRHKEYALFYKLDVIAIDGGNATNNYTNYRLINCNTSVITQACPKVSFEPIPI
HYCAPAGFVILKCNDKKFKGSGPCKNVSTVQCTHGIRPVVSTQLLLNGSLAEEEVVIR
SENFTDNAKTILVQLNKTVKINCTRPNNNTRKSIHIAPGRTFYTTGEIIGDIRQAHCN
ISKAEWNNTLKQIVTKLREQFGNKTIVFNSSSGGDPEIVMHNFNCGGEFFYCNTTQLF
NSTWAWNSTEGSNSTGENGTITLQCRIKQIINMWQEVGKAMYAPPIRGQIKCSSNITG
LILTRDGGNNNGTNNTIEIFRPGGGDMRENWRSELYKYKVVKIEPLGVAPTRAKRRVV
QREKRAVGTIGAMFLGFLGAAGSTMGAASMTLTVQARQLLSGIVQQQNNLLKAIEAQQ
HLLQLTVWGIKQLQARILAVERYLQDQQLLGLWGCSGKLICTTAVPWNTSWSSRWSNK
SLSKIWDNMTWMEWEREIDNYTHIIYNLIEESQNQQEKNEQELLELDKWASLWNWFSI
THWLWYIKIFIMIVGGLVGLRIVFTIISIVSRVRQGYSPLSFQTRLPTPREPDRPEGI
EGEGGEKDRDRSTRLVHGFLALIWDDLRSLFLFSYHRLRDLLLILTRIVELLGRRGWE
ALKYWWNLLQYWSQELKNSAVSLLNATAIAVAGGTDRIIEAAQRIFRVFIHIPRRIRQ
GLERALL"
BASE COUNT 922 a 430 c 604 g 633 t
ORIGIN
1 atgagagtga aggggatgaa gaagcattgt cagcacttat ggaaatgggg catcatgctc
61 cttggaatgt tgatgatctg tagtgctgaa gaaaatttgt gggtcacagt ctattatggg
121 gtacctgtgt ggaaagaagc aaccaccact ctattttgtg catcagatgc taaagcatat
181 tcaacagaaa aacataatgt ctgggccacg catgcctgtg tacccacaga ccccagccca
241 cgagaagtag tattgggaaa tgtgacagaa aattttaaca tgtggaaaaa tgacatggtg
301 gaacaaatgc atgaggatat aatcagttta tgggatcaaa gtctaaagcc atgtgtaaaa
361 ttaaccccac tctgtgttac tttaagttgc actgataaat tggaagataa tactaatgcc
421 actaatagta gttggggaaa aatggaggta ggagaaataa aaaactgctc tttcaatatc
481 accacaataa cagataagag gcataaagaa tatgcacttt tttataaact tgatgtaata
541 gcaatagatg gtggtaatgc tactaataac tataccaact ataggttgat aaattgtaat
601 acttcagtca ttacacaggc ctgtccaaag gtatcctttg agccaattcc catacattac
661 tgtgccccgg ctggttttgt gattctaaag tgtaatgata agaagttcaa gggatcagga
721 ccatgtaaaa atgtcagtac agtacaatgc acacatggaa ttagaccagt agtgtcaact
781 caactattgt taaatggcag cctagctgaa gaagaggtag taattagatc tgaaaatttc
841 acggacaatg ctaaaaccat actagtacag ctaaataaaa ctgtgaaaat taattgtaca
901 agacccaaca acaatacaag aaaaagtata catatagcac cagggagaac attttataca
961 acaggagaaa taataggaga tataagacaa gcacattgta acattagtaa agcagaatgg
1021 aataacactt taaaacagat agtcacaaaa ttaagagaac aatttgggaa taaaacaata
1081 gtttttaact catcctcagg aggggaccca gaaattgtaa tgcacaattt taattgtgga
1141 ggggaatttt tctactgtaa tacaacacaa ctgtttaata gtacttgggc ttggaatagt
1201 actgaagggt caaatagcac tggagaaaat ggcactatca cactccaatg cagaataaaa
1261 caaattataa atatgtggca ggaagtaggg aaagcaatgt atgcccctcc catcagagga
1321 caaattaaat gttcatcaaa tattacaggg ctgatattaa caagagatgg aggtaataat
1381 aatggtacga acaataccat agagatcttc agacctggag gaggagatat gagagaaaat
1441 tggagaagtg aattatataa atataaagta gtaaaaattg aaccattagg agtagcaccc
1501 accagggcaa agagaagagt ggtgcagaga gaaaaaagag cagtgggaac aataggagct
1561 atgttccttg ggttcttggg agcagcagga agcactatgg gcgcagcgtc aatgacgctg
1621 acggtacagg ccagacaatt attgtctggt atagtgcaac agcagaacaa cttgctgaaa
1681 gctattgagg cgcaacagca cctgttgcaa ctcacggtct ggggcatcaa acagctccag
1741 gcaagaatcc tggctgtaga aagataccta caggatcaac agctcctagg gctttggggt
1801 tgctctggaa aactcatctg caccactgct gtgccttgga acactagttg gagtagtagg
1861 tggagtaata aaagtctgag taagatttgg gataacatga cctggatgga gtgggagaga
1921 gaaattgaca attacacaca cataatatat aacttaattg aagaatcgca gaaccagcaa
1981 gaaaagaatg aacaagaatt attggaattg gataagtggg caagtttgtg gaattggttt
2041 agcatcacac actggctgtg gtatataaaa atattcataa tgatagtagg aggcttggta
2101 ggtttaagaa tagtttttac tataatttct atagtgagta gagttaggca gggatattca
2161 ccattgtcat ttcagacccg cctcccaacc ccgagggaac ccgacaggcc cgaaggaatc
2221 gaaggagaag gtggagaaaa agacagagac agatcaactc gattagtgca tggattctta
2281 gcactcatct gggacgacct acggagcctg ttcctcttca gctaccaccg attgagagac
2341 ttactcttaa ttctaacgag gattgtggaa cttctgggac gcagggggtg ggaagccctc
2401 aaatattggt ggaatctcct gcagtattgg agtcaggaac taaagaatag tgctgttagc
2461 ttgttaaatg ccacagcaat agcagtagct ggggggacag ataggattat agaagcagca
2521 caaagaattt ttagagtttt tatccacata cctagaagaa taagacaagg cttggaaagg
2581 gctttgcta
//
last modified: Tue May 31 10:56 2022