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HIV Sequence Database



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LOCUS	    HM368229		    2589 bp    RNA     linear	VRL 18-SEP-2010
DEFINITION  HIV-1 isolate M1003-D6 from USA envelope glycoprotein (env) gene,
	    partial cds
ACCESSION   HM368229
VERSION     HM368229.1 GI:306847360
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 2589)
            Show all sequences for reference 1
  AUTHORS   Kishko,M., Somasundaran,M., Brewster,F., Sullivan,J.L.,
	    Clapham,P.R. and Luzuriaga,K.
  TITLE     Genotypic and functional properties of early infant HIV-1
	    envelopes.
  JOURNAL   Retrovirology.. 8(1); 67 (2011)
  PUBMED    21843318
REFERENCE   2 (bases 1 to 2589)
            Show all sequences for reference 2
  AUTHORS   Kishko,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (28-MAY-2010) Pediatric Immunology, UMass Medical School,
	    373 Plantation St Suite 318, Worcester, MA 01605, USA
FEATURES             Location/Qualifiers
     source	     1..2589
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="M1003-D6"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="USA"
		     /collection_date="1990"
		     /note="subtype: B"
     gene	     1..>2589
		     /gene="env"
     CDS	     1..>2589
		     /gene="env"
		     /codon_start="1"
		     /transl_table="1"
		     /product="envelope glycoprotein"
		     /protein_id="ADN06149.1"
		     /db_xref="GI:306847361"
		     /translation="MRVKGMKKHCQHLWKWGIMLLGMLMICSAEENLWVTVYYGVPVW
		     KEATTTLFCASDAKAYSTEKHNVWATHACVPTDPSPREVVLGNVTENFNMWKNDMVEQ
		     MHEDIISLWDQSLKPCVKLTPLCVTLSCTDKLEDNTNATNSSWGKMEVGEIKNCSFNI
		     TTITDKRHKEYALFYKLDVIAIDGGNATNNYTNYRLINCNTSVITQACPKVSFEPIPI
		     HYCAPAGFVILKCNDKKFKGSGPCKNVSTVQCTHGIRPVVSTQLLLNGSLAEEEVVIR
		     SENFTDNAKTILVQLNKTVKINCTRPNNNTRKSIHIAPGRTFYTTGEIIGDIRQAHCN
		     ISKAEWNNTLKQIVTKLREQFGNKTIVFNSSSGGDPEIVMHNFNCGGEFFYCNTTQLF
		     NSTWAWNSTEGSNSTGENGTITLQCRIKQIINMWQEVGKAMYAPPIRGQIKCSSNITG
		     LILTRDGGNNNGTNNTIEIFRPGGGDMRENWRSELYKYKVVKIEPLGVAPTRAKRRVV
		     QREKRAVGTIGAMFLGFLGAAGSTMGAASMTLTVQARQLLSGIVQQQNNLLKAIEAQQ
		     HLLQLTVWGIKQLQARILAVERYLQDQQLLGLWGCSGKLICTTAVPWNTSWSSRWSNK
		     SLSKIWDNMTWMEWEREIDNYTHIIYNLIEESQNQQEKNEQELLELDKWASLWNWFSI
		     THWLWYIKIFIMIVGGLVGLRIVFTIISIVSRVRQGYSPLSFQTRLPTPREPDRPEGI
		     EGEGGEKDRDRSTRLVHGFLALIWDDLRSLFLFSYHRLRDLLLILTRIVELLGRRGWE
		     ALKYWWNLLQYWSQELKNSAVSLLNATAIAVAGGTDRIIEAAQRIFRVFIHIPRRIRQ
		     GLERALL"
BASE COUNT	922 a	 430 c	  604 g    633 t
ORIGIN
       1 atgagagtga aggggatgaa gaagcattgt cagcacttat ggaaatgggg catcatgctc 
      61 cttggaatgt tgatgatctg tagtgctgaa gaaaatttgt gggtcacagt ctattatggg 
     121 gtacctgtgt ggaaagaagc aaccaccact ctattttgtg catcagatgc taaagcatat 
     181 tcaacagaaa aacataatgt ctgggccacg catgcctgtg tacccacaga ccccagccca 
     241 cgagaagtag tattgggaaa tgtgacagaa aattttaaca tgtggaaaaa tgacatggtg 
     301 gaacaaatgc atgaggatat aatcagttta tgggatcaaa gtctaaagcc atgtgtaaaa 
     361 ttaaccccac tctgtgttac tttaagttgc actgataaat tggaagataa tactaatgcc 
     421 actaatagta gttggggaaa aatggaggta ggagaaataa aaaactgctc tttcaatatc 
     481 accacaataa cagataagag gcataaagaa tatgcacttt tttataaact tgatgtaata 
     541 gcaatagatg gtggtaatgc tactaataac tataccaact ataggttgat aaattgtaat 
     601 acttcagtca ttacacaggc ctgtccaaag gtatcctttg agccaattcc catacattac 
     661 tgtgccccgg ctggttttgt gattctaaag tgtaatgata agaagttcaa gggatcagga 
     721 ccatgtaaaa atgtcagtac agtacaatgc acacatggaa ttagaccagt agtgtcaact 
     781 caactattgt taaatggcag cctagctgaa gaagaggtag taattagatc tgaaaatttc 
     841 acggacaatg ctaaaaccat actagtacag ctaaataaaa ctgtgaaaat taattgtaca 
     901 agacccaaca acaatacaag aaaaagtata catatagcac cagggagaac attttataca 
     961 acaggagaaa taataggaga tataagacaa gcacattgta acattagtaa agcagaatgg 
    1021 aataacactt taaaacagat agtcacaaaa ttaagagaac aatttgggaa taaaacaata 
    1081 gtttttaact catcctcagg aggggaccca gaaattgtaa tgcacaattt taattgtgga 
    1141 ggggaatttt tctactgtaa tacaacacaa ctgtttaata gtacttgggc ttggaatagt 
    1201 actgaagggt caaatagcac tggagaaaat ggcactatca cactccaatg cagaataaaa 
    1261 caaattataa atatgtggca ggaagtaggg aaagcaatgt atgcccctcc catcagagga 
    1321 caaattaaat gttcatcaaa tattacaggg ctgatattaa caagagatgg aggtaataat 
    1381 aatggtacga acaataccat agagatcttc agacctggag gaggagatat gagagaaaat 
    1441 tggagaagtg aattatataa atataaagta gtaaaaattg aaccattagg agtagcaccc 
    1501 accagggcaa agagaagagt ggtgcagaga gaaaaaagag cagtgggaac aataggagct 
    1561 atgttccttg ggttcttggg agcagcagga agcactatgg gcgcagcgtc aatgacgctg 
    1621 acggtacagg ccagacaatt attgtctggt atagtgcaac agcagaacaa cttgctgaaa 
    1681 gctattgagg cgcaacagca cctgttgcaa ctcacggtct ggggcatcaa acagctccag 
    1741 gcaagaatcc tggctgtaga aagataccta caggatcaac agctcctagg gctttggggt 
    1801 tgctctggaa aactcatctg caccactgct gtgccttgga acactagttg gagtagtagg 
    1861 tggagtaata aaagtctgag taagatttgg gataacatga cctggatgga gtgggagaga 
    1921 gaaattgaca attacacaca cataatatat aacttaattg aagaatcgca gaaccagcaa 
    1981 gaaaagaatg aacaagaatt attggaattg gataagtggg caagtttgtg gaattggttt 
    2041 agcatcacac actggctgtg gtatataaaa atattcataa tgatagtagg aggcttggta 
    2101 ggtttaagaa tagtttttac tataatttct atagtgagta gagttaggca gggatattca 
    2161 ccattgtcat ttcagacccg cctcccaacc ccgagggaac ccgacaggcc cgaaggaatc 
    2221 gaaggagaag gtggagaaaa agacagagac agatcaactc gattagtgca tggattctta 
    2281 gcactcatct gggacgacct acggagcctg ttcctcttca gctaccaccg attgagagac 
    2341 ttactcttaa ttctaacgag gattgtggaa cttctgggac gcagggggtg ggaagccctc 
    2401 aaatattggt ggaatctcct gcagtattgg agtcaggaac taaagaatag tgctgttagc 
    2461 ttgttaaatg ccacagcaat agcagtagct ggggggacag ataggattat agaagcagca 
    2521 caaagaattt ttagagtttt tatccacata cctagaagaa taagacaagg cttggaaagg 
    2581 gctttgcta
//
last modified: Tue May 31 10:56 2022


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