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LOCUS HM164112 1302 bp RNA linear VRL 14-SEP-2010
DEFINITION HIV-1 isolate 2004.KE.1.079.KiBS.V3 from Kenya pol protein (pol)
gene, partial cds
ACCESSION HM164112
VERSION HM164112.1 GI:306516327
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1302)
Show all sequences for reference 1
AUTHORS Zeh,C., Weidle,P.J., Nafisa,L., Lwamba,H.M., Okonji,J., Anyango,E.,
Bondo,P., Masaba,R., Fowler,M.G., Nkengasong,J.N., Thigpen,M.C. and
Thomas,T.
TITLE HIV-1 drug resistance emergence among breastfeeding infants born to
HIV-infected mothers during a single-arm trial of
triple-antiretroviral prophylaxis for prevention of mother-to-child
transmission: a secondary analysis.
JOURNAL PLoS. Med.. 8(3); e1000430 (2011)
PUBMED 21468304
REFERENCE 2 (bases 1 to 1302)
Show all sequences for reference 2
AUTHORS Zeh,C., Weidle,P.J., Nafisa,L., Lwamba,H.M., Okonji,J., Anyango,E.,
Bondo,P., Masaba,R., Fowler,M.G., Nkengasong,J.N., Thigpen,M.C. and
Thomas,T.
TITLE Direct Submission
JOURNAL Submitted (29-APR-2010) HIV-Research Laboratory, Centers for
Disease Control and Prevention (CDC), Off Busia Road, 1578, Kisumu,
Nyanza 40100, Kenya
FEATURES Location/Qualifiers
source 1..1302
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="2004.KE.1.079.KiBS.V3"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="Kenya"
/collection_date="2004"
gene <1..>1302
/gene="pol"
CDS <1..>1302
/gene="pol"
/note="contains protease and reverse transcriptase"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="ADM96042.1"
/db_xref="GI:306516328"
/translation="PQITLWQRPLVTVKVEGQLKEALLDTGADDTVLEDINLPGKWKP
KMIGGIGGFIKVKQYDQILIEICGKKAIGTVLVGPTPVNIIGRNMLTQIGCTLNFPIS
PITTVPVKLKPGMDGPKVKQWPLTAEKIKALTEICTEMEKEGKISKIGPENPYNTPIF
AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
LFEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPE
MVIXQYMDDLYVXSDLEIGQHRTKIZELREHLLKWGFTTPDKKHQKEPPFLWMGYELH
PDKWTVQPIKLPEKESWTVNDLQKLVGKLNWASQIYSGIKVKQLCKCLRGTKTLTEVV
PLTEEAELELAENREILKEPVHGVYYDPSKELIAELQKQGQG"
BASE COUNT 531 a 209 c 264 g 293 t 5 other
ORIGIN
1 cctcaaatca ctctttggca acgaccctta gtcacagtaa aagtagaagg acagctaaaa
61 gaagctctat tagatacagg agcagatgat acagtgttag aagacataaa tttgccagga
121 aaatggaaac caaaaatgat agggggaatt ggaggattca tcaaggtaaa acagtatgat
181 cagatactta tagaaatttg tggaaaaaag gctataggta cagtattggt aggacctaca
241 cctgtcaaca taattggaag aaatatgttg acccagattg gttgtactct aaatttccca
301 attagtccta ttactactgt accagtaaaa ttaaagccag gaatggatgg cccaaaggtt
361 aaacaatggc cattaacagc agaaaaaata aaagcattaa cagaaatttg tacagaaatg
421 gaaaaagaag gaaaaatttc aaaaattggg cctgaaaatc catacaatac tccaatattt
481 gctataaaga aaaaagacag cactaaatgg agaaaattag tagattttag agagcttaat
541 aaaagaactc aagacttttg ggaagttcaa ttgggaatac cgcatccagc gggcttaaaa
601 aagaaaaaat cagtaacagt actagatgtg ggggacgcat atttttcagt gcccttattt
661 gaagatttta gaaaatacac tgcattcacc atacctagta taaacaatga gacaccagga
721 attagatatc agtacaatgt gcttccacaa ggatggaaag gatcaccggc aatattccaa
781 agtagcatga caaaaatctt agaacctttt agaaaacaaa atccagaaat ggttatctrt
841 caatacatgg atgacttgta tgtggsatct gacttagaaa tagggcaaca tagaacaaaa
901 atasaggaat tgagagaaca cctgttgaag tggggattca cyacaccaga caaaaagcat
961 cagaaagaac ctccatttct gtggatgggw tatgaactcc atcctgataa atggacagta
1021 cagcctataa aactaccaga aaaagaaagc tggactgtca atgatctaca gaagttagta
1081 ggaaaattaa attgggcaag ccagatttat tcaggaatta aagtaaagca attatgcaaa
1141 tgccttaggg gaaccaaaac actgacagaa gtagtaccac tgacagaaga agcagaatta
1201 gaactggcag aaaacaggga aattctaaaa gagccagtac atggggtgta ttatgaccca
1261 tcaaaagaat taatagcaga actacagaaa caagggcaag gc
//
last modified: Tue May 31 10:56 2022