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LOCUS	    HM164112		    1302 bp    RNA     linear	VRL 14-SEP-2010
DEFINITION  HIV-1 isolate 2004.KE.1.079.KiBS.V3 from Kenya pol protein (pol)
	    gene, partial cds
ACCESSION   HM164112
VERSION     HM164112.1 GI:306516327
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1302)
            Show all sequences for reference 1
  AUTHORS   Zeh,C., Weidle,P.J., Nafisa,L., Lwamba,H.M., Okonji,J., Anyango,E.,
	    Bondo,P., Masaba,R., Fowler,M.G., Nkengasong,J.N., Thigpen,M.C. and
	    Thomas,T.
  TITLE     HIV-1 drug resistance emergence among breastfeeding infants born to
	    HIV-infected mothers during a single-arm trial of
	    triple-antiretroviral prophylaxis for prevention of mother-to-child
	    transmission: a secondary analysis.
  JOURNAL   PLoS. Med.. 8(3); e1000430 (2011)
  PUBMED    21468304
REFERENCE   2 (bases 1 to 1302)
            Show all sequences for reference 2
  AUTHORS   Zeh,C., Weidle,P.J., Nafisa,L., Lwamba,H.M., Okonji,J., Anyango,E.,
	    Bondo,P., Masaba,R., Fowler,M.G., Nkengasong,J.N., Thigpen,M.C. and
	    Thomas,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-APR-2010) HIV-Research Laboratory, Centers for
	    Disease Control and Prevention (CDC), Off Busia Road, 1578, Kisumu,
	    Nyanza 40100, Kenya
FEATURES             Location/Qualifiers
     source	     1..1302
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="2004.KE.1.079.KiBS.V3"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="Kenya"
		     /collection_date="2004"
     gene	     <1..>1302
		     /gene="pol"
     CDS	     <1..>1302
		     /gene="pol"
		     /note="contains protease and reverse transcriptase"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="ADM96042.1"
		     /db_xref="GI:306516328"
		     /translation="PQITLWQRPLVTVKVEGQLKEALLDTGADDTVLEDINLPGKWKP
		     KMIGGIGGFIKVKQYDQILIEICGKKAIGTVLVGPTPVNIIGRNMLTQIGCTLNFPIS
		     PITTVPVKLKPGMDGPKVKQWPLTAEKIKALTEICTEMEKEGKISKIGPENPYNTPIF
		     AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
		     LFEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPE
		     MVIXQYMDDLYVXSDLEIGQHRTKIZELREHLLKWGFTTPDKKHQKEPPFLWMGYELH
		     PDKWTVQPIKLPEKESWTVNDLQKLVGKLNWASQIYSGIKVKQLCKCLRGTKTLTEVV
		     PLTEEAELELAENREILKEPVHGVYYDPSKELIAELQKQGQG"
BASE COUNT	531 a	 209 c	  264 g    293 t      5 other
ORIGIN
       1 cctcaaatca ctctttggca acgaccctta gtcacagtaa aagtagaagg acagctaaaa 
      61 gaagctctat tagatacagg agcagatgat acagtgttag aagacataaa tttgccagga 
     121 aaatggaaac caaaaatgat agggggaatt ggaggattca tcaaggtaaa acagtatgat 
     181 cagatactta tagaaatttg tggaaaaaag gctataggta cagtattggt aggacctaca 
     241 cctgtcaaca taattggaag aaatatgttg acccagattg gttgtactct aaatttccca 
     301 attagtccta ttactactgt accagtaaaa ttaaagccag gaatggatgg cccaaaggtt 
     361 aaacaatggc cattaacagc agaaaaaata aaagcattaa cagaaatttg tacagaaatg 
     421 gaaaaagaag gaaaaatttc aaaaattggg cctgaaaatc catacaatac tccaatattt 
     481 gctataaaga aaaaagacag cactaaatgg agaaaattag tagattttag agagcttaat 
     541 aaaagaactc aagacttttg ggaagttcaa ttgggaatac cgcatccagc gggcttaaaa 
     601 aagaaaaaat cagtaacagt actagatgtg ggggacgcat atttttcagt gcccttattt 
     661 gaagatttta gaaaatacac tgcattcacc atacctagta taaacaatga gacaccagga 
     721 attagatatc agtacaatgt gcttccacaa ggatggaaag gatcaccggc aatattccaa 
     781 agtagcatga caaaaatctt agaacctttt agaaaacaaa atccagaaat ggttatctrt 
     841 caatacatgg atgacttgta tgtggsatct gacttagaaa tagggcaaca tagaacaaaa 
     901 atasaggaat tgagagaaca cctgttgaag tggggattca cyacaccaga caaaaagcat 
     961 cagaaagaac ctccatttct gtggatgggw tatgaactcc atcctgataa atggacagta 
    1021 cagcctataa aactaccaga aaaagaaagc tggactgtca atgatctaca gaagttagta 
    1081 ggaaaattaa attgggcaag ccagatttat tcaggaatta aagtaaagca attatgcaaa 
    1141 tgccttaggg gaaccaaaac actgacagaa gtagtaccac tgacagaaga agcagaatta 
    1201 gaactggcag aaaacaggga aattctaaaa gagccagtac atggggtgta ttatgaccca 
    1261 tcaaaagaat taatagcaga actacagaaa caagggcaag gc
//
last modified: Tue May 31 10:56 2022


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