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LOCUS HM070535 2622 bp RNA linear VRL 16-MAR-2011
DEFINITION HIV-1 isolate 1209_A7 from Malawi envelope glycoprotein (env) gene,
complete cds; and vpu protein (vpu), rev protein (rev), and tat
protein (tat) genes, partial cds
ACCESSION HM070535
VERSION HM070535.1 GI:325966062
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 2622)
Show all sequences for reference 1
AUTHORS Salazar-Gonzalez,J.F., Salazar,M.G., Learn,G.H., Fouda,G.G.,
Kang,H.H., Mahlokozera,T., Wilks,A.B., Lovingood,R.V., Stacey,A.,
Kalilani,L., Meshnick,S.R., Borrow,P., Montefiori,D.C., Denny,T.N.,
Letvin,N.L., Shaw,G.M., Hahn,B.H. and Permar,S.R.
CONSRTM Center for HIV/AIDS Vaccine Immunology A0167854
TITLE Origin and Evolution of HIV-1 in Breast Milk Determined by
Single-Genome Amplification and Sequencing
JOURNAL J. Virol. 85 (6), 2751-2763 (2011)
PUBMED 21191008
REFERENCE 2 (bases 1 to 2622)
Show all sequences for reference 2
AUTHORS Salazar-Gonzalez,J.F.
CONSRTM Center for HIV/AIDS Vaccine Immunology A0167854
TITLE Direct Submission
JOURNAL Submitted (08-APR-2010) Department of Medicine, Kaul 806,
University of Alabama at Birmingham, 720 20th Street South,
Birmingham, AL 35294, USA
COMMENT Annotation information was provided by the author. Some of the
information does not have GenBank feature identifiers and is being
provided in the comment section. Information in this section is
searchable in HIV Database at Los Alamos (www.hiv.lanl.gov).;
##HIVDataBaseData-START## Patient code 715901209 Sequence Name
1209_A7 Subtype C Patient cohort CHAVI 009 Patient sex F Viral Load
3,070 Sample city Blantyre Sample date 10.02.08 Sample tissue
plasma Culture method uncultured Amplification strategy single
genome amplification DBID 3588080746 ##HIVDataBaseData-END##
FEATURES Location/Qualifiers
source 1..2622
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="1209_A7"
/isolation_source="HIV-infected lactating woman at 4 weeks
post-childbirth"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="Malawi"
/collection_date="02-Oct-2008"
/note="subtype: C"
gene 1..2622
/gene="env"
CDS 1..2622
/gene="env"
/codon_start="1"
/transl_table="1"
/product="envelope glycoprotein"
/protein_id="ADZ46745.1"
/db_xref="GI:325966066"
/translation="MIVMGIQRNCQRWWIWGVLGFWMLMICNGNLWVTVYYGVPVWRE
AKTTLFCASDAKAYDKEVHNVWATHACVPTDPNPQEMILENVTENFNMWKNDMVDQMH
EDIISLWDQSLKPCVKLTPLCVTLNCTNANITGNANSTGDPGNNSSSRANETMKGEMR
SCSFNITTEVQDKKRKENALFYRLDIVPLDSSSSDNSSFREYRLIHCNTSTITQACPK
VNFDPIPIYYCAPAGYAILKCNNKTFNGTGPCNNVSTVQCTHGIKPVVSTQLLLNGSL
AEEEIVIRSENLTNNAKTIIVHLKEAVEINCTRPGNNTRKSVRIGPGQTFYATGDVIG
DIRQAHCNISREKWNETLRKVGEKLHRHFPNNKTITFASSSGGDLEITTHSFNCRGEF
FYCNTSALFNSTWRCDNTSCSRVSNNTDNSPNITLQCRIKQIINMWQGVGRAMYASPI
AGNITCRSNITGLLLTWDGDNSNNTETFRPGGGNMKDNWRSELYKYKVVEIKPLGIAP
TGAKRRVVERGKRAVTLGAVFLGFLGAAGSTMGAASITLTVQARQLLSGIVQQQSNLL
RAIEAQQHLLQLTVWGIKQLQARVLAIERYLQDQQLLGIWGCSGKLICTTSVRWNSSW
SNKTYNEIWNNMTWMQWDKEINNYTGLIYSLLEESQKQQENNEKDLLALDSWQNLWNW
FDISQWLWYIKIFIMIVGGLIGLRIIFAVLSIVNRVRQGYSPLSFQTLIPNPRGPDRL
ERIEEEGGEQDKGRSIRLVNGFLALIWDDLRSLCLFSYHRLRDFILIAVRAVELLGHS
SLRGLQRGWEILKYLGSLVQYWGLELKKSAISLLDTIAIAVAEGTDRIIEAAQRIGRA
IYNIPRRIRQGFEAALQ"
gene <1..83
/gene="vpu"
CDS <1..83
/gene="vpu"
/codon_start="3"
/transl_table="1"
/product="vpu protein"
/protein_id="ADZ46744.1"
/db_xref="GI:325966065"
/translation="DSDGDTEELSTMVDMGRLRLLDVNDL"
gene <2185..2432
/gene="rev"
CDS <2185..2432
/gene="rev"
/codon_start="3"
/transl_table="1"
/product="rev protein"
/protein_id="ADZ46743.1"
/db_xref="GI:325966064"
/translation="PYPKPEGTRQARKNRRRRWRARQRQIHSISERILSAYLGRPAEP
VPFQLPPIERLHIDCSESSGTSGTQQSQGTTEGVGNP"
gene <2185..2275
/gene="tat"
CDS <2185..2275
/gene="tat"
/codon_start="2"
/transl_table="1"
/product="tat protein"
/protein_id="ADZ46742.1"
/db_xref="GI:325966063"
/translation="PLSQTRGDPTGSKESKKKVESKTKADPFD"
BASE COUNT 921 a 435 c 613 g 653 t
ORIGIN
1 atgatagtga tggggataca gaggaattgt caacgatggt ggatatgggg cgtcttaggc
61 ttttggatgt taatgatttg taatgggaac ttgtgggtca cagtatacta tggggtacct
121 gtgtggagag aagcaaaaac tactctattt tgtgcatcag atgctaaagc atatgacaaa
181 gaagtgcata atgtctgggc tacacatgcc tgtgtaccca cagaccccaa cccacaagaa
241 atgattttgg aaaatgtaac agaaaatttt aatatgtgga aaaatgatat ggtggatcag
301 atgcatgagg atataatcag tttatgggat caaagcctaa agccatgtgt aaagttgacc
361 ccactctgtg tcactttgaa ctgtacgaat gctaatatta ctggtaatgc taatagtact
421 ggtgatcctg gtaataatag tagtagtaga gccaatgaaa ctatgaaagg agaaatgaga
481 agctgctctt tcaatataac cacagaagta caagataaga aaaggaaaga aaatgcactt
541 ttttataggc ttgatatagt accacttgac agctctagtt ctgacaactc tagctttaga
601 gagtatagat taatacattg taatacctca accataacac aagcctgtcc aaaggtcaat
661 tttgacccaa ttcctatata ttattgtgct ccagctggtt atgcgattct aaagtgtaat
721 aataagacat tcaatggaac aggaccatgc aataatgtca gcacagtaca atgtacacat
781 ggaattaagc cagtagtatc aactcaacta ctgttaaatg gtagcctagc agaggaagag
841 atagtaatca gatctgaaaa tctgacaaac aatgccaaaa caataatagt gcatctcaag
901 gaagctgtag agattaattg tacaagacct ggcaataata caaggaaaag tgtgaggata
961 ggaccaggac aaacatttta tgcaacagga gatgtaatag gagatataag gcaagcacat
1021 tgtaacatta gtagagagaa atggaatgaa actttacgaa aggtaggtga aaaattacat
1081 agacacttcc ctaataataa aaccataaca tttgcatcat cctcaggagg ggacctggaa
1141 attacaacac atagctttaa ttgtagagga gaatttttct actgcaatac ctcagcactg
1201 tttaatagta catggaggtg tgataatact tcatgttcac gtgtgtctaa taatacagat
1261 aattccccaa acatcacact ccaatgcaga ataaaacaaa ttataaacat gtggcagggg
1321 gtaggaagag caatgtatgc ctctcccatt gcaggaaaca taacatgtag atcaaacatt
1381 acaggactac tattgacatg ggatggagat aatagtaata atacagagac attcagacct
1441 ggaggaggaa atatgaaaga caattggaga agtgaattat ataaatataa agtggtagaa
1501 attaagccat taggaatagc acctactggg gcaaaaagga gagtggtgga gagagggaaa
1561 agagcagtga cactaggagc tgtgttcctt gggttcttgg gagcagcagg aagcactatg
1621 ggcgcggcgt caataacgct gacggtacag gccagacaat tattgtctgg tatagtgcaa
1681 cagcagagca atctgctgag agctatagag gcgcagcagc atctgttgca actcacggtc
1741 tggggcatta aacagctcca ggcaagagtc ctggctatag aaagatacct acaggatcaa
1801 cagctcctag ggatttgggg ctgctctgga aaactcatct gcaccactag tgtgcgttgg
1861 aactctagtt ggagcaataa aacttataat gagatttgga acaacatgac ctggatgcaa
1921 tgggataaag aaattaataa ttacacaggc ttaatataca gtttgcttga agaatcgcaa
1981 aaacagcagg aaaacaatga aaaagattta ctagcattgg acagttggca aaacctgtgg
2041 aactggtttg acatatcaca atggctgtgg tatataaaaa tattcataat gatagtagga
2101 ggcttgatag gtttaagaat aatttttgct gtgctttcta tagtgaatag agttaggcag
2161 ggatactcac ctttatcatt tcagaccctt atcccaaacc cgaggggacc cgacaggctc
2221 gaaagaatcg aagaagaagg tggagagcaa gacaaaggca gatccattcg attagtgaac
2281 ggattcttag cgcttatctg ggacgacctg cggagcctgt gccttttcag ttaccaccga
2341 ttgagagact tcatattgat tgcagtgaga gcagtggaac ttctgggaca cagcagtctc
2401 aggggactac agagggggtg ggaaatcctt aagtatctgg gaagccttgt acaatattgg
2461 ggtctggaac taaaaaagag tgctattagt ctgcttgata ctatagcaat agcagtagct
2521 gaaggaacag atagaattat agaagcagca caaagaattg gtagagctat ctacaacata
2581 cctagaagaa taagacaggg ttttgaagca gctttgcaat aa
//
last modified: Tue May 31 10:56 2022