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LOCUS	    HM070535		    2622 bp    RNA     linear	VRL 16-MAR-2011
DEFINITION  HIV-1 isolate 1209_A7 from Malawi envelope glycoprotein (env) gene,
	    complete cds; and vpu protein (vpu), rev protein (rev), and tat
	    protein (tat) genes, partial cds
ACCESSION   HM070535
VERSION     HM070535.1 GI:325966062
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 2622)
            Show all sequences for reference 1
  AUTHORS   Salazar-Gonzalez,J.F., Salazar,M.G., Learn,G.H., Fouda,G.G.,
	    Kang,H.H., Mahlokozera,T., Wilks,A.B., Lovingood,R.V., Stacey,A.,
	    Kalilani,L., Meshnick,S.R., Borrow,P., Montefiori,D.C., Denny,T.N.,
	    Letvin,N.L., Shaw,G.M., Hahn,B.H. and Permar,S.R.
  CONSRTM   Center for HIV/AIDS Vaccine Immunology A0167854
  TITLE     Origin and Evolution of HIV-1 in Breast Milk Determined by
	    Single-Genome Amplification and Sequencing
  JOURNAL   J. Virol. 85 (6), 2751-2763 (2011)
  PUBMED    21191008
REFERENCE   2 (bases 1 to 2622)
            Show all sequences for reference 2
  AUTHORS   Salazar-Gonzalez,J.F.
  CONSRTM   Center for HIV/AIDS Vaccine Immunology A0167854
  TITLE     Direct Submission
  JOURNAL   Submitted (08-APR-2010) Department of Medicine, Kaul 806,
	    University of Alabama at Birmingham, 720 20th Street South,
	    Birmingham, AL 35294, USA
COMMENT     Annotation information was provided by the author. Some of the
	    information does not have GenBank feature identifiers and is being
	    provided in the comment section. Information in this section is
	    searchable in HIV Database at Los Alamos (www.hiv.lanl.gov).;
	    ##HIVDataBaseData-START## Patient code 715901209 Sequence Name
	    1209_A7 Subtype C Patient cohort CHAVI 009 Patient sex F Viral Load
	    3,070 Sample city Blantyre Sample date 10.02.08 Sample tissue
	    plasma Culture method uncultured Amplification strategy single
	    genome amplification DBID 3588080746 ##HIVDataBaseData-END##
FEATURES             Location/Qualifiers
     source	     1..2622
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="1209_A7"
		     /isolation_source="HIV-infected lactating woman at 4 weeks
		     post-childbirth"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="Malawi"
		     /collection_date="02-Oct-2008"
		     /note="subtype: C"
     gene	     1..2622
		     /gene="env"
     CDS	     1..2622
		     /gene="env"
		     /codon_start="1"
		     /transl_table="1"
		     /product="envelope glycoprotein"
		     /protein_id="ADZ46745.1"
		     /db_xref="GI:325966066"
		     /translation="MIVMGIQRNCQRWWIWGVLGFWMLMICNGNLWVTVYYGVPVWRE
		     AKTTLFCASDAKAYDKEVHNVWATHACVPTDPNPQEMILENVTENFNMWKNDMVDQMH
		     EDIISLWDQSLKPCVKLTPLCVTLNCTNANITGNANSTGDPGNNSSSRANETMKGEMR
		     SCSFNITTEVQDKKRKENALFYRLDIVPLDSSSSDNSSFREYRLIHCNTSTITQACPK
		     VNFDPIPIYYCAPAGYAILKCNNKTFNGTGPCNNVSTVQCTHGIKPVVSTQLLLNGSL
		     AEEEIVIRSENLTNNAKTIIVHLKEAVEINCTRPGNNTRKSVRIGPGQTFYATGDVIG
		     DIRQAHCNISREKWNETLRKVGEKLHRHFPNNKTITFASSSGGDLEITTHSFNCRGEF
		     FYCNTSALFNSTWRCDNTSCSRVSNNTDNSPNITLQCRIKQIINMWQGVGRAMYASPI
		     AGNITCRSNITGLLLTWDGDNSNNTETFRPGGGNMKDNWRSELYKYKVVEIKPLGIAP
		     TGAKRRVVERGKRAVTLGAVFLGFLGAAGSTMGAASITLTVQARQLLSGIVQQQSNLL
		     RAIEAQQHLLQLTVWGIKQLQARVLAIERYLQDQQLLGIWGCSGKLICTTSVRWNSSW
		     SNKTYNEIWNNMTWMQWDKEINNYTGLIYSLLEESQKQQENNEKDLLALDSWQNLWNW
		     FDISQWLWYIKIFIMIVGGLIGLRIIFAVLSIVNRVRQGYSPLSFQTLIPNPRGPDRL
		     ERIEEEGGEQDKGRSIRLVNGFLALIWDDLRSLCLFSYHRLRDFILIAVRAVELLGHS
		     SLRGLQRGWEILKYLGSLVQYWGLELKKSAISLLDTIAIAVAEGTDRIIEAAQRIGRA
		     IYNIPRRIRQGFEAALQ"
     gene	     <1..83
		     /gene="vpu"
     CDS	     <1..83
		     /gene="vpu"
		     /codon_start="3"
		     /transl_table="1"
		     /product="vpu protein"
		     /protein_id="ADZ46744.1"
		     /db_xref="GI:325966065"
		     /translation="DSDGDTEELSTMVDMGRLRLLDVNDL"
     gene	     <2185..2432
		     /gene="rev"
     CDS	     <2185..2432
		     /gene="rev"
		     /codon_start="3"
		     /transl_table="1"
		     /product="rev protein"
		     /protein_id="ADZ46743.1"
		     /db_xref="GI:325966064"
		     /translation="PYPKPEGTRQARKNRRRRWRARQRQIHSISERILSAYLGRPAEP
		     VPFQLPPIERLHIDCSESSGTSGTQQSQGTTEGVGNP"
     gene	     <2185..2275
		     /gene="tat"
     CDS	     <2185..2275
		     /gene="tat"
		     /codon_start="2"
		     /transl_table="1"
		     /product="tat protein"
		     /protein_id="ADZ46742.1"
		     /db_xref="GI:325966063"
		     /translation="PLSQTRGDPTGSKESKKKVESKTKADPFD"
BASE COUNT	921 a	 435 c	  613 g    653 t
ORIGIN
       1 atgatagtga tggggataca gaggaattgt caacgatggt ggatatgggg cgtcttaggc 
      61 ttttggatgt taatgatttg taatgggaac ttgtgggtca cagtatacta tggggtacct 
     121 gtgtggagag aagcaaaaac tactctattt tgtgcatcag atgctaaagc atatgacaaa 
     181 gaagtgcata atgtctgggc tacacatgcc tgtgtaccca cagaccccaa cccacaagaa 
     241 atgattttgg aaaatgtaac agaaaatttt aatatgtgga aaaatgatat ggtggatcag 
     301 atgcatgagg atataatcag tttatgggat caaagcctaa agccatgtgt aaagttgacc 
     361 ccactctgtg tcactttgaa ctgtacgaat gctaatatta ctggtaatgc taatagtact 
     421 ggtgatcctg gtaataatag tagtagtaga gccaatgaaa ctatgaaagg agaaatgaga 
     481 agctgctctt tcaatataac cacagaagta caagataaga aaaggaaaga aaatgcactt 
     541 ttttataggc ttgatatagt accacttgac agctctagtt ctgacaactc tagctttaga 
     601 gagtatagat taatacattg taatacctca accataacac aagcctgtcc aaaggtcaat 
     661 tttgacccaa ttcctatata ttattgtgct ccagctggtt atgcgattct aaagtgtaat 
     721 aataagacat tcaatggaac aggaccatgc aataatgtca gcacagtaca atgtacacat 
     781 ggaattaagc cagtagtatc aactcaacta ctgttaaatg gtagcctagc agaggaagag 
     841 atagtaatca gatctgaaaa tctgacaaac aatgccaaaa caataatagt gcatctcaag 
     901 gaagctgtag agattaattg tacaagacct ggcaataata caaggaaaag tgtgaggata 
     961 ggaccaggac aaacatttta tgcaacagga gatgtaatag gagatataag gcaagcacat 
    1021 tgtaacatta gtagagagaa atggaatgaa actttacgaa aggtaggtga aaaattacat 
    1081 agacacttcc ctaataataa aaccataaca tttgcatcat cctcaggagg ggacctggaa 
    1141 attacaacac atagctttaa ttgtagagga gaatttttct actgcaatac ctcagcactg 
    1201 tttaatagta catggaggtg tgataatact tcatgttcac gtgtgtctaa taatacagat 
    1261 aattccccaa acatcacact ccaatgcaga ataaaacaaa ttataaacat gtggcagggg 
    1321 gtaggaagag caatgtatgc ctctcccatt gcaggaaaca taacatgtag atcaaacatt 
    1381 acaggactac tattgacatg ggatggagat aatagtaata atacagagac attcagacct 
    1441 ggaggaggaa atatgaaaga caattggaga agtgaattat ataaatataa agtggtagaa 
    1501 attaagccat taggaatagc acctactggg gcaaaaagga gagtggtgga gagagggaaa 
    1561 agagcagtga cactaggagc tgtgttcctt gggttcttgg gagcagcagg aagcactatg 
    1621 ggcgcggcgt caataacgct gacggtacag gccagacaat tattgtctgg tatagtgcaa 
    1681 cagcagagca atctgctgag agctatagag gcgcagcagc atctgttgca actcacggtc 
    1741 tggggcatta aacagctcca ggcaagagtc ctggctatag aaagatacct acaggatcaa 
    1801 cagctcctag ggatttgggg ctgctctgga aaactcatct gcaccactag tgtgcgttgg 
    1861 aactctagtt ggagcaataa aacttataat gagatttgga acaacatgac ctggatgcaa 
    1921 tgggataaag aaattaataa ttacacaggc ttaatataca gtttgcttga agaatcgcaa 
    1981 aaacagcagg aaaacaatga aaaagattta ctagcattgg acagttggca aaacctgtgg 
    2041 aactggtttg acatatcaca atggctgtgg tatataaaaa tattcataat gatagtagga 
    2101 ggcttgatag gtttaagaat aatttttgct gtgctttcta tagtgaatag agttaggcag 
    2161 ggatactcac ctttatcatt tcagaccctt atcccaaacc cgaggggacc cgacaggctc 
    2221 gaaagaatcg aagaagaagg tggagagcaa gacaaaggca gatccattcg attagtgaac 
    2281 ggattcttag cgcttatctg ggacgacctg cggagcctgt gccttttcag ttaccaccga 
    2341 ttgagagact tcatattgat tgcagtgaga gcagtggaac ttctgggaca cagcagtctc 
    2401 aggggactac agagggggtg ggaaatcctt aagtatctgg gaagccttgt acaatattgg 
    2461 ggtctggaac taaaaaagag tgctattagt ctgcttgata ctatagcaat agcagtagct 
    2521 gaaggaacag atagaattat agaagcagca caaagaattg gtagagctat ctacaacata 
    2581 cctagaagaa taagacaggg ttttgaagca gctttgcaat aa
//
last modified: Tue May 31 10:56 2022


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