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LOCUS	    HM070452		    2580 bp    RNA     linear	VRL 16-MAR-2011
DEFINITION  HIV-1 isolate 0301_A8 from Malawi envelope glycoprotein (env) gene,
	    complete cds; and vpu protein (vpu), rev protein (rev), and tat
	    protein (tat) genes, partial cds
ACCESSION   HM070452
VERSION     HM070452.1 GI:325965659
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 2580)
            Show all sequences for reference 1
  AUTHORS   Salazar-Gonzalez,J.F., Salazar,M.G., Learn,G.H., Fouda,G.G.,
	    Kang,H.H., Mahlokozera,T., Wilks,A.B., Lovingood,R.V., Stacey,A.,
	    Kalilani,L., Meshnick,S.R., Borrow,P., Montefiori,D.C., Denny,T.N.,
	    Letvin,N.L., Shaw,G.M., Hahn,B.H. and Permar,S.R.
  CONSRTM   Center for HIV/AIDS Vaccine Immunology A0167854
  TITLE     Origin and Evolution of HIV-1 in Breast Milk Determined by
	    Single-Genome Amplification and Sequencing
  JOURNAL   J. Virol. 85 (6), 2751-2763 (2011)
  PUBMED    21191008
REFERENCE   2 (bases 1 to 2580)
            Show all sequences for reference 2
  AUTHORS   Salazar-Gonzalez,J.F.
  CONSRTM   Center for HIV/AIDS Vaccine Immunology A0167854
  TITLE     Direct Submission
  JOURNAL   Submitted (08-APR-2010) Department of Medicine, Kaul 806,
	    University of Alabama at Birmingham, 720 20th Street South,
	    Birmingham, AL 35294, USA
COMMENT     Annotation information was provided by the author. Some of the
	    information does not have GenBank feature identifiers and is being
	    provided in the comment section. Information in this section is
	    searchable in HIV Database at Los Alamos (www.hiv.lanl.gov).;
	    ##HIVDataBaseData-START## Patient code 715900301 Sequence Name
	    0301_A8 Subtype C Patient cohort CHAVI 009 Patient sex F Viral Load
	    159,000 Sample city Blantyre Sample date 04.24.08 Sample tissue
	    plasma Culture method uncultured Amplification strategy single
	    genome amplification DBID 2436957246 ##HIVDataBaseData-END##
FEATURES             Location/Qualifiers
     source	     1..2580
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="0301_A8"
		     /isolation_source="HIV-infected lactating woman at 4 weeks
		     post-childbirth"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="Malawi"
		     /collection_date="24-Apr-2008"
		     /note="subtype: C"
     gene	     1..2580
		     /gene="env"
     CDS	     1..2580
		     /gene="env"
		     /codon_start="1"
		     /transl_table="1"
		     /product="envelope glycoprotein"
		     /protein_id="ADZ46425.1"
		     /db_xref="GI:325965663"
		     /translation="MRVREMMRNWQQWWIWGILGFWMLMMCSVLGNRWVTVYYGVPVW
		     KEAKATLFCASDAKAYETEVHNVWATHACVPTDPNPQEMVLENVTESFNMWKNDMVDQ
		     MHEDIISLWDQSLKPCVKLTPLCVTLDCRDVKVSSNVTRDNDTTSGSNSTEDVGMKNC
		     SFNATTELKDKQQKVHALFYKLDIVSLNNSNNNSMYRLIKCNTSTITQACPKVSFEPI
		     PIHYCAPAGYAILKCNNKTFNGTGPCHNVSTVQCTHGIKPVISTQLLLNGSLAEEEIV
		     IRSENITNNAKIIIVHLNESVEIVCTRPNNNTRKRVRIGIGPGQTFYATGAIIGNIRQ
		     AHCNISADKWNKTLQQVRRKLAEYFPNKTITFNSSSGGDLEITTHSFNCRGEFFYCNT
		     SRLFNGTFNETYNGNYSGNGTITILCRIKQIINMWQEVGKAMYAPPIAGNITCKSNIT
		     GLLLTRDGGQGPDKDNTTEIFRPGGGDMRDNWRSELYKYKVVEIKPLGIAPTTAKRRV
		     VEREKRAVGIGAVFLGFLGAAGSTMGAASITLTVQARQLLFGIVQQQSNLLRAIEAQQ
		     HMLQLTVWGIKQLQTRVLAIERYLKDQQLLGLWGCSGKLICTTAVAWNSSWSNKSLPD
		     IWDNMTWMQWDREISNYTNTIYQLLEDSQSQQEKNEKELLELDKWNNLWNWFDITRWL
		     WYIKIFIMIVGGLIGLRIIFAVISVANRVRQGYSPLSFQTLIPNPRGPDRLEGIDEEG
		     GEQDRDRSIRLVSGFFSLAWDDLRSLCLFSYHHLRDFILIVTRAVQLGLQRGWEVLKY
		     LGSLVQYWSQELKKSAISLLDTIAIIVAEGTDRIIEVLQRICRAVLNIPRRIRQGLEA
		     ALL"
     gene	     <1..83
		     /gene="vpu"
     CDS	     <1..83
		     /gene="vpu"
		     /codon_start="3"
		     /transl_table="1"
		     /product="vpu protein"
		     /protein_id="ADZ46424.1"
		     /db_xref="GI:325965662"
		     /translation="ESEGDDEELATMVDMGNLRLLDVNDV"
     gene	     <2164..2390
		     /gene="rev"
     CDS	     <2164..2390
		     /gene="rev"
		     /codon_start="3"
		     /transl_table="1"
		     /product="rev protein"
		     /protein_id="ADZ46423.1"
		     /db_xref="GI:325965661"
		     /translation="PYPKPEGTRQARRNRRRRWRARQRQIHSISERILLTCLGRPAEP
		     VPFQLPPLERLHIDCDESGATGTAEGVGSP"
     gene	     <2164..2254
		     /gene="tat"
     CDS	     <2164..2254
		     /gene="tat"
		     /codon_start="2"
		     /transl_table="1"
		     /product="tat protein"
		     /protein_id="ADZ46422.1"
		     /db_xref="GI:325965660"
		     /translation="PLSQTRGDPTGSKESTKKVESKTETDPFD"
BASE COUNT	915 a	 439 c	  609 g    617 t
ORIGIN
       1 atgagagtga gggagatgat gaggaattgg caacaatggt ggatatgggg aatcttaggc 
      61 ttttggatgt taatgatgtg tagtgtgttg gggaacaggt gggtcacagt ctattatggg 
     121 gtacctgtgt ggaaagaagc aaaagctact ctattctgtg catcagatgc taaagcatat 
     181 gagacagaag tacataatgt ctgggctaca catgcctgtg tacccacaga ccccaaccca 
     241 caagaaatgg ttttggaaaa tgtaacagaa agttttaaca tgtggaaaaa tgacatggta 
     301 gatcagatgc atgaggatat aatcagttta tgggatcaaa gcctaaaacc atgtgtaaag 
     361 ctaaccccac tctgtgtcac tttagattgt agagatgtta aggtttccag caatgttacc 
     421 agggataatg atactaccag tggtagtaat tctacagagg atgtaggaat gaaaaattgc 
     481 tctttcaatg caaccacaga actaaaagat aagcaacaga aggtgcatgc acttttttat 
     541 aaacttgata tagtatcact taataacagt aataacaaca gtatgtatag attaataaaa 
     601 tgcaatacct caaccataac acaagcctgt ccaaaggtct cttttgaacc aattcctata 
     661 cattattgtg cgccagctgg ttatgcgatt ctaaagtgta ataataagac attcaatggg 
     721 acaggaccat gtcataatgt cagcacagta caatgtacac atggaattaa gccagtgata 
     781 tcaactcaac tactgttaaa tggtagccta gcagaagaag agatagtaat tagatctgaa 
     841 aatataacaa acaatgccaa aataataata gtacacctta atgaatcggt ggaaattgtg 
     901 tgtacaagac ccaacaataa tacaaggaaa agggtaagga taggaatagg accaggacaa 
     961 acattctatg caacaggtgc cataataggg aacataagac aagcacattg taacattagt 
    1021 gcagataaat ggaacaaaac tttacaacag gtaagaagaa aattagcaga atacttccct 
    1081 aataaaacaa taacgtttaa ctcatcctca ggaggggatc tagaaattac aacccatagc 
    1141 tttaattgta gaggagaatt tttctattgc aatacatcaa gactatttaa tggaacattt 
    1201 aatgaaacat acaatgggaa ttacagtggg aatggtacca tcaccatact atgcagaata 
    1261 aaacaaatta taaatatgtg gcaggaggta ggaaaggcaa tgtatgcccc tcccattgca 
    1321 ggaaacataa catgtaaatc aaatatcaca ggactactac tgacacgtga tggaggacaa 
    1381 ggaccagata aagataacac aacagagata ttcagacctg gaggaggaga catgagggac 
    1441 aattggagaa gtgaattata taaatataaa gtagtagaaa ttaagccatt gggaatagca 
    1501 cccactacgg caaaaagaag agtggtggag agagaaaaaa gagcagtggg aataggagct 
    1561 gtgttccttg ggttcttggg agcagcagga agcactatgg gcgcagcgtc aataacgctg 
    1621 acggtacagg ccagacaact gttgtttggt atagtgcaac agcaaagcaa tttgctgaga 
    1681 gccatagagg cgcaacagca tatgttgcaa ctcacagtct ggggcattaa gcagctccag 
    1741 acgagagtcc tggccataga aagataccta aaggatcaac agctcctagg gctgtggggc 
    1801 tgctctggaa aactcatctg caccactgct gtggcctgga actccagttg gagtaataaa 
    1861 tcattaccag atatttggga taacatgacc tggatgcagt gggatagaga aattagtaat 
    1921 tacacaaaca caatatacca gttattagaa gactcgcaaa gccagcagga gaaaaatgaa 
    1981 aaggaattgt tagaattgga caagtggaac aatctgtgga attggtttga cataacaagg 
    2041 tggctgtggt atataaaaat attcataatg atagtaggag gcttgatagg tttaagaata 
    2101 atttttgctg tgatctctgt agcgaataga gttaggcagg gctactcacc tttgtctttt 
    2161 cagaccctta tcccaaaccc gaggggaccc gacaggctcg aaggaatcga cgaagaaggt 
    2221 ggagagcaag acagagacag atccattcga ttagtgagcg gattcttctc acttgcctgg 
    2281 gacgacctgc ggagcctgtg ccttttcagc taccaccact tgagagactt catattgatt 
    2341 gtgacgagag cggtgcaact gggactgcag agggggtggg aagtccttaa gtatctggga 
    2401 agtcttgtgc agtattggag ccaggaacta aaaaagagtg ctattagtct gcttgatacc 
    2461 atagcaataa tagtagctga gggaacagat aggattatag aagtactaca aagaatctgt 
    2521 agagctgtcc tcaacatacc tagaagaata agacagggcc ttgaagcagc tttgctataa 
//
last modified: Tue May 31 10:56 2022


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