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LOCUS HM070452 2580 bp RNA linear VRL 16-MAR-2011
DEFINITION HIV-1 isolate 0301_A8 from Malawi envelope glycoprotein (env) gene,
complete cds; and vpu protein (vpu), rev protein (rev), and tat
protein (tat) genes, partial cds
ACCESSION HM070452
VERSION HM070452.1 GI:325965659
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 2580)
Show all sequences for reference 1
AUTHORS Salazar-Gonzalez,J.F., Salazar,M.G., Learn,G.H., Fouda,G.G.,
Kang,H.H., Mahlokozera,T., Wilks,A.B., Lovingood,R.V., Stacey,A.,
Kalilani,L., Meshnick,S.R., Borrow,P., Montefiori,D.C., Denny,T.N.,
Letvin,N.L., Shaw,G.M., Hahn,B.H. and Permar,S.R.
CONSRTM Center for HIV/AIDS Vaccine Immunology A0167854
TITLE Origin and Evolution of HIV-1 in Breast Milk Determined by
Single-Genome Amplification and Sequencing
JOURNAL J. Virol. 85 (6), 2751-2763 (2011)
PUBMED 21191008
REFERENCE 2 (bases 1 to 2580)
Show all sequences for reference 2
AUTHORS Salazar-Gonzalez,J.F.
CONSRTM Center for HIV/AIDS Vaccine Immunology A0167854
TITLE Direct Submission
JOURNAL Submitted (08-APR-2010) Department of Medicine, Kaul 806,
University of Alabama at Birmingham, 720 20th Street South,
Birmingham, AL 35294, USA
COMMENT Annotation information was provided by the author. Some of the
information does not have GenBank feature identifiers and is being
provided in the comment section. Information in this section is
searchable in HIV Database at Los Alamos (www.hiv.lanl.gov).;
##HIVDataBaseData-START## Patient code 715900301 Sequence Name
0301_A8 Subtype C Patient cohort CHAVI 009 Patient sex F Viral Load
159,000 Sample city Blantyre Sample date 04.24.08 Sample tissue
plasma Culture method uncultured Amplification strategy single
genome amplification DBID 2436957246 ##HIVDataBaseData-END##
FEATURES Location/Qualifiers
source 1..2580
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="0301_A8"
/isolation_source="HIV-infected lactating woman at 4 weeks
post-childbirth"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="Malawi"
/collection_date="24-Apr-2008"
/note="subtype: C"
gene 1..2580
/gene="env"
CDS 1..2580
/gene="env"
/codon_start="1"
/transl_table="1"
/product="envelope glycoprotein"
/protein_id="ADZ46425.1"
/db_xref="GI:325965663"
/translation="MRVREMMRNWQQWWIWGILGFWMLMMCSVLGNRWVTVYYGVPVW
KEAKATLFCASDAKAYETEVHNVWATHACVPTDPNPQEMVLENVTESFNMWKNDMVDQ
MHEDIISLWDQSLKPCVKLTPLCVTLDCRDVKVSSNVTRDNDTTSGSNSTEDVGMKNC
SFNATTELKDKQQKVHALFYKLDIVSLNNSNNNSMYRLIKCNTSTITQACPKVSFEPI
PIHYCAPAGYAILKCNNKTFNGTGPCHNVSTVQCTHGIKPVISTQLLLNGSLAEEEIV
IRSENITNNAKIIIVHLNESVEIVCTRPNNNTRKRVRIGIGPGQTFYATGAIIGNIRQ
AHCNISADKWNKTLQQVRRKLAEYFPNKTITFNSSSGGDLEITTHSFNCRGEFFYCNT
SRLFNGTFNETYNGNYSGNGTITILCRIKQIINMWQEVGKAMYAPPIAGNITCKSNIT
GLLLTRDGGQGPDKDNTTEIFRPGGGDMRDNWRSELYKYKVVEIKPLGIAPTTAKRRV
VEREKRAVGIGAVFLGFLGAAGSTMGAASITLTVQARQLLFGIVQQQSNLLRAIEAQQ
HMLQLTVWGIKQLQTRVLAIERYLKDQQLLGLWGCSGKLICTTAVAWNSSWSNKSLPD
IWDNMTWMQWDREISNYTNTIYQLLEDSQSQQEKNEKELLELDKWNNLWNWFDITRWL
WYIKIFIMIVGGLIGLRIIFAVISVANRVRQGYSPLSFQTLIPNPRGPDRLEGIDEEG
GEQDRDRSIRLVSGFFSLAWDDLRSLCLFSYHHLRDFILIVTRAVQLGLQRGWEVLKY
LGSLVQYWSQELKKSAISLLDTIAIIVAEGTDRIIEVLQRICRAVLNIPRRIRQGLEA
ALL"
gene <1..83
/gene="vpu"
CDS <1..83
/gene="vpu"
/codon_start="3"
/transl_table="1"
/product="vpu protein"
/protein_id="ADZ46424.1"
/db_xref="GI:325965662"
/translation="ESEGDDEELATMVDMGNLRLLDVNDV"
gene <2164..2390
/gene="rev"
CDS <2164..2390
/gene="rev"
/codon_start="3"
/transl_table="1"
/product="rev protein"
/protein_id="ADZ46423.1"
/db_xref="GI:325965661"
/translation="PYPKPEGTRQARRNRRRRWRARQRQIHSISERILLTCLGRPAEP
VPFQLPPLERLHIDCDESGATGTAEGVGSP"
gene <2164..2254
/gene="tat"
CDS <2164..2254
/gene="tat"
/codon_start="2"
/transl_table="1"
/product="tat protein"
/protein_id="ADZ46422.1"
/db_xref="GI:325965660"
/translation="PLSQTRGDPTGSKESTKKVESKTETDPFD"
BASE COUNT 915 a 439 c 609 g 617 t
ORIGIN
1 atgagagtga gggagatgat gaggaattgg caacaatggt ggatatgggg aatcttaggc
61 ttttggatgt taatgatgtg tagtgtgttg gggaacaggt gggtcacagt ctattatggg
121 gtacctgtgt ggaaagaagc aaaagctact ctattctgtg catcagatgc taaagcatat
181 gagacagaag tacataatgt ctgggctaca catgcctgtg tacccacaga ccccaaccca
241 caagaaatgg ttttggaaaa tgtaacagaa agttttaaca tgtggaaaaa tgacatggta
301 gatcagatgc atgaggatat aatcagttta tgggatcaaa gcctaaaacc atgtgtaaag
361 ctaaccccac tctgtgtcac tttagattgt agagatgtta aggtttccag caatgttacc
421 agggataatg atactaccag tggtagtaat tctacagagg atgtaggaat gaaaaattgc
481 tctttcaatg caaccacaga actaaaagat aagcaacaga aggtgcatgc acttttttat
541 aaacttgata tagtatcact taataacagt aataacaaca gtatgtatag attaataaaa
601 tgcaatacct caaccataac acaagcctgt ccaaaggtct cttttgaacc aattcctata
661 cattattgtg cgccagctgg ttatgcgatt ctaaagtgta ataataagac attcaatggg
721 acaggaccat gtcataatgt cagcacagta caatgtacac atggaattaa gccagtgata
781 tcaactcaac tactgttaaa tggtagccta gcagaagaag agatagtaat tagatctgaa
841 aatataacaa acaatgccaa aataataata gtacacctta atgaatcggt ggaaattgtg
901 tgtacaagac ccaacaataa tacaaggaaa agggtaagga taggaatagg accaggacaa
961 acattctatg caacaggtgc cataataggg aacataagac aagcacattg taacattagt
1021 gcagataaat ggaacaaaac tttacaacag gtaagaagaa aattagcaga atacttccct
1081 aataaaacaa taacgtttaa ctcatcctca ggaggggatc tagaaattac aacccatagc
1141 tttaattgta gaggagaatt tttctattgc aatacatcaa gactatttaa tggaacattt
1201 aatgaaacat acaatgggaa ttacagtggg aatggtacca tcaccatact atgcagaata
1261 aaacaaatta taaatatgtg gcaggaggta ggaaaggcaa tgtatgcccc tcccattgca
1321 ggaaacataa catgtaaatc aaatatcaca ggactactac tgacacgtga tggaggacaa
1381 ggaccagata aagataacac aacagagata ttcagacctg gaggaggaga catgagggac
1441 aattggagaa gtgaattata taaatataaa gtagtagaaa ttaagccatt gggaatagca
1501 cccactacgg caaaaagaag agtggtggag agagaaaaaa gagcagtggg aataggagct
1561 gtgttccttg ggttcttggg agcagcagga agcactatgg gcgcagcgtc aataacgctg
1621 acggtacagg ccagacaact gttgtttggt atagtgcaac agcaaagcaa tttgctgaga
1681 gccatagagg cgcaacagca tatgttgcaa ctcacagtct ggggcattaa gcagctccag
1741 acgagagtcc tggccataga aagataccta aaggatcaac agctcctagg gctgtggggc
1801 tgctctggaa aactcatctg caccactgct gtggcctgga actccagttg gagtaataaa
1861 tcattaccag atatttggga taacatgacc tggatgcagt gggatagaga aattagtaat
1921 tacacaaaca caatatacca gttattagaa gactcgcaaa gccagcagga gaaaaatgaa
1981 aaggaattgt tagaattgga caagtggaac aatctgtgga attggtttga cataacaagg
2041 tggctgtggt atataaaaat attcataatg atagtaggag gcttgatagg tttaagaata
2101 atttttgctg tgatctctgt agcgaataga gttaggcagg gctactcacc tttgtctttt
2161 cagaccctta tcccaaaccc gaggggaccc gacaggctcg aaggaatcga cgaagaaggt
2221 ggagagcaag acagagacag atccattcga ttagtgagcg gattcttctc acttgcctgg
2281 gacgacctgc ggagcctgtg ccttttcagc taccaccact tgagagactt catattgatt
2341 gtgacgagag cggtgcaact gggactgcag agggggtggg aagtccttaa gtatctggga
2401 agtcttgtgc agtattggag ccaggaacta aaaaagagtg ctattagtct gcttgatacc
2461 atagcaataa tagtagctga gggaacagat aggattatag aagtactaca aagaatctgt
2521 agagctgtcc tcaacatacc tagaagaata agacagggcc ttgaagcagc tttgctataa
//
last modified: Tue May 31 10:56 2022