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LOCUS HM056621 1632 bp RNA linear VRL 09-APR-2011
DEFINITION HIV-1 isolate 520793I from USA pol protein (pol) gene, partial cds
ACCESSION HM056621
VERSION HM056621.1 GI:327458358
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1632)
Show all sequences for reference 1
AUTHORS Brehm,J.H., Lalama,C.M., Hughes,M.D., Haubrich,R., Riddler,S.A.,
Sluis-Cremer,N. and Mellors,J.W.
CONSRTM AIDS Clinical Trials Group Study A5142 Protocol Team
TITLE Failure of initial therapy with two nucleosides and efavirenz is
not associated with early emergence of mutations in the C-terminus
of HIV-1 reverse transcriptase
JOURNAL J. Acquir. Immune Defic. Syndr. 56 (4), 344-348 (2011)
PUBMED 21350368
REFERENCE 2 (bases 1 to 1632)
Show all sequences for reference 2
AUTHORS Brehm,J.H., Lalama,C.M., Hughes,M.D., Haubrich,R., Riddler,S.A.,
Sluis-Cremer,N. and Mellors,J.W.
CONSRTM AIDS Clinical Trials Group Study A5142 Protocol Team
TITLE Direct Submission
JOURNAL Submitted (05-APR-2010) Division of Infectious Diseases, University
of Pittsburgh Department of Medicine, S818 Scaife Hall, 3550
Terrace St., Pittsburgh, PA 15261, USA
FEATURES Location/Qualifiers
source 1..1632
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="520793I"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="USA"
/collection_date="24-Feb-2003"
/note="subtype: CRF_AE"
gene <1..>1632
/gene="pol"
CDS <1..>1632
/gene="pol"
/note="contains reverse transcriptase"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="AEA76619.1"
/db_xref="GI:327458359"
/translation="DGPKVKQWPLTEEKIKALXEICKEMEEEGKISKIGPENPYNTPV
FAIKKKDSTKWRKLXDFRELNKRTQDFWEVQLGIPHPAGLKQKKSVTVLDVGDAYFSV
PLDESFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQCSMTKILEPFRIKNP
ELVLYQYMDDLYVGSDLEIGQHRXKIEELRAHLLSWGFTTPDKKHQKEPPFLWMGYEL
HPDRWTVQPIELPDKDSWTVNDIQKLVGKLNWASQIYAGIKVKQLCXLLRGAKALTDI
VPLTEEAELELAENREILRTPVHGVYYDPSKDLVAEVQKQGQDQWTYQIYQEPFKNLK
TGKYARKRSAHTNDVRQLTEVVQKIATESIVIWGKTPKFRLPIQRETWETWWMEYWQA
TWIPEWEFVNTPPLVKLWYQLEKDPIVGAETFYVDGAASRETKLGKAGYVTDRGRQKV
VSLTETTNQKTELHAIHLALQDSGSEVNIVTDSQYALGIIQAQPDRSESEVVNQIIEE
LIKKEKVYLSWVPAHKGIGGNEQVDKLVSSGIRKVL"
BASE COUNT 642 a 272 c 358 g 348 t 12 other
ORIGIN
1 gatggaccaa aggttaaaca gtggccattg acagaagaaa aaataaaagc attaayagaa
61 atttgtaaag agatggaaga ggaaggaaaa atctcaaaaa ttggacctga aaatccatac
121 aatactccag tatttgctat aaagaaaaag gacagyacma aatggagaaa attaktagac
181 ttcagagagc tcaataaaag aactcaggac ttttgggaag ttcaattagg aataccgcat
241 ccagcaggtt taaaacagaa aaaatcagta acagtactag atgtgggaga tgcatatttt
301 tcagttcctt tagatgaaag ctttagaaag tatactgcat tcaccatacc tagtataaac
361 aatgaracac caggaatcag atatcagtac aatgtgctgc cwcagggatg gaaaggatca
421 ccggcaatat tccagtgtag catgacgaaa atcttagagc cctttagaat aaaaaatcca
481 gaactggttc tctatcaata catggatgac ttgtatgtag gatctgattt agaaataggg
541 cagcacagaa yaaaaataga ggagctraga gctcatctat tgagctgggg atttactaca
601 ccagacaaaa agcatcagaa ggaacctcca ttcctgtgga tgggatatga actccatcct
661 gacagatgga cagtccagcc tatagaattg ccagacaaag acagctggac tgtcaatgat
721 atacagaaat tagtgggaaa actaaattgg gcaagccaaa tttatgcagg gattaaggta
781 aagcaactgt gtaractcct caggggagct aaagcactaa cagacatagt accactgact
841 gaagaagcag aattagaatt ggcagagaac agggaaattc taagaacccc tgtgcatgga
901 gtatattatg acccatcaaa agacttagta gcagaagtac agaaacaagg gcaggaccaa
961 tggacatatc aaatttatca agagccattt aaaaatctaa aaacaggaaa rtatgccaga
1021 aaaaggtctg ctcacactaa tgatgtaaga caattaacag aagtggtgca aaaaatagcc
1081 acagaaagca tagtaatatg gggaaagacc cctaaattta gactacccat acaaagagaa
1141 acatgggaaa catggtggat ggagtattgg caggctacct ggattcctga atgggagttt
1201 gttaataccc ctcctctagt aaaattatgg taccaattag aaaaagaccc catagtagga
1261 gcagagactt tctatgtaga tggggcagct agtagggaga ctaagctagg aaaagcaggr
1321 tatgtcactg acagaggaag acaaaaggta gtttccctaa ctgagacaac aaatcaaaag
1381 actgaattac atgcgatcca tttagccttg caggattcag gatcagaagt aaatatagta
1441 acagactcac aatatgcatt aggaatcatt caggcacaac cagacagrag tgaatcagaa
1501 gtagtcaatc aaataataga ggagctaata aaaaaggaaa aggtctacct gtcatgggta
1561 ccagcacaca aagggattgg aggaaatgaa caagtagata aattagtcag ttcaggaatc
1621 agaaaggtgc ta
//
last modified: Tue May 31 10:56 2022