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LOCUS	    HM056621		    1632 bp    RNA     linear	VRL 09-APR-2011
DEFINITION  HIV-1 isolate 520793I from USA pol protein (pol) gene, partial cds
ACCESSION   HM056621
VERSION     HM056621.1 GI:327458358
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1632)
            Show all sequences for reference 1
  AUTHORS   Brehm,J.H., Lalama,C.M., Hughes,M.D., Haubrich,R., Riddler,S.A.,
	    Sluis-Cremer,N. and Mellors,J.W.
  CONSRTM   AIDS Clinical Trials Group Study A5142 Protocol Team
  TITLE     Failure of initial therapy with two nucleosides and efavirenz is
	    not associated with early emergence of mutations in the C-terminus
	    of HIV-1 reverse transcriptase
  JOURNAL   J. Acquir. Immune Defic. Syndr. 56 (4), 344-348 (2011)
  PUBMED    21350368
REFERENCE   2 (bases 1 to 1632)
            Show all sequences for reference 2
  AUTHORS   Brehm,J.H., Lalama,C.M., Hughes,M.D., Haubrich,R., Riddler,S.A.,
	    Sluis-Cremer,N. and Mellors,J.W.
  CONSRTM   AIDS Clinical Trials Group Study A5142 Protocol Team
  TITLE     Direct Submission
  JOURNAL   Submitted (05-APR-2010) Division of Infectious Diseases, University
	    of Pittsburgh Department of Medicine, S818 Scaife Hall, 3550
	    Terrace St., Pittsburgh, PA 15261, USA
FEATURES             Location/Qualifiers
     source	     1..1632
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="520793I"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="USA"
		     /collection_date="24-Feb-2003"
		     /note="subtype: CRF_AE"
     gene	     <1..>1632
		     /gene="pol"
     CDS	     <1..>1632
		     /gene="pol"
		     /note="contains reverse transcriptase"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="AEA76619.1"
		     /db_xref="GI:327458359"
		     /translation="DGPKVKQWPLTEEKIKALXEICKEMEEEGKISKIGPENPYNTPV
		     FAIKKKDSTKWRKLXDFRELNKRTQDFWEVQLGIPHPAGLKQKKSVTVLDVGDAYFSV
		     PLDESFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQCSMTKILEPFRIKNP
		     ELVLYQYMDDLYVGSDLEIGQHRXKIEELRAHLLSWGFTTPDKKHQKEPPFLWMGYEL
		     HPDRWTVQPIELPDKDSWTVNDIQKLVGKLNWASQIYAGIKVKQLCXLLRGAKALTDI
		     VPLTEEAELELAENREILRTPVHGVYYDPSKDLVAEVQKQGQDQWTYQIYQEPFKNLK
		     TGKYARKRSAHTNDVRQLTEVVQKIATESIVIWGKTPKFRLPIQRETWETWWMEYWQA
		     TWIPEWEFVNTPPLVKLWYQLEKDPIVGAETFYVDGAASRETKLGKAGYVTDRGRQKV
		     VSLTETTNQKTELHAIHLALQDSGSEVNIVTDSQYALGIIQAQPDRSESEVVNQIIEE
		     LIKKEKVYLSWVPAHKGIGGNEQVDKLVSSGIRKVL"
BASE COUNT	642 a	 272 c	  358 g    348 t     12 other
ORIGIN
       1 gatggaccaa aggttaaaca gtggccattg acagaagaaa aaataaaagc attaayagaa 
      61 atttgtaaag agatggaaga ggaaggaaaa atctcaaaaa ttggacctga aaatccatac 
     121 aatactccag tatttgctat aaagaaaaag gacagyacma aatggagaaa attaktagac 
     181 ttcagagagc tcaataaaag aactcaggac ttttgggaag ttcaattagg aataccgcat 
     241 ccagcaggtt taaaacagaa aaaatcagta acagtactag atgtgggaga tgcatatttt 
     301 tcagttcctt tagatgaaag ctttagaaag tatactgcat tcaccatacc tagtataaac 
     361 aatgaracac caggaatcag atatcagtac aatgtgctgc cwcagggatg gaaaggatca 
     421 ccggcaatat tccagtgtag catgacgaaa atcttagagc cctttagaat aaaaaatcca 
     481 gaactggttc tctatcaata catggatgac ttgtatgtag gatctgattt agaaataggg 
     541 cagcacagaa yaaaaataga ggagctraga gctcatctat tgagctgggg atttactaca 
     601 ccagacaaaa agcatcagaa ggaacctcca ttcctgtgga tgggatatga actccatcct 
     661 gacagatgga cagtccagcc tatagaattg ccagacaaag acagctggac tgtcaatgat 
     721 atacagaaat tagtgggaaa actaaattgg gcaagccaaa tttatgcagg gattaaggta 
     781 aagcaactgt gtaractcct caggggagct aaagcactaa cagacatagt accactgact 
     841 gaagaagcag aattagaatt ggcagagaac agggaaattc taagaacccc tgtgcatgga 
     901 gtatattatg acccatcaaa agacttagta gcagaagtac agaaacaagg gcaggaccaa 
     961 tggacatatc aaatttatca agagccattt aaaaatctaa aaacaggaaa rtatgccaga 
    1021 aaaaggtctg ctcacactaa tgatgtaaga caattaacag aagtggtgca aaaaatagcc 
    1081 acagaaagca tagtaatatg gggaaagacc cctaaattta gactacccat acaaagagaa 
    1141 acatgggaaa catggtggat ggagtattgg caggctacct ggattcctga atgggagttt 
    1201 gttaataccc ctcctctagt aaaattatgg taccaattag aaaaagaccc catagtagga 
    1261 gcagagactt tctatgtaga tggggcagct agtagggaga ctaagctagg aaaagcaggr 
    1321 tatgtcactg acagaggaag acaaaaggta gtttccctaa ctgagacaac aaatcaaaag 
    1381 actgaattac atgcgatcca tttagccttg caggattcag gatcagaagt aaatatagta 
    1441 acagactcac aatatgcatt aggaatcatt caggcacaac cagacagrag tgaatcagaa 
    1501 gtagtcaatc aaataataga ggagctaata aaaaaggaaa aggtctacct gtcatgggta 
    1561 ccagcacaca aagggattgg aggaaatgaa caagtagata aattagtcag ttcaggaatc 
    1621 agaaaggtgc ta
//
last modified: Tue May 31 10:56 2022


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