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LOCUS HM056602 1680 bp RNA linear VRL 09-APR-2011
DEFINITION HIV-1 isolate 373772A from USA pol protein (pol) gene, partial cds
ACCESSION HM056602
VERSION HM056602.1 GI:327458320
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1680)
Show all sequences for reference 1
AUTHORS Brehm,J.H., Lalama,C.M., Hughes,M.D., Haubrich,R., Riddler,S.A.,
Sluis-Cremer,N. and Mellors,J.W.
CONSRTM AIDS Clinical Trials Group Study A5142 Protocol Team
TITLE Failure of initial therapy with two nucleosides and efavirenz is
not associated with early emergence of mutations in the C-terminus
of HIV-1 reverse transcriptase
JOURNAL J. Acquir. Immune Defic. Syndr. 56 (4), 344-348 (2011)
PUBMED 21350368
REFERENCE 2 (bases 1 to 1680)
Show all sequences for reference 2
AUTHORS Brehm,J.H., Lalama,C.M., Hughes,M.D., Haubrich,R., Riddler,S.A.,
Sluis-Cremer,N. and Mellors,J.W.
CONSRTM AIDS Clinical Trials Group Study A5142 Protocol Team
TITLE Direct Submission
JOURNAL Submitted (05-APR-2010) Division of Infectious Diseases, University
of Pittsburgh Department of Medicine, S818 Scaife Hall, 3550
Terrace St., Pittsburgh, PA 15261, USA
FEATURES Location/Qualifiers
source 1..1680
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="373772A"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="USA"
/collection_date="07-Jul-2004"
/note="subtype: B"
gene <1..>1680
/gene="pol"
CDS <1..>1680
/gene="pol"
/note="contains reverse transcriptase"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="AEA76600.1"
/db_xref="GI:327458321"
/translation="PISPIDTVPVKLKPGMDGPKVKQWPLTSEKIKALIEICTEMEKE
GKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKK
KKSVTVLDVGDAYFSVPLDKDFRKYTAFTIPSLNNETPGIRYQYNVLPQGWKGSPAIF
QASMTKILEPFRKQNPDIDIYQYMDDLYVGSDLEIGQHRRKIEELRQHLLRWGFTTPD
KKHQKEPPFLWMGYELHPDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPGIKV
RQLCKLLRGTKALTEVVPLTQEAELELAENREILKEPVHGVYYDPSKDLVAEIQKQGQ
GQWTYQIYQEPFKNLKTGKYARMRGAHTNDIKQLTEAVQKIATESIVIWGKTPKFKLP
IQKETWEAWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIXGAETFYVDGAANRET
KIGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQDSGLEVNIVTDSQYALGIIQA
QPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRXXL"
BASE COUNT 679 a 275 c 358 g 363 t 5 other
ORIGIN
1 cccattagtc ctattgacac tgtaccagta aaattaaagc caggaatgga tggcccaaaa
61 gttaaacaat ggccattaac aagtgaraaa ataaaagcat taatagaaat ctgtacagaa
121 atggaaaagg aagggaaaat ttcaaaaatt gggcctgaaa atccatacaa tactccagta
181 tttgctataa agaaaaaaga cagtactaaa tggagaaaat tagtagattt tagagaactt
241 aataagagaa ctcaagattt ctgggaagtt caattaggca taccacatcc cgcagggtta
301 aaaaagaaaa aatcagtaac agtattggat gtgggtgatg catacttttc agttccctta
361 gataaagact ttaggaagta tactgcattt accataccta gtctaaacaa tgagacacca
421 gggattagat atcagtacaa tgtgttacca cagggatgga aaggatcacc agcaatattc
481 caagctagca tgacaaaaat cttagagcct tttagaaaac aaaatccaga catagatatc
541 tatcaataca tggatgattt atatgtggga tcggatttag aaatagggca gcacagaaga
601 aaaatagagg aactgagaca acatctgttg aggtggggat ttaccacacc agacaaaaaa
661 catcagaaag aacccccatt cctttggatg ggttatgaac tccatcctga taaatggaca
721 gtacagccta tagtgctgcc agaaaaggat agctggactg tcaatgatat acagaagtta
781 gtgggaaaat tgaattgggc aagtcagatt tatccaggga ttaaagtaag gcaattatgt
841 aaactcctta ggggaaccaa agcactaaca gaagtggtac ccctaacaca agaagcagag
901 ctagaactgg cagaaaacag ggaaattcta aaagaaccag tacatggagt atattatgac
961 ccatcaaaag acttagtagc agaaatacag aagcaggggc aaggacaatg gacatatcaa
1021 atttatcaag agccatttaa aaatctgaaa acaggaaagt atgcaagaat gaggggtgcc
1081 cacacaaatg atataaaaca attaacagag gcagtgcaaa aaatagccac agaaagcata
1141 gtaatatggg gaaagactcc taaatttaaa ctacccatac agaaagaaac atgggaagca
1201 tggtggacag agtattggca agccacatgg attcctgagt gggagtttgt caacacccct
1261 cccttagtaa aattatggta ccagttagag aaagaaccca tagwaggagc agaaactttc
1321 tatgtagatg gagcagctaa tagggagact aaaataggaa aagcaggata tgttactgac
1381 agaggaagac araaggttgt tcccttaact gacacaacaa atcagaagac tgagttacaa
1441 gcaattcatc tagctttgca ggactcagga ttagaagtaa acatagtaac agactcacaa
1501 tatgcactag gaattattca agcacaacca gataagagtg aatcagagtt agtcagtcaa
1561 ataatagaac agttaataaa aaaggaaaag gtctacctag catgggtacc agcacacaaa
1621 ggaattgggg gaaatgaaca agtagataaa ttagtcagtg ctggaataag garartacta
//
last modified: Tue May 31 10:56 2022