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LOCUS	    HM056602		    1680 bp    RNA     linear	VRL 09-APR-2011
DEFINITION  HIV-1 isolate 373772A from USA pol protein (pol) gene, partial cds
ACCESSION   HM056602
VERSION     HM056602.1 GI:327458320
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1680)
            Show all sequences for reference 1
  AUTHORS   Brehm,J.H., Lalama,C.M., Hughes,M.D., Haubrich,R., Riddler,S.A.,
	    Sluis-Cremer,N. and Mellors,J.W.
  CONSRTM   AIDS Clinical Trials Group Study A5142 Protocol Team
  TITLE     Failure of initial therapy with two nucleosides and efavirenz is
	    not associated with early emergence of mutations in the C-terminus
	    of HIV-1 reverse transcriptase
  JOURNAL   J. Acquir. Immune Defic. Syndr. 56 (4), 344-348 (2011)
  PUBMED    21350368
REFERENCE   2 (bases 1 to 1680)
            Show all sequences for reference 2
  AUTHORS   Brehm,J.H., Lalama,C.M., Hughes,M.D., Haubrich,R., Riddler,S.A.,
	    Sluis-Cremer,N. and Mellors,J.W.
  CONSRTM   AIDS Clinical Trials Group Study A5142 Protocol Team
  TITLE     Direct Submission
  JOURNAL   Submitted (05-APR-2010) Division of Infectious Diseases, University
	    of Pittsburgh Department of Medicine, S818 Scaife Hall, 3550
	    Terrace St., Pittsburgh, PA 15261, USA
FEATURES             Location/Qualifiers
     source	     1..1680
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="373772A"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="USA"
		     /collection_date="07-Jul-2004"
		     /note="subtype: B"
     gene	     <1..>1680
		     /gene="pol"
     CDS	     <1..>1680
		     /gene="pol"
		     /note="contains reverse transcriptase"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="AEA76600.1"
		     /db_xref="GI:327458321"
		     /translation="PISPIDTVPVKLKPGMDGPKVKQWPLTSEKIKALIEICTEMEKE
		     GKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKK
		     KKSVTVLDVGDAYFSVPLDKDFRKYTAFTIPSLNNETPGIRYQYNVLPQGWKGSPAIF
		     QASMTKILEPFRKQNPDIDIYQYMDDLYVGSDLEIGQHRRKIEELRQHLLRWGFTTPD
		     KKHQKEPPFLWMGYELHPDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPGIKV
		     RQLCKLLRGTKALTEVVPLTQEAELELAENREILKEPVHGVYYDPSKDLVAEIQKQGQ
		     GQWTYQIYQEPFKNLKTGKYARMRGAHTNDIKQLTEAVQKIATESIVIWGKTPKFKLP
		     IQKETWEAWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIXGAETFYVDGAANRET
		     KIGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQDSGLEVNIVTDSQYALGIIQA
		     QPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRXXL"
BASE COUNT	679 a	 275 c	  358 g    363 t      5 other
ORIGIN
       1 cccattagtc ctattgacac tgtaccagta aaattaaagc caggaatgga tggcccaaaa 
      61 gttaaacaat ggccattaac aagtgaraaa ataaaagcat taatagaaat ctgtacagaa 
     121 atggaaaagg aagggaaaat ttcaaaaatt gggcctgaaa atccatacaa tactccagta 
     181 tttgctataa agaaaaaaga cagtactaaa tggagaaaat tagtagattt tagagaactt 
     241 aataagagaa ctcaagattt ctgggaagtt caattaggca taccacatcc cgcagggtta 
     301 aaaaagaaaa aatcagtaac agtattggat gtgggtgatg catacttttc agttccctta 
     361 gataaagact ttaggaagta tactgcattt accataccta gtctaaacaa tgagacacca 
     421 gggattagat atcagtacaa tgtgttacca cagggatgga aaggatcacc agcaatattc 
     481 caagctagca tgacaaaaat cttagagcct tttagaaaac aaaatccaga catagatatc 
     541 tatcaataca tggatgattt atatgtggga tcggatttag aaatagggca gcacagaaga 
     601 aaaatagagg aactgagaca acatctgttg aggtggggat ttaccacacc agacaaaaaa 
     661 catcagaaag aacccccatt cctttggatg ggttatgaac tccatcctga taaatggaca 
     721 gtacagccta tagtgctgcc agaaaaggat agctggactg tcaatgatat acagaagtta 
     781 gtgggaaaat tgaattgggc aagtcagatt tatccaggga ttaaagtaag gcaattatgt 
     841 aaactcctta ggggaaccaa agcactaaca gaagtggtac ccctaacaca agaagcagag 
     901 ctagaactgg cagaaaacag ggaaattcta aaagaaccag tacatggagt atattatgac 
     961 ccatcaaaag acttagtagc agaaatacag aagcaggggc aaggacaatg gacatatcaa 
    1021 atttatcaag agccatttaa aaatctgaaa acaggaaagt atgcaagaat gaggggtgcc 
    1081 cacacaaatg atataaaaca attaacagag gcagtgcaaa aaatagccac agaaagcata 
    1141 gtaatatggg gaaagactcc taaatttaaa ctacccatac agaaagaaac atgggaagca 
    1201 tggtggacag agtattggca agccacatgg attcctgagt gggagtttgt caacacccct 
    1261 cccttagtaa aattatggta ccagttagag aaagaaccca tagwaggagc agaaactttc 
    1321 tatgtagatg gagcagctaa tagggagact aaaataggaa aagcaggata tgttactgac 
    1381 agaggaagac araaggttgt tcccttaact gacacaacaa atcagaagac tgagttacaa 
    1441 gcaattcatc tagctttgca ggactcagga ttagaagtaa acatagtaac agactcacaa 
    1501 tatgcactag gaattattca agcacaacca gataagagtg aatcagagtt agtcagtcaa 
    1561 ataatagaac agttaataaa aaaggaaaag gtctacctag catgggtacc agcacacaaa 
    1621 ggaattgggg gaaatgaaca agtagataaa ttagtcagtg ctggaataag garartacta 
//
last modified: Tue May 31 10:56 2022


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