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LOCUS	    HM056588		    1680 bp    RNA     linear	VRL 09-APR-2011
DEFINITION  HIV-1 isolate 251904H from USA pol protein (pol) gene, partial cds
ACCESSION   HM056588
VERSION     HM056588.1 GI:327458292
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1680)
            Show all sequences for reference 1
  AUTHORS   Brehm,J.H., Lalama,C.M., Hughes,M.D., Haubrich,R., Riddler,S.A.,
	    Sluis-Cremer,N. and Mellors,J.W.
  CONSRTM   AIDS Clinical Trials Group Study A5142 Protocol Team
  TITLE     Failure of initial therapy with two nucleosides and efavirenz is
	    not associated with early emergence of mutations in the C-terminus
	    of HIV-1 reverse transcriptase
  JOURNAL   J. Acquir. Immune Defic. Syndr. 56 (4), 344-348 (2011)
  PUBMED    21350368
REFERENCE   2 (bases 1 to 1680)
            Show all sequences for reference 2
  AUTHORS   Brehm,J.H., Lalama,C.M., Hughes,M.D., Haubrich,R., Riddler,S.A.,
	    Sluis-Cremer,N. and Mellors,J.W.
  CONSRTM   AIDS Clinical Trials Group Study A5142 Protocol Team
  TITLE     Direct Submission
  JOURNAL   Submitted (05-APR-2010) Division of Infectious Diseases, University
	    of Pittsburgh Department of Medicine, S818 Scaife Hall, 3550
	    Terrace St., Pittsburgh, PA 15261, USA
FEATURES             Location/Qualifiers
     source	     1..1680
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="251904H"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="USA"
		     /collection_date="24-Jul-2003"
		     /note="subtype: B"
     gene	     <1..>1680
		     /gene="pol"
     CDS	     <1..>1680
		     /gene="pol"
		     /note="contains reverse transcriptase"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="AEA76586.1"
		     /db_xref="GI:327458293"
		     /translation="PISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALIEICTEMEKE
		     GKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKQ
		     KKSITVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIF
		     QCSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRAKIEELREHLLRWGFTTPD
		     KKHQKEPPFLWMGYELHPDKWTVQPILLPEKDSWTVNDIQKLVGKLNWASQIYAGIKV
		     KQLCRLIKGTKALTEVVPLTEEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGQ
		     GQWTYQIYQEPFKNLKTGKYARTRGAHTNDVKQLTEAVQKIATESIVIWGKTPKFRLP
		     IQKEVWETWWTEYWQATWIPEWEYVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRET
		     KLGKAGYVTDXGXQKVVSXTDTTNQKTELQAIXLALQDSGSEVNIVTDSQYALGIIQA
		     QPDRSESELVSQIIEQLIKKEKVYLSWVPAHKGIGGNEQVDKLVSNGIRKIL"
BASE COUNT	675 a	 277 c	  358 g    357 t     13 other
ORIGIN
       1 cccataagtc ctattgaaac tgtaccagta aaattraagc caggaatgga tggcccaaaa 
      61 gttaaacaat ggccmctgac agaagaaaaa ataaaggcat taatagaaat ttgtacagaa 
     121 atggaaaagg aagggaaaat ttcaaaaatt gggcctgaaa atccatacaa tactccagta 
     181 tttgccataa agaaaaaaga cagtactaaa tggagaaaat tagtagattt cagagaactt 
     241 aataagagaa ctcaagactt ctgggaagtt caattaggaa taccacatcc cgcagggtta 
     301 aaacagaaaa aatcaataac agtactggat gtgggtgatg catatttttc agttccttta 
     361 gatgaagayt tcaggaagta tactgcattc accataccta gtataaacaa tgagacacca 
     421 gggattagat atcagtacaa tgtgcttcca cagggatgga aaggatcacc agcaatattc 
     481 caatgtagca tgacaaaaat cttagagccc tttagaaaac aaaatccaga catagttatc 
     541 tatcaataca tggatgattt gtatgtagga tctgacttag aaatagggca gcatagagca 
     601 aaaatagagg aactgagaga acatctgttg aggtgggggt ttaccacacc agacaaaaar 
     661 catcagaaag aacctccatt cctatggatg gggtatgaac tccatcctga caaatggaca 
     721 gtacagccta tactgctgcc agaaaaggac agctggactg tcaatgacat acagaagtta 
     781 gtgggaaaat tgaattgggc aagtcagatt tatgcaggra ttaaagtaaa gcaattatgt 
     841 agactcatta agggaaccaa agcactaaca gaagtagtac cactaacaga agaagcagag 
     901 ctagaactgg cagaaaatag ggarattcta aaagaaccag tacatggagt gtattatgac 
     961 ccatcaaaag acttaatagc agaaatacag aagcagggac aaggccagtg gacatatcaa 
    1021 atttatcaag agccatttaa aaatctgaaa acaggaaaat atgcaagaac aaggggtgcc 
    1081 cacacaaatg atgtaaaaca attaacagag gcagtgcaaa aaatagccac agaaagcata 
    1141 gtaatatggg gaaagactcc taaatttaga ctacccatac aaaaagaagt atgggaaaca 
    1201 tggtggacag agtattggca agccacctgg attcctgagt gggagtatgt caatacccct 
    1261 cccttagtaa aattatggta ccagttagag aaagaaccca tagtaggagc agaaactttc 
    1321 tatgtagatg grgcagctaa cagggaaaca aaattaggaa aagcaggata tgttactgac 
    1381 araggaarac aaaargttgt ctccytcact gacacaacaa atcagaagac tgagttacaa 
    1441 gcaattmatt tagctttgca ggattcgggg tcagaagtaa acatagtaac agactcwcaa 
    1501 tatgcattag ggatcattca agcacaacca gatagaagtg aatcagagtt agtcagtcaa 
    1561 ataatagagc agttaataaa aaaggaaaag gtctacctgt catgggtgcc agcacacaaa 
    1621 ggaattggag gcaatgaaca agtagacaaa ttagtcagta atggaatcag gaaaatatta 
//
last modified: Tue May 31 10:56 2022


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