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LOCUS HM026312 672 bp RNA linear VRL 08-JUN-2011
DEFINITION HIV-1 isolate 01_AE.KH03-0397RT(N0730250) from Cambodia reverse
transcriptase (pol) gene, partial cds
ACCESSION HM026312
VERSION HM026312.1 GI:297595218
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 672)
Show all sequences for reference 1
AUTHORS Ferradini,L., Ouk,V., Segeral,O., Nouhin,J., Dulioust,A., Hak,C.,
Fournier,I., Lerolle,N., Ngin,S., Mean,C.V., Delfraissy,J.-F. and
Nerrienet,E.
TITLE High efficacy of lopinavir/r-based second-line antiretroviral
treatment after 24 months of follow up at ESTHER/Calmette Hospital
in Phnom Penh, Cambodia.
JOURNAL J Int AIDS Soc. 2011 Mar 26;14:14.
PUBMED 21439074
REFERENCE 2 (bases 1 to 672)
Show all sequences for reference 2
AUTHORS Ferradini,L., Ouk,V., Segeral,O., Nouhin,J., Dulioust,A., Hak,C.,
Fournier,I., Lerolle,N., Ngin,S., Mean,C.V., Delfraissy,J.-F. and
Nerrienet,E.
TITLE Direct Submission
JOURNAL Submitted (22-MAR-2010) HIV/Hepatitis Laboratory, Institut Pasteur
du Cambodge, 5, Monivong Blvd, Phnom Penh BP983, Cambodia
FEATURES Location/Qualifiers
source 1..672
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="01_AE.KH03-0397RT(N0730250)"
/isolation_source="plasma of HIV-1 infected and ARV
treated patient"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="Cambodia"
/collection_date="Mar-2005"
/note="genotype: CRF01_AE"
gene <1..>672
/gene="pol"
CDS <1..>672
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="reverse transcriptase"
/protein_id="ADI48130.1"
/db_xref="GI:297595219"
/translation="MDGPKVKQWPLTAEKIKALTEICTEMEKEGKISKIGPENPYNTP
IFAIKKKNSTRWRKLVDFRELNKRTQDFWEVQLGIPHPXGLEKKKSITXLDVGDAYFS
VPLDESFRKYTAFTIPSINNEKPGIRYQYNVLPQGWKGSPAIFQYSMTKILEPFRIKN
PEMVICQYVDDLYVASDLEIGQHRAKIEELRAHLLSWGFFTPDEKHQKEPPFLWMGYE
LHPDRW"
BASE COUNT 259 a 107 c 144 g 156 t 6 other
ORIGIN
1 atggatggac caaaggttaa acagtggcca ttaacagcag aaaaaataaa agcattaaca
61 gaaatttgta cagagatgga aaaggaagga aaaatctcaa aaattgggcc tgaaaatcca
121 tacaatactc caatatttgc tataaagaaa aagaacagta ccagatggag gaaattagtg
181 gatttcagag agctcaataa aagaactcaa gacttttggg aagttcagct aggaataccg
241 catccagsag gtttagaaaa gaaaaaatca ataacartat tagatgtggg agatgcatat
301 ttttcagttc ctttagatga aagctttaga aagtatactg cattcaccat acctagtata
361 aacaatgaga aaccaggrat cagatatcag tacaatgtgc tgccacaggg atggaaggga
421 tcaccagcaa tattccagta tagcatgaca aaaatcttag agccctttag aataaaaaat
481 ccagagatgg ttatctgtca atacgtggat gacttgtatg tagcatctga tttagaaata
541 gggcagcaca gagcaaaaat agaggagcta agagctcaty tattgagctg ggggtttttt
601 acmccagacg aaaagcatca gaaggaacct ccattcctyt ggatgggata tgaactccat
661 cctgacagat gg
//
last modified: Tue May 31 10:56 2022