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LOCUS	    HM026312		     672 bp    RNA     linear	VRL 08-JUN-2011
DEFINITION  HIV-1 isolate 01_AE.KH03-0397RT(N0730250) from Cambodia reverse
	    transcriptase (pol) gene, partial cds
ACCESSION   HM026312
VERSION     HM026312.1 GI:297595218
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 672)
            Show all sequences for reference 1
  AUTHORS   Ferradini,L., Ouk,V., Segeral,O., Nouhin,J., Dulioust,A., Hak,C.,
	    Fournier,I., Lerolle,N., Ngin,S., Mean,C.V., Delfraissy,J.-F. and
	    Nerrienet,E.
  TITLE     High efficacy of lopinavir/r-based second-line antiretroviral
	    treatment after 24 months of follow up at ESTHER/Calmette Hospital
	    in Phnom Penh, Cambodia.
  JOURNAL   J Int AIDS Soc. 2011 Mar 26;14:14.
  PUBMED    21439074
REFERENCE   2 (bases 1 to 672)
            Show all sequences for reference 2
  AUTHORS   Ferradini,L., Ouk,V., Segeral,O., Nouhin,J., Dulioust,A., Hak,C.,
	    Fournier,I., Lerolle,N., Ngin,S., Mean,C.V., Delfraissy,J.-F. and
	    Nerrienet,E.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAR-2010) HIV/Hepatitis Laboratory, Institut Pasteur
	    du Cambodge, 5, Monivong Blvd, Phnom Penh BP983, Cambodia
FEATURES             Location/Qualifiers
     source	     1..672
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="01_AE.KH03-0397RT(N0730250)"
		     /isolation_source="plasma of HIV-1 infected and ARV
		     treated patient"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="Cambodia"
		     /collection_date="Mar-2005"
		     /note="genotype: CRF01_AE"
     gene	     <1..>672
		     /gene="pol"
     CDS	     <1..>672
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="reverse transcriptase"
		     /protein_id="ADI48130.1"
		     /db_xref="GI:297595219"
		     /translation="MDGPKVKQWPLTAEKIKALTEICTEMEKEGKISKIGPENPYNTP
		     IFAIKKKNSTRWRKLVDFRELNKRTQDFWEVQLGIPHPXGLEKKKSITXLDVGDAYFS
		     VPLDESFRKYTAFTIPSINNEKPGIRYQYNVLPQGWKGSPAIFQYSMTKILEPFRIKN
		     PEMVICQYVDDLYVASDLEIGQHRAKIEELRAHLLSWGFFTPDEKHQKEPPFLWMGYE
		     LHPDRW"
BASE COUNT	259 a	 107 c	  144 g    156 t      6 other
ORIGIN
       1 atggatggac caaaggttaa acagtggcca ttaacagcag aaaaaataaa agcattaaca 
      61 gaaatttgta cagagatgga aaaggaagga aaaatctcaa aaattgggcc tgaaaatcca 
     121 tacaatactc caatatttgc tataaagaaa aagaacagta ccagatggag gaaattagtg 
     181 gatttcagag agctcaataa aagaactcaa gacttttggg aagttcagct aggaataccg 
     241 catccagsag gtttagaaaa gaaaaaatca ataacartat tagatgtggg agatgcatat 
     301 ttttcagttc ctttagatga aagctttaga aagtatactg cattcaccat acctagtata 
     361 aacaatgaga aaccaggrat cagatatcag tacaatgtgc tgccacaggg atggaaggga 
     421 tcaccagcaa tattccagta tagcatgaca aaaatcttag agccctttag aataaaaaat 
     481 ccagagatgg ttatctgtca atacgtggat gacttgtatg tagcatctga tttagaaata 
     541 gggcagcaca gagcaaaaat agaggagcta agagctcaty tattgagctg ggggtttttt 
     601 acmccagacg aaaagcatca gaaggaacct ccattcctyt ggatgggata tgaactccat 
     661 cctgacagat gg
//
last modified: Tue May 31 10:56 2022


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