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LOCUS	    HM014324		    2490 bp    DNA     linear	VRL 01-JUN-2010
DEFINITION  HIV-1 isolate NA20_LN14 from United Kingdom envelope glycoprotein
	    (env) gene, partial cds
ACCESSION   HM014324
VERSION     HM014324.1 GI:296933109
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 2490)
            Show all sequences for reference 1
  AUTHORS   Peters,P.J., Bhattacharya,J., Hibbitts,S., Dittmar,M.T.,
	    Simmons,G., Bell,J., Simmonds,P. and Clapham,P.R.
  TITLE     Biological Analysis of Human Immunodeficiency Virus Type 1 R5
	    Envelopes Amplified from Brain and Lymph Node Tissues of AIDS
	    Patients with Neuropathology Reveals Two Distinct Tropism
	    Phenotypes and Identifies Envelopes in the Brain That Confer an
	    Enhanced Tropism and Fusigenicity for Macrophages
  JOURNAL   J. Virol. 78 (13), 6915-6926 (2004)
  PUBMED    15194768
REFERENCE   2 (bases 1 to 2490)
            Show all sequences for reference 2
  AUTHORS   Peters,P.J., Bhattacharya,J., Hibbitts,S., Dittmar,M.T.,
	    Simmons,G., Bell,J., Simmonds,P. and Clapham,P.R.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-MAR-2010) Program in Molecular Medicine and Dept of
	    Molecular Genetics and Microbiology, University of Massachusetts
	    Medical School, 373 Plantation Street Biotech II Suite 315,
	    Worcester, MA 01605, USA
FEATURES             Location/Qualifiers
     source	     1..2490
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolate="NA20_LN14"
		     /isolation_source="patient NA20"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="United Kingdom"
		     /note="subtype: B"
     gene	     <1..>2490
		     /gene="env"
     CDS	     <1..>2490
		     /gene="env"
		     /note="from kpn1 site upstream of gp120 to end of gp41"
		     /codon_start="1"
		     /transl_table="1"
		     /product="envelope glycoprotein"
		     /protein_id="ADH93670.1"
		     /db_xref="GI:296933110"
		     /translation="PVWKEATTTLFCASDAKAYDTEVHNVWATHACVPTDPNPQEVVL
		     VNVTEDFNMWKNNMVEQMHEDIISLWDQSLKPCVKLTPLCVTLHCTDWRRNATTNATA
		     ITTATPSSRGETLEGGEMKNCSFNITTSIRDKVKKEYALFYSLDVVPIENSNTSYRLI
		     SCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCNDKKFSGKGSCKNVSTVQCTHGIR
		     PVVATQLRLNGSLAEEEVVIRSDNFTDNIKNIIVQLNESVEINCTRPSNNTRKSIHLG
		     PGSALYATGAITGDIRQAHCNISRAKWNNTLGQIVIKLREQVREQFKNKTIETIVFNQ
		     SSGGDPEIVMHSFNCGGEFFYCNTTQLFNSTWNVNSTWNGTEGSNNTEGNDTITLQCR
		     IKQIINMWQEVGKAMYAPPIRGQIRCSSNITGLILTRDGGNDNTTTETFRPGGGNMRD
		     NWRSELYKYKVVKIEPLGVAPTKAKRRVVQREKRAVGIGGAMFLGFLGAAGSTMGAAS
		     LTLTVQARQLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARVLAVERYLQDQQL
		     LGIWGCSGKLICTTTVPWNTSWSNRSQEEIWGNLTWMQWEKEIDNYTSLIYTLIEQSQ
		     NQQEKNEQELLELDKWANLWNWFSITNWLWYIKIFIMIVGGLIGLRIVFAVLSIVNRV
		     RQGYSPLSFQIRPPAPRGPDRPEGIEEEGGERDRDRSGPLVDGFLAIIWVDLRSLCLF
		     SYHRLRDFLLIVTRIVELLGRRGWELLKYWWNLLQYWSQELKNSAISLLNAIAITVAE
		     VTDRVIEVVQRAYRAILHIPTRIRQGLERALL"
BASE COUNT	859 a	 434 c	  593 g    604 t
ORIGIN
       1 cctgtgtgga aagaagccac caccactcta ttttgtgcat cagatgctaa agcatatgat 
      61 acagaggtcc ataatgtttg ggccacacat gcctgtgtac ccacagaccc caacccacaa 
     121 gaagtagtat tggtgaatgt gacagaagat tttaacatgt ggaaaaataa catggtagaa 
     181 cagatgcatg aggatataat tagtttatgg gatcaaagcc taaaaccatg tgtaaaatta 
     241 accccacttt gtgttacttt gcattgcact gattggagga ggaatgccac tactaatgcc 
     301 actgctatca ccactgctac ccctagtagt aggggggaaa cgctggaggg aggagaaatg 
     361 aaaaattgct ctttcaatat caccacaagc ataagagata aggtgaagaa agaatatgct 
     421 cttttttata gtcttgatgt agtaccaata gaaaatagta atactagcta taggttgata 
     481 agttgtaata cctcagtcat tacacaggcc tgtccaaagg tatcctttga gccaattccc 
     541 atacattatt gtgccccggc tggttttgcg attctaaagt gtaatgataa gaagttcagt 
     601 ggaaaaggat catgtaaaaa tgtcagcaca gtacagtgta cacatggaat taggccagta 
     661 gtggcaactc aactgcggtt aaatggcagt ttagcagaag aagaggtagt aattagatcc 
     721 gacaatttca cggacaatat taaaaacata atagtacagc tgaatgaatc tgtagaaatt 
     781 aattgtacaa gacccagcaa caatacaaga aaaagtatac atctaggacc aggcagtgca 
     841 ctttatgcaa caggagcaat aacaggagat ataagacaag cacattgtaa cattagtaga 
     901 gcaaaatgga ataacacttt aggacagata gttataaagt taagagaaca agtaagagaa 
     961 caatttaaga ataaaacaat agaaacaata gtctttaatc aatcctcagg aggggaccca 
    1021 gaaattgtaa tgcacagttt taattgtgga ggggaatttt tctactgtaa tacaacacaa 
    1081 ctatttaata gtacttggaa tgttaatagt acttggaatg gtactgaagg gtcaaataac 
    1141 actgaaggaa atgacacaat cacactccaa tgcagaataa aacaaattat aaacatgtgg 
    1201 caggaagtag gaaaagcaat gtatgcccct cccatcaggg gacaaattag gtgttcgtca 
    1261 aatattacag ggctgatatt aacaagagat ggtggtaatg ataataccac cacagagacc 
    1321 ttcagacctg gaggaggaaa tatgagggac aattggagaa gtgaattata taaatataaa 
    1381 gtagtaaaaa ttgaaccatt aggagtagca cccaccaagg caaagagaag agtggtgcag 
    1441 agagaaaaaa gagcagtggg aataggagga gcgatgttcc ttgggttctt gggagcagca 
    1501 ggaagcacta tgggcgcagc gtcactgacg ctgacggtac aggccagaca attattgtct 
    1561 ggtatagtgc aacagcagaa caatttgctg agggctattg aggcgcaaca gcatctgttg 
    1621 caactcacag tctggggcat caagcagctc caggcaagag tcctggctgt agaaagatac 
    1681 ctacaggatc aacagctcct ggggatttgg ggttgctctg gaaaactcat ctgcaccacc 
    1741 actgtgcctt ggaatactag ttggagtaat agatctcagg aggagatttg gggcaatttg 
    1801 acctggatgc agtgggaaaa ggaaattgat aattacacaa gcttaatata caccttaatt 
    1861 gaacaatcgc aaaaccaaca agaaaagaat gaacaagaat tattggaatt agataaatgg 
    1921 gcaaatttgt ggaattggtt tagcataaca aactggctgt ggtatataaa aatattcata 
    1981 atgatagtag gaggcttgat aggtttaaga atagtttttg ctgtactttc tatagtgaat 
    2041 agagttaggc agggatactc accattgtcg ttccagatcc gccccccagc tccaagggga 
    2101 cccgacaggc ccgaaggaat cgaagaagaa ggtggagaga gagacagaga cagatccggt 
    2161 ccattagtgg atggattctt agcaattatc tgggtcgacc tgcggagcct gtgcctcttc 
    2221 agctaccacc gcttgagaga ctttctcttg attgtaacga ggattgtgga acttctggga 
    2281 cgcagggggt gggaactcct caaatattgg tggaatctcc tccagtattg gagtcaggaa 
    2341 ctaaagaata gtgctattag cttgcttaat gccatagcca taacagtagc tgaggtgact 
    2401 gatagggtta tagaagtagt acaaagagct tacagggcta ttctccatat acctacacga 
    2461 ataagacagg gcttggaaag ggctttgcta 
//
last modified: Tue May 31 10:56 2022


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