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LOCUS	    HM001441		    1260 bp    DNA     linear	VRL 17-MAY-2010
DEFINITION  HIV-1 isolate AM2712 from USA envelope glycoprotein (env) gene,
	    partial cds
ACCESSION   HM001441
VERSION     HM001441.1 GI:295984581
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1260)
            Show all sequences for reference 1
  AUTHORS   Lamers,S.L., Salemi,M., Galligan,D.C., de Oliveira,T., Fogel,G.B.,
	    Granier,S.C., Zhao,L., Brown,J.N., Morris,A., Masliah,E. and
	    McGrath,M.S.
  TITLE     Extensive HIV-1 intra-host recombination is common in tissues with
	    abnormal histopathology
  JOURNAL   PLoS ONE 4 (3), E5065 (2009)
  PUBMED    19333384
REFERENCE   2 (bases 1 to 1260)
            Show all sequences for reference 2
  AUTHORS   Lamers,S., Salemi,M., Galligan,D.C., de Oliveira,T., Fogel,G.B.,
	    Granier,S.C., Zhao,L., Brown,J.N., Morris,A., Masliah,E. and
	    McGrath,M.S.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAR-2010) Department of Medicine, University of
	    California at San Francisco, 1001 Potrero Ave, San Francisco, CA
	    94110, USA
FEATURES             Location/Qualifiers
     source	     1..1260
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolate="AM2712"
		     /isolation_source="normal-diaphragm from frozen autopsy
		     tissue"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="USA"
     gene	     <1..>1260
		     /gene="env"
     CDS	     <1..>1260
		     /gene="env"
		     /note="gp120"
		     /codon_start="1"
		     /transl_table="1"
		     /product="envelope glycoprotein"
		     /protein_id="ADG63749.1"
		     /db_xref="GI:295984582"
		     /translation="KNNMVEQMQEDVISLWDQSLKPCVKLTPLCVTLDCTNATVTNET
		     NSNGNNGTNNKGNFTIEEVKNCSFNITTSIRDKVQKEYALFYKIDIVPIDDDETYNRT
		     SNNKTRRYRLISCNTSVITQACPKVTFEPIPIHYCAPAGFAILKCNNKTFNGTGPCKN
		     VSTVQCTHGIKPVVSTQLLLNGSLAEEGVVIRSENFTNNAKIIIVQLNKSVKINCTRP
		     GNNTRKSIHIGPGRAFYTTGEIIGDIRKAHCKINGTEWNNTLKQIAAKLGEQFGNNKT
		     IAFNQSSGGDPEIVSHSFNCGGEFFYCDTAQLFNSTWSNINGTWNSNGTWNSTAGSNN
		     TITLPCRIKQIINMWQEVGKAMYAPPIRGNISCSSIITGLLLTRDGGNGNNSNGTETF
		     RPGGGDMRDNWRSELYKYKVVKIEPLGI"
BASE COUNT	500 a	 188 c	  256 g    316 t
ORIGIN
       1 aaaaataaca tggtagaaca gatgcaggag gatgtaatta gtttatggga tcaaagccta 
      61 aagccatgtg taaaattaac cccactctgt gttactttag attgcactaa cgcaactgtt 
     121 actaatgaaa ctaatagtaa cgggaataat ggaactaata ataaagggaa ctttactata 
     181 gaagaagtaa aaaactgctc tttcaatatc accacaagca taagagataa ggtgcagaaa 
     241 gaatatgcat tgttttataa aattgatata gtaccaatag atgatgatga gacctataat 
     301 agaaccagta ataataagac cagaagatat aggttgataa gttgtaacac ctcagtcatt 
     361 acacaggcct gtccaaaggt aacctttgag ccaattccca tacattattg tgccccggct 
     421 ggttttgcta ttctaaagtg taacaataag acgttcaatg gaacaggacc atgtaaaaat 
     481 gtcagcacag tacaatgtac acatggaatt aagccagtgg tatcaactca actactgtta 
     541 aatggcagtc tagcagaaga gggggtagta attagatctg aaaattttac aaacaatgct 
     601 aaaatcataa tagtacagct gaataaatct gtaaaaatta attgtacaag accaggcaac 
     661 aatacaagaa agagtataca tataggacca gggagagcat tttatacaac aggagaaata 
     721 ataggagata taagaaaagc acattgtaaa attaatggaa cagaatggaa caacacttta 
     781 aaacagatag ctgcaaaatt aggagaacaa tttgggaata ataaaacaat agcctttaat 
     841 caatcctcag gaggggaccc agaaattgta agccacagtt ttaattgtgg aggggaattt 
     901 ttctactgtg atacagcaca actgtttaat agtacttgga gtaatattaa tggtacttgg 
     961 aatagtaatg gtacttggaa tagtactgca gggtcaaata acactatcac actcccatgc 
    1021 agaataaaac agattataaa catgtggcag gaagtaggaa aggcaatgta tgcccctccc 
    1081 atcagaggaa acattagctg ttcatcaatt attacagggc tgttattaac aagagatggt 
    1141 ggtaatggta acaacagtaa cgggactgag accttcagac ctggaggagg agatatgagg 
    1201 gacaattgga gaagtgaatt atataaatat aaagtagtaa aaattgaacc attaggaata 
//
last modified: Tue May 31 10:56 2022


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