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LOCUS	    HM001438		    1236 bp    DNA     linear	VRL 17-MAY-2010
DEFINITION  HIV-1 isolate AM1047T from USA envelope glycoprotein (env) gene,
	    partial cds
ACCESSION   HM001438
VERSION     HM001438.1 GI:295984575
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1236)
            Show all sequences for reference 1
  AUTHORS   Lamers,S.L., Salemi,M., Galligan,D.C., de Oliveira,T., Fogel,G.B.,
	    Granier,S.C., Zhao,L., Brown,J.N., Morris,A., Masliah,E. and
	    McGrath,M.S.
  TITLE     Extensive HIV-1 intra-host recombination is common in tissues with
	    abnormal histopathology
  JOURNAL   PLoS ONE 4 (3), E5065 (2009)
  PUBMED    19333384
REFERENCE   2 (bases 1 to 1236)
            Show all sequences for reference 2
  AUTHORS   Lamers,S., Salemi,M., Galligan,D.C., de Oliveira,T., Fogel,G.B.,
	    Granier,S.C., Zhao,L., Brown,J.N., Morris,A., Masliah,E. and
	    McGrath,M.S.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAR-2010) Department of Medicine, University of
	    California at San Francisco, 1001 Potrero Ave, San Francisco, CA
	    94110, USA
FEATURES             Location/Qualifiers
     source	     1..1236
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolate="AM1047T"
		     /isolation_source="liver-with-tumor from frozen autopsy
		     tissue"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="USA"
     gene	     <1..>1236
		     /gene="env"
     CDS	     <1..>1236
		     /gene="env"
		     /note="gp120"
		     /codon_start="1"
		     /transl_table="1"
		     /product="envelope glycoprotein"
		     /protein_id="ADG63746.1"
		     /db_xref="GI:295984576"
		     /translation="KNNMVEQMQEDVISLWDQSLKPCVKLTPLCVTLECTNATAINKT
		     CSTNRTNNQNCSFTMEEVKNCSFNITTSIRDKVQKEYALFYKIDIVPIDDDETYNSTI
		     NNKTRRYRLISCNTSVITQACPKVTFEPIPIHYCAPAGFAILKCNNKTFNGTGPCKNV
		     STVQCTHEIKPVVSTQLLLNGSLAEKEVVVRSENFTNNAKIIIVQLDKFVKINCTRPG
		     NNTRKSIHIGPGRAFYTTGEIIGDIRQAHCNLSGAEWNNTLKQIVQKLGEQFGNNKTI
		     FTQSSGGDPEIVMHSFNCGGEFFYCNTSQLFNSTWNNNNGTWNSTAGSNNTIILPCRI
		     KQIINMWQEIGKAMYAPPISGNISCSSNITGLLLTRDGGNGNSSNGTEIFRPGGGDMR
		     DNWRSELYKYKVVKIEPLGI"
BASE COUNT	488 a	 188 c	  242 g    318 t
ORIGIN
       1 aaaaataaca tggtagaaca gatgcaggag gatgtaatta gtttatggga tcaaagccta 
      61 aagccatgtg taaaattaac cccactctgt gttactttag agtgcactaa cgcgactgct 
     121 attaataaaa cttgtagtac taacaggact aataatcaaa attgtagctt tactatggaa 
     181 gaagtaaaaa actgctcttt caatatcacc acaagcataa gagataaggt gcagaaagaa 
     241 tatgcattgt tttataaaat tgatatagta ccaatagatg atgatgagac ctataatagc 
     301 accattaata ataagaccag aagatatagg ttgataagtt gtaacacctc agtcattaca 
     361 caggcctgtc caaaggtaac ctttgagcca attcccatac attattgtgc cccggctggt 
     421 tttgctattc taaagtgtaa caataagacg ttcaatggaa caggaccatg taaaaatgtc 
     481 agcacagtac aatgtacaca tgaaattaag ccagtggtat caactcaact gctgttaaat 
     541 ggcagtctag cagaaaagga ggtagtagtt agatctgaaa atttcacaaa caatgctaaa 
     601 atcataatag tacagctgga taaatttgta aaaattaatt gtacaagacc aggtaacaat 
     661 acaagaaaaa gtatacatat aggaccaggg agagcatttt atacaacagg agaaataata 
     721 ggagatataa gacaagcaca ttgtaacctt agtggagcag aatggaacaa cactttaaaa 
     781 cagatagttc aaaaattagg agaacaattt gggaataata aaacaatctt tactcaatcc 
     841 tcaggagggg acccagaaat tgtaatgcac agttttaatt gtggaggaga atttttctac 
     901 tgtaatacat cacaactgtt taatagtact tggaataata ataatggtac ttggaatagt 
     961 actgcagggt caaataacac tatcatactc ccatgcagaa taaaacaaat tataaacatg 
    1021 tggcaggaaa taggaaaagc aatgtatgcc cctcccatca gcggaaacat tagctgttca 
    1081 tcaaatatta cagggctgct attaacaaga gatggtggta atggtaatag cagtaacggg 
    1141 actgagatct ttagacctgg aggaggagat atgagggaca attggagaag tgaattatat 
    1201 aaatataaag tagtaaaaat tgaaccatta ggaata
//
last modified: Tue May 31 10:56 2022


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