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LOCUS HM001438 1236 bp DNA linear VRL 17-MAY-2010
DEFINITION HIV-1 isolate AM1047T from USA envelope glycoprotein (env) gene,
partial cds
ACCESSION HM001438
VERSION HM001438.1 GI:295984575
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1236)
Show all sequences for reference 1
AUTHORS Lamers,S.L., Salemi,M., Galligan,D.C., de Oliveira,T., Fogel,G.B.,
Granier,S.C., Zhao,L., Brown,J.N., Morris,A., Masliah,E. and
McGrath,M.S.
TITLE Extensive HIV-1 intra-host recombination is common in tissues with
abnormal histopathology
JOURNAL PLoS ONE 4 (3), E5065 (2009)
PUBMED 19333384
REFERENCE 2 (bases 1 to 1236)
Show all sequences for reference 2
AUTHORS Lamers,S., Salemi,M., Galligan,D.C., de Oliveira,T., Fogel,G.B.,
Granier,S.C., Zhao,L., Brown,J.N., Morris,A., Masliah,E. and
McGrath,M.S.
TITLE Direct Submission
JOURNAL Submitted (12-MAR-2010) Department of Medicine, University of
California at San Francisco, 1001 Potrero Ave, San Francisco, CA
94110, USA
FEATURES Location/Qualifiers
source 1..1236
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="AM1047T"
/isolation_source="liver-with-tumor from frozen autopsy
tissue"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="USA"
gene <1..>1236
/gene="env"
CDS <1..>1236
/gene="env"
/note="gp120"
/codon_start="1"
/transl_table="1"
/product="envelope glycoprotein"
/protein_id="ADG63746.1"
/db_xref="GI:295984576"
/translation="KNNMVEQMQEDVISLWDQSLKPCVKLTPLCVTLECTNATAINKT
CSTNRTNNQNCSFTMEEVKNCSFNITTSIRDKVQKEYALFYKIDIVPIDDDETYNSTI
NNKTRRYRLISCNTSVITQACPKVTFEPIPIHYCAPAGFAILKCNNKTFNGTGPCKNV
STVQCTHEIKPVVSTQLLLNGSLAEKEVVVRSENFTNNAKIIIVQLDKFVKINCTRPG
NNTRKSIHIGPGRAFYTTGEIIGDIRQAHCNLSGAEWNNTLKQIVQKLGEQFGNNKTI
FTQSSGGDPEIVMHSFNCGGEFFYCNTSQLFNSTWNNNNGTWNSTAGSNNTIILPCRI
KQIINMWQEIGKAMYAPPISGNISCSSNITGLLLTRDGGNGNSSNGTEIFRPGGGDMR
DNWRSELYKYKVVKIEPLGI"
BASE COUNT 488 a 188 c 242 g 318 t
ORIGIN
1 aaaaataaca tggtagaaca gatgcaggag gatgtaatta gtttatggga tcaaagccta
61 aagccatgtg taaaattaac cccactctgt gttactttag agtgcactaa cgcgactgct
121 attaataaaa cttgtagtac taacaggact aataatcaaa attgtagctt tactatggaa
181 gaagtaaaaa actgctcttt caatatcacc acaagcataa gagataaggt gcagaaagaa
241 tatgcattgt tttataaaat tgatatagta ccaatagatg atgatgagac ctataatagc
301 accattaata ataagaccag aagatatagg ttgataagtt gtaacacctc agtcattaca
361 caggcctgtc caaaggtaac ctttgagcca attcccatac attattgtgc cccggctggt
421 tttgctattc taaagtgtaa caataagacg ttcaatggaa caggaccatg taaaaatgtc
481 agcacagtac aatgtacaca tgaaattaag ccagtggtat caactcaact gctgttaaat
541 ggcagtctag cagaaaagga ggtagtagtt agatctgaaa atttcacaaa caatgctaaa
601 atcataatag tacagctgga taaatttgta aaaattaatt gtacaagacc aggtaacaat
661 acaagaaaaa gtatacatat aggaccaggg agagcatttt atacaacagg agaaataata
721 ggagatataa gacaagcaca ttgtaacctt agtggagcag aatggaacaa cactttaaaa
781 cagatagttc aaaaattagg agaacaattt gggaataata aaacaatctt tactcaatcc
841 tcaggagggg acccagaaat tgtaatgcac agttttaatt gtggaggaga atttttctac
901 tgtaatacat cacaactgtt taatagtact tggaataata ataatggtac ttggaatagt
961 actgcagggt caaataacac tatcatactc ccatgcagaa taaaacaaat tataaacatg
1021 tggcaggaaa taggaaaagc aatgtatgcc cctcccatca gcggaaacat tagctgttca
1081 tcaaatatta cagggctgct attaacaaga gatggtggta atggtaatag cagtaacggg
1141 actgagatct ttagacctgg aggaggagat atgagggaca attggagaag tgaattatat
1201 aaatataaag tagtaaaaat tgaaccatta ggaata
//
last modified: Tue May 31 10:56 2022