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LOCUS HG529968 1753 bp RNA linear VRL 18-OCT-2013
DEFINITION HIV-1 M:CRF02_AG partial pol gene for polyprotein, protease and
partial reverse transcriptase region, isolate SR0047-1598-21
ACCESSION HG529968
VERSION HG529968.1 GI:550593872
KEYWORDS .
SOURCE HIV-1 M:CRF02_AG
ORGANISM HIV-1 M:CRF02_AG Viruses; Retro-transcribing viruses; Retroviridae;
Orthoretrovirinae; Lentivirus; Primate lentivirus group
REFERENCE 1
Show all sequences for reference 1
AUTHORS Somda,A., Sangare,L., Soro,M., Yameogo,S., Bazie,B., Bigirimana,F.,
Bertagnolio,S., Peeters,M., Mouacha,F., Rivera,A.M., Jordan,M.R.
and Sanou,M.J.
TITLE Surveillance of transmitted drug-resistant HIV among young pregnant
women in Ouagadougou, Burkina Faso
JOURNAL Clin. Infect. Dis. 54 (SUPPL 4), S317-S319 (2012)
PUBMED 22544195
REFERENCE 2 (bases 1 to 1753)
Show all sequences for reference 2
AUTHORS Vidal,N.
TITLE Direct Submission
JOURNAL Submitted (19-SEP-2013) UMR145, IRD, 911 avenue Agropolis, 34394
Montpellier cedex 5, FRANCE
FEATURES Location/Qualifiers
source 1..1753
/organism="HIV-1 M:CRF02_AG"
/mol_type="genomic RNA"
/isolate="SR0047-1598-21"
/db_xref="taxon:1287874"
/country="Burkina Faso"
/collection_date="2009"
gene <1..>1753
/gene="pol"
CDS <1..>1753
/gene="pol"
/note="protease and partial reverse transcriptase region"
/codon_start="1"
/transl_table="1"
/product="polyprotein"
/protein_id="CDI40239.1"
/db_xref="GI:550593873"
/translation="FFRENLAFQQGXARKFSSEQTGTNSPTSREPRDGGRDSLLSEAG
AGGQGNIPSVNFPQITLWQRPIVTVKIGGQLIEALLDTGADDTVLEEINLPGKWKPKM
IGGIGGFIKVRQYDQILIEIYGKKAIGTVLVGPTPVNIIGRNMLTQIGCTLNFPISPI
ETVPVKLKPGMDGPKVKQWPLTEEKIKALTDICTEMEKEGKISKIGPENPYNTPVFAI
KKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLD
ETFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQASMTKILEPFRARNPELV
IYQYMDDLYVGSNLEIGQHRAKIEELREHLLKWGFTTPDKKHQKEPPFLWMGYELHPD
KWTVQPIQLPEKDSWTVNDIQKLVGKLNWASQIYAGIKVKQLCKLLRGAKALTEIVTL
TEEAELELAENREILKEPVHGVYYDPAKDLVAEIQKQGQDQWTYQIYQEPFKNLKTGK
YAKKRSAHTNDVKQLTEVVQKVAIESIVIWGKTPKFRLPIQKETWEAWWMEYWQATWI
PEWEFVNTPPLVKLWYQL"
BASE COUNT 675 a 304 c 383 g 387 t 4 other
ORIGIN
1 ttttttaggg aaaatttggc cttccaacaa gggraggcca ggaaattttc ctcagagcag
61 accggaacca acagccccac cagcagagag cctcgggatg ggggaagaga tagcctcctc
121 tccgaagcag gagccggggg acaagggaay ataccctccg ttaacttccc tcaaatcact
181 ctttggcaac gacccatagt cacagtaaaa atagggggac agctaataga agccctatta
241 gacacaggag cagatgatac agtattagag gaaataaatt taccaggaaa atggaaacca
301 aaaatgatag ggggaattgg aggttttatc aaagtaagac aatatgatca gatacttata
361 gaaatttatg gaaaaaaggc cataggtaca gtattagtag gacctacacc tgtcaacata
421 attgggcgaa atatgttgac tcagattggt tgtactytaa attttcccat tagtcctatt
481 gaaactgtgc cagtaaaatt aaagccagga atggatggcc caaaggttaa acaatggcca
541 ttgacagaag aaaaaataaa agcattaaca gacatttgta cagagatgga aaaggaggga
601 aaaatttcaa aaattgggcc tgaaaatcca tataatactc cagtatttgc cataaagaaa
661 aaagatagta ctaaatggag aaaattagta gatttcagag agcttaataa ragaactcaa
721 gacttctggg aggtccaatt aggaatacct catcccgcgg gattaaagaa gaagaaatca
781 gtaacagtac tagatgtagg ggatgcatat ttttcagttc ctttagatga aacttttaga
841 aagtatactg cattcactat acctagtaca aacaatgaga caccagggat tagatatcag
901 tacaatgtgc ttccacaggg atggaaagga tcaccagcaa tatttcaggc aagcatgaca
961 aaaatcttag agccctttag ggcaagaaat ccagagttgg tgatctacca atatatggat
1021 gatttatatg taggatctaa tctagaaata gggcagcaca gagcaaaaat agaggagtta
1081 agagagcatc tactaaaatg gggatttacc acaccagaca aaaaacatca gaaagaacct
1141 ccatttcttt ggatgggata tgaactccat cctgacaaat ggacagtcca gcctatacag
1201 ctgccagaaa aagacagctg gactgtcaat gatatacaaa aattagtggg aaaactaaat
1261 tgggcaagtc agatttatgc aggaattaaa gtaaaacaac tatgtaaact cctcagggga
1321 gccaaggcgc taacagaaat agtgacactg actgaggaag cagaattaga attggcagag
1381 aacagagaaa ttctaaaaga acctgtacat ggagtatatt atgacccagc aaaagactta
1441 gtagcagaaa tacaaaaaca agggcaagac caatggacat atcaaattta tcaagagcca
1501 tttaagaatc taaaaacagg aaaatatgca aaaaagaggt ctgcccacac taatgatgta
1561 aaacaattaa cagaggtagt gcaaaaagtg gctatagaaa gcatagtaat ctggggaaag
1621 acccctaaat tcagactacc catacaaaaa gaaacatggg aagcatggtg gatggagtat
1681 tggcaggcta cctggattcc tgagtgggag tttgtcaata cccctcctct agtaaaatta
1741 tggtaccagt tag
//
last modified: Tue May 31 10:56 2022