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LOCUS	    HG529968		    1753 bp    RNA     linear	VRL 18-OCT-2013
DEFINITION  HIV-1 M:CRF02_AG partial pol gene for polyprotein, protease and
	    partial reverse transcriptase region, isolate SR0047-1598-21
ACCESSION   HG529968
VERSION     HG529968.1 GI:550593872
KEYWORDS    .
SOURCE	    HIV-1 M:CRF02_AG
  ORGANISM  HIV-1 M:CRF02_AG Viruses; Retro-transcribing viruses; Retroviridae;
	    Orthoretrovirinae; Lentivirus; Primate lentivirus group
REFERENCE   1
            Show all sequences for reference 1
  AUTHORS   Somda,A., Sangare,L., Soro,M., Yameogo,S., Bazie,B., Bigirimana,F.,
	    Bertagnolio,S., Peeters,M., Mouacha,F., Rivera,A.M., Jordan,M.R.
	    and Sanou,M.J.
  TITLE     Surveillance of transmitted drug-resistant HIV among young pregnant
	    women in Ouagadougou, Burkina Faso
  JOURNAL   Clin. Infect. Dis. 54 (SUPPL 4), S317-S319 (2012)
  PUBMED    22544195
REFERENCE   2 (bases 1 to 1753)
            Show all sequences for reference 2
  AUTHORS   Vidal,N.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-SEP-2013) UMR145, IRD, 911 avenue Agropolis, 34394
	    Montpellier cedex 5, FRANCE
FEATURES             Location/Qualifiers
     source	     1..1753
		     /organism="HIV-1 M:CRF02_AG"
		     /mol_type="genomic RNA"
		     /isolate="SR0047-1598-21"
		     /db_xref="taxon:1287874"
		     /country="Burkina Faso"
		     /collection_date="2009"
     gene	     <1..>1753
		     /gene="pol"
     CDS	     <1..>1753
		     /gene="pol"
		     /note="protease and partial reverse transcriptase region"
		     /codon_start="1"
		     /transl_table="1"
		     /product="polyprotein"
		     /protein_id="CDI40239.1"
		     /db_xref="GI:550593873"
		     /translation="FFRENLAFQQGXARKFSSEQTGTNSPTSREPRDGGRDSLLSEAG
		     AGGQGNIPSVNFPQITLWQRPIVTVKIGGQLIEALLDTGADDTVLEEINLPGKWKPKM
		     IGGIGGFIKVRQYDQILIEIYGKKAIGTVLVGPTPVNIIGRNMLTQIGCTLNFPISPI
		     ETVPVKLKPGMDGPKVKQWPLTEEKIKALTDICTEMEKEGKISKIGPENPYNTPVFAI
		     KKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLD
		     ETFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQASMTKILEPFRARNPELV
		     IYQYMDDLYVGSNLEIGQHRAKIEELREHLLKWGFTTPDKKHQKEPPFLWMGYELHPD
		     KWTVQPIQLPEKDSWTVNDIQKLVGKLNWASQIYAGIKVKQLCKLLRGAKALTEIVTL
		     TEEAELELAENREILKEPVHGVYYDPAKDLVAEIQKQGQDQWTYQIYQEPFKNLKTGK
		     YAKKRSAHTNDVKQLTEVVQKVAIESIVIWGKTPKFRLPIQKETWEAWWMEYWQATWI
		     PEWEFVNTPPLVKLWYQL"
BASE COUNT	675 a	 304 c	  383 g    387 t      4 other
ORIGIN
       1 ttttttaggg aaaatttggc cttccaacaa gggraggcca ggaaattttc ctcagagcag 
      61 accggaacca acagccccac cagcagagag cctcgggatg ggggaagaga tagcctcctc 
     121 tccgaagcag gagccggggg acaagggaay ataccctccg ttaacttccc tcaaatcact 
     181 ctttggcaac gacccatagt cacagtaaaa atagggggac agctaataga agccctatta 
     241 gacacaggag cagatgatac agtattagag gaaataaatt taccaggaaa atggaaacca 
     301 aaaatgatag ggggaattgg aggttttatc aaagtaagac aatatgatca gatacttata 
     361 gaaatttatg gaaaaaaggc cataggtaca gtattagtag gacctacacc tgtcaacata 
     421 attgggcgaa atatgttgac tcagattggt tgtactytaa attttcccat tagtcctatt 
     481 gaaactgtgc cagtaaaatt aaagccagga atggatggcc caaaggttaa acaatggcca 
     541 ttgacagaag aaaaaataaa agcattaaca gacatttgta cagagatgga aaaggaggga 
     601 aaaatttcaa aaattgggcc tgaaaatcca tataatactc cagtatttgc cataaagaaa 
     661 aaagatagta ctaaatggag aaaattagta gatttcagag agcttaataa ragaactcaa 
     721 gacttctggg aggtccaatt aggaatacct catcccgcgg gattaaagaa gaagaaatca 
     781 gtaacagtac tagatgtagg ggatgcatat ttttcagttc ctttagatga aacttttaga 
     841 aagtatactg cattcactat acctagtaca aacaatgaga caccagggat tagatatcag 
     901 tacaatgtgc ttccacaggg atggaaagga tcaccagcaa tatttcaggc aagcatgaca 
     961 aaaatcttag agccctttag ggcaagaaat ccagagttgg tgatctacca atatatggat 
    1021 gatttatatg taggatctaa tctagaaata gggcagcaca gagcaaaaat agaggagtta 
    1081 agagagcatc tactaaaatg gggatttacc acaccagaca aaaaacatca gaaagaacct 
    1141 ccatttcttt ggatgggata tgaactccat cctgacaaat ggacagtcca gcctatacag 
    1201 ctgccagaaa aagacagctg gactgtcaat gatatacaaa aattagtggg aaaactaaat 
    1261 tgggcaagtc agatttatgc aggaattaaa gtaaaacaac tatgtaaact cctcagggga 
    1321 gccaaggcgc taacagaaat agtgacactg actgaggaag cagaattaga attggcagag 
    1381 aacagagaaa ttctaaaaga acctgtacat ggagtatatt atgacccagc aaaagactta 
    1441 gtagcagaaa tacaaaaaca agggcaagac caatggacat atcaaattta tcaagagcca 
    1501 tttaagaatc taaaaacagg aaaatatgca aaaaagaggt ctgcccacac taatgatgta 
    1561 aaacaattaa cagaggtagt gcaaaaagtg gctatagaaa gcatagtaat ctggggaaag 
    1621 acccctaaat tcagactacc catacaaaaa gaaacatggg aagcatggtg gatggagtat 
    1681 tggcaggcta cctggattcc tgagtgggag tttgtcaata cccctcctct agtaaaatta 
    1741 tggtaccagt tag
//
last modified: Tue May 31 10:56 2022


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