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LOCUS GU966574 882 bp RNA linear VRL 21-APR-2010
DEFINITION HIV-2 isolate 20080618 from Luxembourg integrase (pol) gene,
partial cds
ACCESSION GU966574
VERSION GU966574.1 GI:294829092
KEYWORDS .
SOURCE Human immunodeficiency virus 2 (HIV-2)
ORGANISM Human immunodeficiency virus 2 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 882)
Show all sequences for reference 1
AUTHORS Perez-Bercoff,D., Triqueneaux,P., Lambert,C., Oumar,A.A.,
Ternes,A.-M., Goubau,P., Schmit,J.-C. and Ruelle,J.P.
TITLE Direct Submission
JOURNAL Submitted (03-MAR-2010) AIDS Reference Laboratory, UC Louvain,
Avenue Hippocrate 54 - UCL 5492, Bruxelles 1200, Belgium
REFERENCE 2
Show all sequences for reference 2
AUTHORS Perez Bercoff,D., Trinqueneaux,P., Lambert,C., Oumar,A.A.,
Ternes,A.M., Dao,S., Goubau,P., Schmit,J.C. and Ruelle,J.
TITLE Polymorphisms of HIV-2 integrase and selection of resistance to
raltegravir
JOURNAL Retrovirology 7 (1), 98 (2010)
PUBMED 21114823
FEATURES Location/Qualifiers
source 1..882
/organism="Human immunodeficiency virus 2"
/mol_type="genomic RNA"
/isolate="20080618"
/host="Homo sapiens"
/db_xref="taxon:11709"
/country="Luxembourg"
/collection_date="19-Jun-2008"
/note="group: A"
gene <1..882
/gene="pol"
CDS <1..882
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="integrase"
/protein_id="ADF42981.1"
/db_xref="GI:294829093"
/translation="FLEKIEPAQEEHEKYHSNIKELSHKFGIPKLVARQIVNTCAQCQ
QKGEAIHGQVNAELGTWQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLL
KLASRWPITHLHTDNGANFTSQEVKMVAWWVGIEQTFGVPYNPQSQGVVEAMNHHLKN
QIDRIRDQANTVETIVLMAVHCMNFKRRGGIGDMTPSERLINMITTEQEIQFLQXKNS
KLKNFRVYFREGRDQLWKGPGELLWKGDGAVIVKVGADIKIIPRRKAKIIRDYGGRQE
VDSGPHLEGXREDGEVA"
BASE COUNT 336 a 150 c 210 g 168 t 18 other
ORIGIN
1 ttcctggaaa aaatagagcc cgctcaggar gaacatgaaa aatatcatag caatataaaa
61 gaactgtccc ataaatttgg aatacccaaa ctagtrgcaa gacaaatagt aaacacatgt
121 gcccaatgtc aacagaaagg ggargctata catgggcaag taaatgcaga actrggcact
181 tggcaaatgg actgcacaca tytrgaagga aaaatcatca tagtrgcagt acatgttgca
241 agtggrttta tagaagcaga agttatccca caggaaacag gaagrcarac agcactcttc
301 ctgttaaaat tggcaagtag gtggccaata acacacttgc atacagataa tggtgccaac
361 ttcacttcac aggaagtgaa ratggtagca tggtgggtag gtatagaaca aacctttgga
421 gtaccttaca atccacagag ccaaggagta gtagaagcaa tgaaycacca cctraagaac
481 cagatagata gaattagaga tcaggcaaat acagtagaga caatagtact ratggcagtt
541 cattgcatga attttaaaag aaggggagga ataggggata tgaccccatc agaaagatta
601 atcaatatga tcaccacaga rcaagagata caattcctcc aarcaaaaaa ttcaaaatta
661 aaaaattttc gggtctattt cagagaaggc agagatcagt tgtggaaagg acctggggaa
721 ctactgtgga agggagacgg agcagtcata gtcaaggtag gagcagacat aaaaataata
781 ccaagaagaa aagccaagat catcagagac tatggaggaa ggcaagaggt ggatagyggt
841 ccccacctgg agggtrccag ggaggatgga gaagtggcat ag
//
last modified: Tue May 31 10:56 2022