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LOCUS	    GU966574		     882 bp    RNA     linear	VRL 21-APR-2010
DEFINITION  HIV-2 isolate 20080618 from Luxembourg integrase (pol) gene,
	    partial cds
ACCESSION   GU966574
VERSION     GU966574.1 GI:294829092
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 2 (HIV-2)
  ORGANISM  Human immunodeficiency virus 2 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 882)
            Show all sequences for reference 1
  AUTHORS   Perez-Bercoff,D., Triqueneaux,P., Lambert,C., Oumar,A.A.,
	    Ternes,A.-M., Goubau,P., Schmit,J.-C. and Ruelle,J.P.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-MAR-2010) AIDS Reference Laboratory, UC Louvain,
	    Avenue Hippocrate 54 - UCL 5492, Bruxelles 1200, Belgium
REFERENCE   2
            Show all sequences for reference 2
  AUTHORS   Perez Bercoff,D., Trinqueneaux,P., Lambert,C., Oumar,A.A.,
	    Ternes,A.M., Dao,S., Goubau,P., Schmit,J.C. and Ruelle,J.
  TITLE     Polymorphisms of HIV-2 integrase and selection of resistance to
	    raltegravir
  JOURNAL   Retrovirology 7 (1), 98 (2010)
  PUBMED    21114823
FEATURES             Location/Qualifiers
     source	     1..882
		     /organism="Human immunodeficiency virus 2"
		     /mol_type="genomic RNA"
		     /isolate="20080618"
		     /host="Homo sapiens"
		     /db_xref="taxon:11709"
		     /country="Luxembourg"
		     /collection_date="19-Jun-2008"
		     /note="group: A"
     gene	     <1..882
		     /gene="pol"
     CDS	     <1..882
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="integrase"
		     /protein_id="ADF42981.1"
		     /db_xref="GI:294829093"
		     /translation="FLEKIEPAQEEHEKYHSNIKELSHKFGIPKLVARQIVNTCAQCQ
		     QKGEAIHGQVNAELGTWQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLL
		     KLASRWPITHLHTDNGANFTSQEVKMVAWWVGIEQTFGVPYNPQSQGVVEAMNHHLKN
		     QIDRIRDQANTVETIVLMAVHCMNFKRRGGIGDMTPSERLINMITTEQEIQFLQXKNS
		     KLKNFRVYFREGRDQLWKGPGELLWKGDGAVIVKVGADIKIIPRRKAKIIRDYGGRQE
		     VDSGPHLEGXREDGEVA"
BASE COUNT	336 a	 150 c	  210 g    168 t     18 other
ORIGIN
       1 ttcctggaaa aaatagagcc cgctcaggar gaacatgaaa aatatcatag caatataaaa 
      61 gaactgtccc ataaatttgg aatacccaaa ctagtrgcaa gacaaatagt aaacacatgt 
     121 gcccaatgtc aacagaaagg ggargctata catgggcaag taaatgcaga actrggcact 
     181 tggcaaatgg actgcacaca tytrgaagga aaaatcatca tagtrgcagt acatgttgca 
     241 agtggrttta tagaagcaga agttatccca caggaaacag gaagrcarac agcactcttc 
     301 ctgttaaaat tggcaagtag gtggccaata acacacttgc atacagataa tggtgccaac 
     361 ttcacttcac aggaagtgaa ratggtagca tggtgggtag gtatagaaca aacctttgga 
     421 gtaccttaca atccacagag ccaaggagta gtagaagcaa tgaaycacca cctraagaac 
     481 cagatagata gaattagaga tcaggcaaat acagtagaga caatagtact ratggcagtt 
     541 cattgcatga attttaaaag aaggggagga ataggggata tgaccccatc agaaagatta 
     601 atcaatatga tcaccacaga rcaagagata caattcctcc aarcaaaaaa ttcaaaatta 
     661 aaaaattttc gggtctattt cagagaaggc agagatcagt tgtggaaagg acctggggaa 
     721 ctactgtgga agggagacgg agcagtcata gtcaaggtag gagcagacat aaaaataata 
     781 ccaagaagaa aagccaagat catcagagac tatggaggaa ggcaagaggt ggatagyggt 
     841 ccccacctgg agggtrccag ggaggatgga gaagtggcat ag
//
last modified: Tue May 31 10:56 2022


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