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LOCUS	    GU966550		     882 bp    RNA     linear	VRL 21-APR-2010
DEFINITION  HIV-2 isolate 19990547 from Luxembourg integrase (pol) gene,
	    partial cds
ACCESSION   GU966550
VERSION     GU966550.1 GI:294829044
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 2 (HIV-2)
  ORGANISM  Human immunodeficiency virus 2 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 882)
            Show all sequences for reference 1
  AUTHORS   Perez-Bercoff,D., Triqueneaux,P., Lambert,C., Oumar,A.A.,
	    Ternes,A.-M., Goubau,P., Schmit,J.-C. and Ruelle,J.P.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-MAR-2010) AIDS Reference Laboratory, UC Louvain,
	    Avenue Hippocrate 54 - UCL 5492, Bruxelles 1200, Belgium
REFERENCE   2
            Show all sequences for reference 2
  AUTHORS   Perez Bercoff,D., Trinqueneaux,P., Lambert,C., Oumar,A.A.,
	    Ternes,A.M., Dao,S., Goubau,P., Schmit,J.C. and Ruelle,J.
  TITLE     Polymorphisms of HIV-2 integrase and selection of resistance to
	    raltegravir
  JOURNAL   Retrovirology 7 (1), 98 (2010)
  PUBMED    21114823
FEATURES             Location/Qualifiers
     source	     1..882
		     /organism="Human immunodeficiency virus 2"
		     /mol_type="genomic RNA"
		     /isolate="19990547"
		     /host="Homo sapiens"
		     /db_xref="taxon:11709"
		     /country="Luxembourg"
		     /collection_date="14-Oct-1999"
		     /note="group: A"
     gene	     <1..882
		     /gene="pol"
     CDS	     <1..882
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="integrase"
		     /protein_id="ADF42957.1"
		     /db_xref="GI:294829045"
		     /translation="FLERIEPAQEEHEKYHSNVKELSHKFGIPKLVARQIVNTCAQCQ
		     QKGEAIHGQVNAELGTWQMDCTHLEGKIIIVAVHVASGFIEAEVIPQESGRQTALFLL
		     KLASRWPITHLHTDNGANFTSQEVKMVAWWVGIEQSFGVPYNPQSQGVVEAMNHHLKN
		     QISKIREQANTIETIVLMAVHCMNFKRRGGIGDMTPAERLINMITTEQEIQFLXAKNS
		     KFKNFQVYYREGRDQQWKGPGELLWKGEGAVIVKVGADIKIIPRRKAKIIKDYGGRQE
		     LDSGXHLEGAREDGEVA"
BASE COUNT	339 a	 152 c	  211 g    165 t     15 other
ORIGIN
       1 tttctagaaa gaatagagcc cgctcaggaa gaacatgaaa aataycatag caatgtaaaa 
      61 gaactatccc ataaatttgg aatacccaaa ctagtggcaa gacagatagt aaacacatgt 
     121 gcccaatgtc aacagaaagg ggargctata catgggcaag taaatgcaga attaggyacc 
     181 tggcaaatgg actgcacaca cttagaagga aagatcatta tagtrgcagt acatgttgcw 
     241 agtgggttta tagaagcaga agtcatccca caggaatcag gaaggcaaac rgcactcttc 
     301 ctrttaaaac tggccagcag gtggccaata acacacttac atacagataa tggtgccaac 
     361 ttcacctcac aggargtgaa gatggtagca tggtgggtag gcatagarca atcctttgga 
     421 gtaccttaca atccacaaag ccaaggagta gtagaagcaa tgaatcacca cctaaaaaat 
     481 cagataagca aaattagaga rcaggcaaat acaatagaaa caatagtatt aatggcagtt 
     541 cattgcatga attttaaaag aaggggagga ataggggata tgacaccagc agaaagayta 
     601 atcaatatga tcaccacaga acargaaata caattyctcc amgcaaaaaa ttcaaaattt 
     661 aaaaattttc aggtctatta cagagaaggc agagaccagc agtggaaagg ccctggggag 
     721 ctactgtgga agggagaagg cgcagtcata gtcaaggtag gggcagacat aaaaataata 
     781 ccaagaagaa aagccaagat catcaaggac tatggaggaa ggcaagagtt ggatagtggt 
     841 ycccacttgg agggtgccag ggaggatgga gaagtggcat ag
//
last modified: Tue May 31 10:56 2022


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