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LOCUS GU562070 4679 bp DNA linear VRL 06-APR-2010
DEFINITION HIV-1 isolate CQLDR03A7 from USA pol protein (pol) gene, partial
cds; and vif protein (vif), vpr protein (vpr), tat protein (tat),
rev protein (rev), vpu protein (vpu), envelope glycoprotein (env),
and nef protein (nef) genes, complete cds
ACCESSION GU562070
VERSION GU562070.1 GI:289068598
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 4679)
Show all sequences for reference 1
AUTHORS Bar,K.J., Li,H., Chamberland,A., Tremblay,C., Routy,J.P.,
Grayson,T., Sun,C., Wang,S., Learn,G.H., Morgan,C.J.,
Schumacher,J.E., Haynes,B.F., Keele,B.F., Hahn,B.H. and Shaw,G.M.
TITLE Wide variation in the multiplicity of HIV-1 infection among
injection drug users.
JOURNAL J. Virol.. 84(12); 6241-7 (2010)
PUBMED 20375173
REFERENCE 2 (bases 1 to 4679)
Show all sequences for reference 2
AUTHORS Learn,G.H.
TITLE Direct Submission
JOURNAL Submitted (14-JAN-2010) Medicine, University of Alabama at
Birmingham, 720 20th Street South, Kaul 806, Birmingham, AL 35294,
USA
COMMENT Annotation information was provided by the author. Some of the
information does not have GenBank feature identifiers and is being
provided in the comment section. Information in this section is
searchable in HIV Database at Los Alamos (www.hiv.lanl.gov).;
##HIVDataBaseData-START## Patient code CQLDR03 Sequence Name
CQLDR03A7 Subtype B Sample date 12/19/1997 Patient sex M Infection
country CA Fiebig Stage V DBID 282708705 ##HIVDataBaseData-END##
Sampling country is USA in GenBank accession records, but data from
the paper and authors clearly indicate these sequences were from a
Montreal, Canada cohort.
FEATURES Location/Qualifiers
source 1..4679
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="CQLDR03A7"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="USA: CA"
/collection_date="19-Dec-1997"
/note="subtype: B"
gene <1..129
/gene="pol"
CDS <1..129
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="ADC81736.1"
/db_xref="GI:289068599"
/translation="GAVVIQDSGDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED"
gene 74..652
/gene="vif"
CDS 74..652
/gene="vif"
/codon_start="1"
/transl_table="1"
/product="vif protein"
/protein_id="ADC81737.1"
/db_xref="GI:289068600"
/translation="MENRWQVMIVWQVDRMRIKAWKSLVKHHMYISGKAKKWIYRHHY
QSTHPRISSEVHIPLGDARLVITTYWGLHTGERDWHLGQGVSIEWRKRRYSTQVDPDL
ADRLIHLYYFDCFSESAIRNAILGRLVSPRCECQAGHNKVGSLQYLALTALVKPKKVK
PPLPSVRKLTEDRWNKPQKTKGHRGSHTMNGH"
gene 592..870
/gene="vpr"
CDS 592..870
/gene="vpr"
/codon_start="1"
/transl_table="1"
/product="vpr protein"
/protein_id="ADC81738.1"
/db_xref="GI:289068601"
/translation="MEQAPEDQGPQREPYNEWTLELLEELKSEAVRHFPRPWLHGLGQ
HIYETYGDTWRGVEALIRTLQQLLFIHFRIGCRHSRIGIIPRNGARRS"
gene 851..3513
/gene="tat"
CDS join(851..1065,3423..3513)
/gene="tat"
/codon_start="1"
/transl_table="1"
/product="tat protein"
/protein_id="ADC81739.1"
/db_xref="GI:289068602"
/translation="MEPVDPNLEPWKHPGSQPKTACTKCYCKKCCFHCQVCFITKGLG
ISYGRKKRRQRRGPPQGSQTHQVSLSKQPTSQPRGDPTGQKEQKKKVEKETETAPPD"
gene 990..3697
/gene="rev"
CDS join(990..1065,3423..3697)
/gene="rev"
/codon_start="1"
/transl_table="1"
/product="rev protein"
/protein_id="ADC81740.1"
/db_xref="GI:289068603"
/translation="MAGRSGDSDEDLLKAVRLIKFLYQSNPPPSPEGTRQARRNRRRR
WRRKQKQLHQISNWILTTHLGRPVQPVPLQLPPLERLTLDCSEGCGTSGTQGVGGNQV
LVESPAILDSGTKE"
gene 1082..1327
/gene="vpu"
CDS 1082..1327
/gene="vpu"
/codon_start="1"
/transl_table="1"
/product="vpu protein"
/protein_id="ADC81741.1"
/db_xref="GI:289068604"
/translation="MPSLYILTIVAFVVTVIIAIVVWTIVIIEYRKILRQRKIDRLID
RISERAEDSGNESEGDQEELSALVGMGHHAPWDVNDL"
gene 1245..3839
/gene="env"
CDS 1245..3839
/gene="env"
/codon_start="1"
/transl_table="1"
/product="envelope glycoprotein"
/protein_id="ADC81742.1"
/db_xref="GI:289068605"
/translation="MRVKEIRKNCQPLWGWGIMLLGMLMICSATKDLWVTVYYGVPVW
KEATTTLFCASDAKAYDTEVHNVWATHACVPTDPNPQEVFLKNVTEYFNMWKNNMVEQ
LHEDIISLWDQSLKPCVKLTPLCVTLHCTNLRNGTNLRNDSDNSTTPSPTTTSNITNI
EEGEITNCTFNVTTTIGNKMQKQYALFYRLDVQKIDDNGSYALINCNSSVITQACPKV
SFEPIPIHYCAPAGFAILKCKDKKFNGTGPCKNVSTVQCTHGIRPVVSTQLLLNGSLA
EEEVVIRSENLTNNAKTIIVQLNESVAINCTRPNNNTRKSIHIAPGSAFYATGAIIGD
IRQAHCNISRQQWNNTLEKIVTKLREQFVNKTIIFNQSSGGDPEIVMHNFNCGGEFFY
CNSTQLFNSTWFKNNTWIGSNGTENITLPCRIKQIINRWQEVGKAMYAPPISGVISCS
SNITGLILTRDGGRGDVNNTNETEIFRPGGGDMRDNWRSELYKYKVVKIEPLGIAPTK
AKRRVVQREKRAVTFGALFLGFLGAAGSTMGAASITLTAQARLLLSGIVQQQNNLLRA
IEAQQHLLQLTVWGIKQLQARVLAVERYLRDQQLLGIWGCSGKLICTTAVPWNASWSN
KSLEQIWDNMTWMEWEKEIDNYTGLIYTLIEESQNQQEKNEQELLALDKWASLWNWFD
ISNWLWYIKIFIMIVGGLVGLRVVFTVLSIVNRVRQGYSPLSFQTHLPAPRGPDRPEG
TEEEGGEGNRNSSTRLVTGFLPLIWDDLCSLCLFSYHHLRDLLLIVARVVELLGRRGW
EAIKYWWNLLQYWIQELKNSAVSLLNATAIAVAEGTDRVIEIVQNICRAILHIPRRIR
QGLERALL"
gene 3841..4470
/gene="nef"
CDS 3841..4470
/gene="nef"
/codon_start="1"
/transl_table="1"
/product="nef protein"
/protein_id="ADC81743.1"
/db_xref="GI:289068606"
/translation="MGGKWSKRMSGWAAVRERMRRAGPVAEPAADGVGAASRDLERHG
ALTSSNTVTNNAACAWLEAQEEEEVGFPVRPQVPLRPMTYKGALDLSHFLKETGGLEG
LIYSQRRQDILDLWVYHTQGYFPDWQNYTPGPGIRYPLTFGWCFKLVPLEPEKVEEAN
EGENNVLLHPMSQHGMDDPEKEVLVWKFDSRLAFHHMAREKHPEYYKDC"
BASE COUNT 1578 a 845 c 1142 g 1114 t
ORIGIN
1 ggggcagtag taatacaaga tagtggagac ataaaagtag tgccaagaag aaaagcaaag
61 atcattaggg attatggaaa acagatggca ggtgatgatt gtgtggcaag tagacaggat
121 gaggattaaa gcatggaaaa gtttagtaaa acaccatatg tatatttcag ggaaagctaa
181 gaaatggatt tataggcatc actatcaaag cactcatcca agaataagtt cagaagtaca
241 catcccacta ggggatgcta gactagtaat aacaacctat tggggtctgc atacaggaga
301 aagagactgg catttgggtc agggagtctc aatagaatgg aggaaaagga gatatagcac
361 ccaagtagac cctgacctag cagaccgact aattcacctg tactattttg attgtttttc
421 agaatctgct ataagaaatg ccatattagg acgtttagtt agtcctaggt gtgaatgtca
481 agcaggacat aacaaggtag gatctctaca gtacttggca ctaacagcat tagtgaaacc
541 aaaaaaggta aagccacctt tgcctagtgt taggaaacta acagaggata gatggaacaa
601 gccccagaag accaagggcc acagagggag ccatacaatg aatggacact agagctttta
661 gaggaactta agagtgaagc tgttagacat tttcctaggc catggctcca tggcttagga
721 caacatatct atgaaactta tggggacact tggagaggag tggaagcctt aataagaact
781 ctgcaacaac tgctgtttat tcatttcaga attggatgtc gacatagcag aataggcatt
841 attccaagga atggagcccg tagatcctaa cttagagccc tggaagcatc caggaagtca
901 gcctaagact gcttgtacca agtgctattg taaaaagtgt tgctttcatt gtcaagtttg
961 cttcataaca aaaggcttag gcatctccta tggcaggaag aagcggagac agcgacgagg
1021 acctcctcaa ggcagtcaga ctcatcaagt ttctctatca aagcagtaag tagtatatgt
1081 aatgccatct ttatacatat taacaatagt agcatttgta gtaacagtaa taatagcaat
1141 agttgtgtgg accatagtga tcatagaata taggaaaata ttaagacaaa gaaaaataga
1201 tagactaatt gatagaataa gtgaaagagc agaggacagt ggcaatgaga gtgaaggaga
1261 tcaggaagaa ttgtcagccc ttgtggggat ggggcatcat gctccttggg atgttaatga
1321 tctgtagtgc tacaaaagat ttatgggtca cagtctatta tggggtacct gtgtggaaag
1381 aagcaaccac cactctattt tgtgcatcag atgctaaagc atatgacaca gaggtacata
1441 atgtttgggc cacacatgcc tgtgtaccca cagaccctaa cccacaagaa gtattcttga
1501 aaaatgtgac agaatatttt aacatgtgga aaaataacat ggtagaacaa ctgcatgagg
1561 atataatcag tttatgggat caaagcctaa agccatgtgt gaaattaact ccactctgtg
1621 ttactttaca ctgcactaat ttgaggaatg gtactaattt gaggaatgat agtgataaca
1681 gtactactcc cagtcctaca actaccagta atataaccaa tatagaagaa ggggaaataa
1741 caaactgcac tttcaatgtc accacaacaa taggaaataa gatgcagaaa caatatgcac
1801 ttttttatag acttgatgta caaaaaatag atgataatgg tagctatgcg ttgataaatt
1861 gtaacagctc agtcattaca caggcctgtc caaaggtatc ctttgaacca attcccatac
1921 attattgtgc cccggctggt tttgcgattc taaagtgtaa ggataaaaag ttcaatggaa
1981 caggaccatg taaaaatgtc agcacagtgc aatgtactca tggaattaga ccagtagtgt
2041 caactcagct gctgttaaat ggcagtctgg cagaagaaga ggtagtgatt agatctgaaa
2101 atctcacgaa caatgctaaa accataatag tacagctgaa cgaatctgta gcaattaatt
2161 gtacaagacc caacaacaat acaagaaaaa gtatacacat agcaccaggg agcgcatttt
2221 atgcaacagg agctataata ggagatataa gacaagcaca ttgtaacatt agtagacaac
2281 aatggaataa cactttagaa aagatagtta caaaattaag agaacaattt gtgaataaaa
2341 caataatctt taatcaatcc tcaggagggg acccagaaat tgtaatgcac aattttaatt
2401 gtggagggga atttttctac tgtaattcaa cacagctgtt taatagtact tggtttaaga
2461 ataatacttg gatagggtca aatggcactg aaaatatcac actcccatgc agaataaaac
2521 aaattataaa caggtggcag gaagtaggaa aagcaatgta tgcccctccc atcagtggag
2581 taattagctg ttcatcaaat attacagggc tgatattaac aagagatggg ggaagaggtg
2641 atgttaataa caccaacgag actgagatct tcaggcctgg aggaggagat atgagggaca
2701 attggagaag tgaattatat aaatataaag tagtaaaaat tgagccatta ggaatagcac
2761 ccaccaaggc aaagagaaga gtggtgcaaa gagaaaaaag agcagtaacg tttggagctt
2821 tgttccttgg gttcttggga gcagcaggaa gcactatggg cgcagcgtca ataacgctga
2881 cggcacaggc cagactatta ttgtctggta tagtgcaaca gcagaacaat ttgctgagag
2941 ctattgaggc gcaacagcat ctgttgcaac tcacagtctg gggcatcaag cagctccagg
3001 caagagtcct ggctgtagaa agatacctac gggatcaaca gctcctgggg atttggggtt
3061 gctctggaaa actcatttgc accactgctg tgccttggaa tgctagttgg agtaataagt
3121 ctctagaaca aatttgggat aacatgacat ggatggagtg ggagaaggaa attgacaatt
3181 acacaggctt aatatacacc ttaattgaag aatcgcagaa ccaacaagaa aaaaatgaac
3241 aagaattatt ggcattggac aagtgggcaa gtttgtggaa ttggtttgac atatcaaact
3301 ggctgtggta tataaaaata ttcataatga tagtaggagg tttagtaggt ttaagagtag
3361 tttttactgt actttctata gtgaatagag ttaggcaggg atactcacca ttgtcatttc
3421 agacccacct cccagccccg aggggacccg acaggccaga aggaacagaa gaagaaggtg
3481 gagaaggaaa cagaaacagc tccaccagat tagtaactgg attcttacca ctcatctggg
3541 acgacctgtg cagcctgtgc ctcttcagct accaccactt gagagactta ctcttgattg
3601 tagcgagggt tgtggaactt ctgggacgca gggggtggga ggcaatcaag tattggtgga
3661 atctcctgca atactggatt caggaactaa agaatagtgc tgttagtttg cttaatgcca
3721 cagctatagc agtagctgag gggacagata gagttataga aatagtacaa aacatctgta
3781 gagctattct ccacatacct agaagaataa gacagggctt agaaagggct ttgctgtaag
3841 atgggtggca agtggtcaaa acgtatgagt ggatgggctg ctgtaaggga aagaatgaga
3901 cgagctggac cagtagctga gccagcagca gatggggtgg gagcagcatc tcgagacttg
3961 gaaagacatg gagcactcac aagcagcaat acagtaacta acaatgctgc ttgtgcctgg
4021 ctagaagcac aagaggagga agaagtgggt tttccagtca gacctcaggt acctttaaga
4081 ccaatgactt acaaaggagc tttagatctt agccactttt taaaagaaac ggggggactg
4141 gaagggctaa tttactccca aagaagacaa gacatccttg atctgtgggt ttatcacaca
4201 caaggctact tccctgattg gcagaactac acaccagggc cagggatcag atatccactg
4261 acctttgggt ggtgcttcaa gctagtacca ctcgagccag agaaggtaga ggaggccaat
4321 gaaggagaga acaacgtctt gttacaccct atgagccagc atgggatgga tgatccagag
4381 aaagaagtat tagtgtggaa gtttgacagc cgcctagcat ttcatcacat ggcccgagag
4441 aagcatccgg agtactacaa agactgctga cactgagcta tctacaaggg actttccgct
4501 ggggactttc cagggaggtg tggcctgggc gggaccgggg agtggcgagc cctcagatgc
4561 tgcatataag cagccgcttt ctgcctgtac tgggtctctc tggttagacc agatctgagc
4621 ctgggagctc tctggctagc tagggaaccc actgcttaag cctcaataaa gcttgcctt
//
last modified: Tue May 31 10:56 2022