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LOCUS GU562034 4663 bp DNA linear VRL 06-APR-2010
DEFINITION HIV-1 isolate ACTDM580208A17 from USA pol protein (pol) gene,
partial cds; vif protein (vif), vpr protein (vpr), tat protein
(tat), rev protein (rev), and vpu protein (vpu) genes, complete
cds; env pseudogene, complete sequence; and nef protein (nef) gene,
complete cds
ACCESSION GU562034
VERSION GU562034.1 GI:289068280
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 4663)
Show all sequences for reference 1
AUTHORS Bar,K.J., Li,H., Chamberland,A., Tremblay,C., Routy,J.P.,
Grayson,T., Sun,C., Wang,S., Learn,G.H., Morgan,C.J.,
Schumacher,J.E., Haynes,B.F., Keele,B.F., Hahn,B.H. and Shaw,G.M.
TITLE Wide variation in the multiplicity of HIV-1 infection among
injection drug users.
JOURNAL J. Virol.. 84(12); 6241-7 (2010)
PUBMED 20375173
REFERENCE 2 (bases 1 to 4663)
Show all sequences for reference 2
AUTHORS Learn,G.H.
TITLE Direct Submission
JOURNAL Submitted (14-JAN-2010) Medicine, University of Alabama at
Birmingham, 720 20th Street South, Kaul 806, Birmingham, AL 35294,
USA
COMMENT Annotation information was provided by the author. Some of the
information does not have GenBank feature identifiers and is being
provided in the comment section. Information in this section is
searchable in HIV Database at Los Alamos (www.hiv.lanl.gov).;
##HIVDataBaseData-START## Patient code ACTDM580208 Sequence Name
ACTDM580208A17 Subtype B Sample date 8/10/1997 Patient sex M
Infection country CA Fiebig Stage VI DBID 1651173780
##HIVDataBaseData-END## Sampling country is USA in GenBank
accession records, but data from the paper and authors clearly
indicate these sequences were from a Montreal, Canada cohort.
FEATURES Location/Qualifiers
source 1..4663
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="ACTDM580208A17"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="USA: CA"
/collection_date="10-Aug-1997"
/note="subtype: B"
gene <1..129
/gene="pol"
CDS <1..129
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="ADC81454.1"
/db_xref="GI:289068281"
/translation="GAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED"
gene 74..652
/gene="vif"
CDS 74..652
/gene="vif"
/codon_start="1"
/transl_table="1"
/product="vif protein"
/protein_id="ADC81455.1"
/db_xref="GI:289068282"
/translation="MENRWQVMIVWQVDRMKIKTWHSLVKHHMYISKKAKKWVYRHHY
ESTHPRISSEVHIPLEDAKLIIKTYWGLHTGEREWHLGQGVSIEWRKKRYCTQVDPGL
ADQLIHLHYFDCFSESAIRNAILGHRVSPRCEYQAGHNKVGSLQYLALTALITPKKIK
PPLPSVTKLTEDRWNKPQKTKGHRGNHTMSGH"
gene 592..879
/gene="vpr"
CDS 592..879
/gene="vpr"
/codon_start="1"
/transl_table="1"
/product="vpr protein"
/protein_id="ADC81456.1"
/db_xref="GI:289068283"
/translation="MEQAPEDQGPQREPYNEWTLELLEELKSEAVKHFPRPWLHSLGQ
YIYETYGDTWAGVEAIIRILQQLLFIHFRIGCQHSRIGIIRRSTRNGASRS"
gene 860..3507
/gene="tat"
CDS join(860..1074,3417..3507)
/gene="tat"
/codon_start="1"
/transl_table="1"
/product="tat protein"
/protein_id="ADC81457.1"
/db_xref="GI:289068284"
/translation="MEPVDPRLEPWNHPGSQPRTACNNCYCKKCCLHCQVCFTRKGLG
ISYGRKKRRQRRRAPQDHQTNQVSLPKQPASQPRGDPTGPKESKKKVERETETDPVD"
gene 999..3691
/gene="rev"
CDS join(999..1074,3417..3691)
/gene="rev"
/codon_start="1"
/transl_table="1"
/product="rev protein"
/protein_id="ADC81458.1"
/db_xref="GI:289068285"
/translation="MAGRSGDNDDELLKTIRLIKFLYQSNPLPSPEGTRQARRNRRRR
WRERQRQIRSISERILDTYLGRSVEPVLLQLPPLERLTLDCSEDCGTSGTQGVGSPQI
LVESPAVLEPGTKE"
gene 1091..1336
/gene="vpu"
CDS 1091..1336
/gene="vpu"
/codon_start="1"
/transl_table="1"
/product="vpu protein"
/protein_id="ADC81459.1"
/db_xref="GI:289068286"
/translation="MQPLQIAAIVALVVVTIIAIVVWSIVLIEYRKILRQRKIDRLID
RIRERAEDSGNESEGDQEELSALVEMGHHAPWDVDDL"
gene 1254..3833
/gene="env"
/pseudo="env"
CDS 1254..3833
/gene="env"
/pseudo="env"
/codon_start="1"
/transl_table="1"
gene 3835..4455
/gene="nef"
CDS 3835..4455
/gene="nef"
/codon_start="1"
/transl_table="1"
/product="nef protein"
/protein_id="ADC81460.1"
/db_xref="GI:289068287"
/translation="MGGKWSKSSLVGWPTVRERMKRAEPAAEGVGAVSQDLDKHGAIT
SNNTAATNVACAWLEAQEEEDVGFPVRPQVPLRPMTYKGALDLSHFLKEKGGLEGLIH
SQKRQDILDLWIYHTQGYFPDWQNYTPGPGVRFPLTFGWCFKLVPVDPGQVEEATARE
NTSLLHPISQHGIEDPEREVLMWKFDSRLAFHHMARELHPEYYKDC"
BASE COUNT 1616 a 819 c 1121 g 1107 t
ORIGIN
1 ggggcagtag taatacaaga taatagtgac ataaaagtag taccaaggag aaaagcaaag
61 atcattaggg attatggaaa acagatggca ggtgatgatt gtgtggcaag tagacaggat
121 gaagattaaa acatggcaca gtttagtaaa acaccatatg tatatttcaa agaaagctaa
181 gaaatgggtt tatagacatc actatgaaag cactcatcca agaataagtt cagaagtaca
241 catcccacta gaggatgcta aattgataat aaagacatat tggggtctgc atacaggaga
301 aagagaatgg catctgggcc agggagtctc catagaatgg agaaaaaaga gatattgcac
361 acaagtagac cctggccttg cagaccaact aattcatctg cattattttg attgtttttc
421 agaatctgct ataagaaatg ccatattagg acatagagtt agtcctaggt gtgaatatca
481 agcaggacat aacaaggtag gatctctaca atacctagca ctaacagcat taataacacc
541 aaaaaagata aagccacctc tgcctagtgt tacgaaacta acagaggata gatggaacaa
601 gccccagaag accaagggcc acagagggaa ccatacaatg agtggacact agagctttta
661 gaggagctta agagtgaagc tgttaaacat tttccgaggc catggctcca tagcttagga
721 caatatattt atgaaactta tggggatact tgggcaggag tggaagccat aataagaatt
781 ctgcaacaac tgctgtttat tcatttcaga attgggtgtc aacatagcag aataggcatt
841 attcggagga gcacaagaaa tggagccagt agatcctaga ctagaaccct ggaatcatcc
901 aggaagtcag cctaggactg cttgtaataa ttgctattgt aaaaagtgtt gccttcattg
961 ccaagtttgc ttcacacgaa aaggcttagg catctcctat ggcaggaaga agcggagaca
1021 acgacgacga gctcctcaag accatcagac taatcaagtt tctctaccaa agcagtaagt
1081 agtacatgta atgcaacctt tacaaatagc agcaatagta gcattagtag tagtaacaat
1141 aatagcaata gttgtgtgga gcatagtact catagaatat aggaaaatat taagacaaag
1201 gaaaatagac aggctaattg atagaataag agaaagagca gaagacagtg gcaatgaaag
1261 cgaaggggat caggaagaat tatcagcact tgtggagatg gggcatcatg ctccttggga
1321 tgttgatgat ctgtagtgct acagaaaaat tgtgggttac agtctattat ggggtacctg
1381 tgtggaaaga ggcaaccact actctatttt gtgcatcaga tgctaaagca tatgatacag
1441 aggtacataa tgtttgggcc acacatgcct gtgtgcccac agaccccaac ccacaagaag
1501 tagtattggg aaatgtgaca gaaaatttta acatgtggaa aaataacatg gtagaacaga
1561 tgcaggagga tataatcagt ttatgggatc aaagcctaaa accatgtgta aaattaaccc
1621 cactctgtgt taccttaagt tgcactgagg tgaggaaaga tactaatacc accaatagta
1681 gtttgggaat gatgaaggaa gaaatgaaaa actgctcttt caatatcacc acaagcataa
1741 aagataagat gaagaaagaa tatgcacttt tttatagact tgatgtagta ccaatagata
1801 atggtaataa taatattact aaaaataata ccaggtatag gttgataaat tgtaacacct
1861 cagtcattac acaggcctgt ccaaaggtat cctttgagcc aattcccata cattattgtg
1921 ccccagctgg ttttgcgatt ctaaagtgta acaataagac attcaatgga aaaggaccat
1981 gtacaaatgt aagcacagta caatgtacac atggaattag gccagtagtg tcaactcaac
2041 tgctgttaaa tggcagtcta gcagaagaag agacagtaat tagatccagc aatttctcgg
2101 acaatgccaa aaccataata gtacagctca ataattctgt agaaattaat tgtacaagac
2161 ccaacaacaa gacaagaaag agtataccta tgggaccagg gagagcattt tatgcaacag
2221 gagatataat aggagatata agacaagcac attgtaacct tagtagaaaa gaatggaata
2281 acactttaag caagatagtt ataaaattaa gagaacagtt tgggaataaa acaatagtct
2341 ttaagcaagc ctcaggaggg gacccagaaa ttgtaatgca cagttttaat tgtggagggg
2401 aatttttcta ctgtaattca acacaactgt ttaatagtac ttggaatgtt aatagtactt
2461 ggaatagtac tgaagagtca aatgacacta ttatactccc atgtaggata aaacaaatta
2521 taaacatgtg gcagaaagta ggaaaagcca tgtatgcccc tcccatcaga ggacaaatta
2581 aatgttcatc aaaaattaca gggatactat taacaagaga tggtggtaat agtggtaata
2641 acacgaatga gaccgaggtc ttcagacctg gaggaggaga tatgagggac aattggagaa
2701 gtgaattata taaatataaa gtagtaaaaa ttaaaccatt aggagtagca cccaccaagg
2761 caaagagaag agtggtgcag agagaaaaaa gagcagtggg aacaatagga gctatgttcc
2821 ttgggttctt gggagcagca ggaagcacta tgggcgcagc gtcaatgacg ctgacggtac
2881 aggccagaca attattgtct ggtatagtgc aacagcagaa caatttgctg agggctattg
2941 aggcgcaaca gcatctgttg caactcacag tctggggcat caagcagctc caggcaagac
3001 tcctggctgt ggaaagatac ctacaggatc aacagctcct agggatttgg ggttgctctg
3061 gaaaactcat ttgcaccact gctgtgcctt ggaatgatag ttggagtaat aaatctctgg
3121 ataagatttg gaataacatg acctggatgg agtgggatag agaaattaac aattacacaa
3181 gtttaatata taccttaatt gaaaaatcgc aaaaccaaca agaaaagaat gaacaagaat
3241 tattggaatt agataagtgg gcaagtttat ggaattggtt tgacataaca aactggttgt
3301 ggtatataaa aatattcata ataatagtag gaggcttggt aggtttaaga atagttttta
3361 ttgtactttc tatagtgaat agagttaggc agggatactc accattatca ttgcagaccc
3421 gcttcccagc cccgagggga cccgacaggc ccgaaggaat cgaagaagaa ggtggagaga
3481 gagacagaga cagatccggt cgattagtga acggattctt gacacttatc tgggacgatc
3541 tgtagagcct gtgcttcttc agctaccgcc gcttgagaga cttactcttg attgtagcga
3601 agattgtgga acttctggga cgcagggggt gggaagccct caaatattgg tggaatctcc
3661 tgcagtattg gagccaggaa ctaaagaata gtgctgttag cttgcttaat accataacta
3721 tagtagtagc tgagggaaca gataggatta tagaagtaat acaaagaact tgtagagcta
3781 ttctccacat acctacaaga ataagacagg gcttggaaag ggctttgcta taagatgggg
3841 ggcaagtggt caaaaagtag tctagttgga tggcctactg taagggaaag aatgaaacga
3901 gctgagccag cagcagaggg ggtgggagca gtatctcaag acctggataa acatggagca
3961 atcacaagta acaatacagc agctacaaat gttgcttgtg cctggctaga agcacaagag
4021 gaggaggacg tgggtttccc agtcagacct caggtacctt taagaccaat gacttacaag
4081 ggagctttag atcttagcca ctttttaaaa gaaaaggggg gactggaagg gctaattcac
4141 tcccagaaaa gacaagatat ccttgatctg tggatctatc acacacaagg ctacttccct
4201 gattggcaga actacacacc agggccaggg gtcagatttc cactgacctt tggatggtgc
4261 ttcaagttag taccagttga tccaggacag gtagaagagg ccactgcaag agagaacacc
4321 agcttgttac accctataag ccagcatggg atagaagacc cggagagaga agtgttaatg
4381 tggaagtttg acagccgcct agcctttcat cacatggccc gagagctgca tccggagtac
4441 tacaaagact gctgacatcg agcttctaca agggactttc cactggggac tttccaggga
4501 ggcgtggcct gggcgggact ggggagtggc gagccctcag atgctgcata taagcagctg
4561 ctttttgcct gtactgggtc tctctggtta gaccagattt gagcctggga gctctctggc
4621 taactaggga acccactgct taagcctcaa taaagcttgc ctt
//
last modified: Tue May 31 10:56 2022