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LOCUS	    GU562034		    4663 bp    DNA     linear	VRL 06-APR-2010
DEFINITION  HIV-1 isolate ACTDM580208A17 from USA pol protein (pol) gene,
	    partial cds; vif protein (vif), vpr protein (vpr), tat protein
	    (tat), rev protein (rev), and vpu protein (vpu) genes, complete
	    cds; env pseudogene, complete sequence; and nef protein (nef) gene,
	    complete cds
ACCESSION   GU562034
VERSION     GU562034.1 GI:289068280
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 4663)
            Show all sequences for reference 1
  AUTHORS   Bar,K.J., Li,H., Chamberland,A., Tremblay,C., Routy,J.P.,
	    Grayson,T., Sun,C., Wang,S., Learn,G.H., Morgan,C.J.,
	    Schumacher,J.E., Haynes,B.F., Keele,B.F., Hahn,B.H. and Shaw,G.M.
  TITLE     Wide variation in the multiplicity of HIV-1 infection among
	    injection drug users.
  JOURNAL   J. Virol.. 84(12); 6241-7 (2010)
  PUBMED    20375173
REFERENCE   2 (bases 1 to 4663)
            Show all sequences for reference 2
  AUTHORS   Learn,G.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (14-JAN-2010) Medicine, University of Alabama at
	    Birmingham, 720 20th Street South, Kaul 806, Birmingham, AL 35294,
	    USA
COMMENT     Annotation information was provided by the author. Some of the
	    information does not have GenBank feature identifiers and is being
	    provided in the comment section. Information in this section is
	    searchable in HIV Database at Los Alamos (www.hiv.lanl.gov).;
	    ##HIVDataBaseData-START## Patient code ACTDM580208 Sequence Name
	    ACTDM580208A17 Subtype B Sample date 8/10/1997 Patient sex M
	    Infection country CA Fiebig Stage VI DBID 1651173780
	    ##HIVDataBaseData-END## Sampling country is USA in GenBank
	    accession records, but data from the paper and authors clearly
	    indicate these sequences were from a Montreal, Canada cohort.
FEATURES             Location/Qualifiers
     source	     1..4663
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolate="ACTDM580208A17"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="USA: CA"
		     /collection_date="10-Aug-1997"
		     /note="subtype: B"
     gene	     <1..129
		     /gene="pol"
     CDS	     <1..129
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="ADC81454.1"
		     /db_xref="GI:289068281"
		     /translation="GAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED"
     gene	     74..652
		     /gene="vif"
     CDS	     74..652
		     /gene="vif"
		     /codon_start="1"
		     /transl_table="1"
		     /product="vif protein"
		     /protein_id="ADC81455.1"
		     /db_xref="GI:289068282"
		     /translation="MENRWQVMIVWQVDRMKIKTWHSLVKHHMYISKKAKKWVYRHHY
		     ESTHPRISSEVHIPLEDAKLIIKTYWGLHTGEREWHLGQGVSIEWRKKRYCTQVDPGL
		     ADQLIHLHYFDCFSESAIRNAILGHRVSPRCEYQAGHNKVGSLQYLALTALITPKKIK
		     PPLPSVTKLTEDRWNKPQKTKGHRGNHTMSGH"
     gene	     592..879
		     /gene="vpr"
     CDS	     592..879
		     /gene="vpr"
		     /codon_start="1"
		     /transl_table="1"
		     /product="vpr protein"
		     /protein_id="ADC81456.1"
		     /db_xref="GI:289068283"
		     /translation="MEQAPEDQGPQREPYNEWTLELLEELKSEAVKHFPRPWLHSLGQ
		     YIYETYGDTWAGVEAIIRILQQLLFIHFRIGCQHSRIGIIRRSTRNGASRS"
     gene	     860..3507
		     /gene="tat"
     CDS	     join(860..1074,3417..3507)
		     /gene="tat"
		     /codon_start="1"
		     /transl_table="1"
		     /product="tat protein"
		     /protein_id="ADC81457.1"
		     /db_xref="GI:289068284"
		     /translation="MEPVDPRLEPWNHPGSQPRTACNNCYCKKCCLHCQVCFTRKGLG
		     ISYGRKKRRQRRRAPQDHQTNQVSLPKQPASQPRGDPTGPKESKKKVERETETDPVD"
     gene	     999..3691
		     /gene="rev"
     CDS	     join(999..1074,3417..3691)
		     /gene="rev"
		     /codon_start="1"
		     /transl_table="1"
		     /product="rev protein"
		     /protein_id="ADC81458.1"
		     /db_xref="GI:289068285"
		     /translation="MAGRSGDNDDELLKTIRLIKFLYQSNPLPSPEGTRQARRNRRRR
		     WRERQRQIRSISERILDTYLGRSVEPVLLQLPPLERLTLDCSEDCGTSGTQGVGSPQI
		     LVESPAVLEPGTKE"
     gene	     1091..1336
		     /gene="vpu"
     CDS	     1091..1336
		     /gene="vpu"
		     /codon_start="1"
		     /transl_table="1"
		     /product="vpu protein"
		     /protein_id="ADC81459.1"
		     /db_xref="GI:289068286"
		     /translation="MQPLQIAAIVALVVVTIIAIVVWSIVLIEYRKILRQRKIDRLID
		     RIRERAEDSGNESEGDQEELSALVEMGHHAPWDVDDL"
     gene	     1254..3833
		     /gene="env"
		     /pseudo="env"
     CDS	     1254..3833
		     /gene="env"
		     /pseudo="env"
		     /codon_start="1"
		     /transl_table="1"
     gene	     3835..4455
		     /gene="nef"
     CDS	     3835..4455
		     /gene="nef"
		     /codon_start="1"
		     /transl_table="1"
		     /product="nef protein"
		     /protein_id="ADC81460.1"
		     /db_xref="GI:289068287"
		     /translation="MGGKWSKSSLVGWPTVRERMKRAEPAAEGVGAVSQDLDKHGAIT
		     SNNTAATNVACAWLEAQEEEDVGFPVRPQVPLRPMTYKGALDLSHFLKEKGGLEGLIH
		     SQKRQDILDLWIYHTQGYFPDWQNYTPGPGVRFPLTFGWCFKLVPVDPGQVEEATARE
		     NTSLLHPISQHGIEDPEREVLMWKFDSRLAFHHMARELHPEYYKDC"
BASE COUNT     1616 a	 819 c	 1121 g   1107 t
ORIGIN
       1 ggggcagtag taatacaaga taatagtgac ataaaagtag taccaaggag aaaagcaaag 
      61 atcattaggg attatggaaa acagatggca ggtgatgatt gtgtggcaag tagacaggat 
     121 gaagattaaa acatggcaca gtttagtaaa acaccatatg tatatttcaa agaaagctaa 
     181 gaaatgggtt tatagacatc actatgaaag cactcatcca agaataagtt cagaagtaca 
     241 catcccacta gaggatgcta aattgataat aaagacatat tggggtctgc atacaggaga 
     301 aagagaatgg catctgggcc agggagtctc catagaatgg agaaaaaaga gatattgcac 
     361 acaagtagac cctggccttg cagaccaact aattcatctg cattattttg attgtttttc 
     421 agaatctgct ataagaaatg ccatattagg acatagagtt agtcctaggt gtgaatatca 
     481 agcaggacat aacaaggtag gatctctaca atacctagca ctaacagcat taataacacc 
     541 aaaaaagata aagccacctc tgcctagtgt tacgaaacta acagaggata gatggaacaa 
     601 gccccagaag accaagggcc acagagggaa ccatacaatg agtggacact agagctttta 
     661 gaggagctta agagtgaagc tgttaaacat tttccgaggc catggctcca tagcttagga 
     721 caatatattt atgaaactta tggggatact tgggcaggag tggaagccat aataagaatt 
     781 ctgcaacaac tgctgtttat tcatttcaga attgggtgtc aacatagcag aataggcatt 
     841 attcggagga gcacaagaaa tggagccagt agatcctaga ctagaaccct ggaatcatcc 
     901 aggaagtcag cctaggactg cttgtaataa ttgctattgt aaaaagtgtt gccttcattg 
     961 ccaagtttgc ttcacacgaa aaggcttagg catctcctat ggcaggaaga agcggagaca 
    1021 acgacgacga gctcctcaag accatcagac taatcaagtt tctctaccaa agcagtaagt 
    1081 agtacatgta atgcaacctt tacaaatagc agcaatagta gcattagtag tagtaacaat 
    1141 aatagcaata gttgtgtgga gcatagtact catagaatat aggaaaatat taagacaaag 
    1201 gaaaatagac aggctaattg atagaataag agaaagagca gaagacagtg gcaatgaaag 
    1261 cgaaggggat caggaagaat tatcagcact tgtggagatg gggcatcatg ctccttggga 
    1321 tgttgatgat ctgtagtgct acagaaaaat tgtgggttac agtctattat ggggtacctg 
    1381 tgtggaaaga ggcaaccact actctatttt gtgcatcaga tgctaaagca tatgatacag 
    1441 aggtacataa tgtttgggcc acacatgcct gtgtgcccac agaccccaac ccacaagaag 
    1501 tagtattggg aaatgtgaca gaaaatttta acatgtggaa aaataacatg gtagaacaga 
    1561 tgcaggagga tataatcagt ttatgggatc aaagcctaaa accatgtgta aaattaaccc 
    1621 cactctgtgt taccttaagt tgcactgagg tgaggaaaga tactaatacc accaatagta 
    1681 gtttgggaat gatgaaggaa gaaatgaaaa actgctcttt caatatcacc acaagcataa 
    1741 aagataagat gaagaaagaa tatgcacttt tttatagact tgatgtagta ccaatagata 
    1801 atggtaataa taatattact aaaaataata ccaggtatag gttgataaat tgtaacacct 
    1861 cagtcattac acaggcctgt ccaaaggtat cctttgagcc aattcccata cattattgtg 
    1921 ccccagctgg ttttgcgatt ctaaagtgta acaataagac attcaatgga aaaggaccat 
    1981 gtacaaatgt aagcacagta caatgtacac atggaattag gccagtagtg tcaactcaac 
    2041 tgctgttaaa tggcagtcta gcagaagaag agacagtaat tagatccagc aatttctcgg 
    2101 acaatgccaa aaccataata gtacagctca ataattctgt agaaattaat tgtacaagac 
    2161 ccaacaacaa gacaagaaag agtataccta tgggaccagg gagagcattt tatgcaacag 
    2221 gagatataat aggagatata agacaagcac attgtaacct tagtagaaaa gaatggaata 
    2281 acactttaag caagatagtt ataaaattaa gagaacagtt tgggaataaa acaatagtct 
    2341 ttaagcaagc ctcaggaggg gacccagaaa ttgtaatgca cagttttaat tgtggagggg 
    2401 aatttttcta ctgtaattca acacaactgt ttaatagtac ttggaatgtt aatagtactt 
    2461 ggaatagtac tgaagagtca aatgacacta ttatactccc atgtaggata aaacaaatta 
    2521 taaacatgtg gcagaaagta ggaaaagcca tgtatgcccc tcccatcaga ggacaaatta 
    2581 aatgttcatc aaaaattaca gggatactat taacaagaga tggtggtaat agtggtaata 
    2641 acacgaatga gaccgaggtc ttcagacctg gaggaggaga tatgagggac aattggagaa 
    2701 gtgaattata taaatataaa gtagtaaaaa ttaaaccatt aggagtagca cccaccaagg 
    2761 caaagagaag agtggtgcag agagaaaaaa gagcagtggg aacaatagga gctatgttcc 
    2821 ttgggttctt gggagcagca ggaagcacta tgggcgcagc gtcaatgacg ctgacggtac 
    2881 aggccagaca attattgtct ggtatagtgc aacagcagaa caatttgctg agggctattg 
    2941 aggcgcaaca gcatctgttg caactcacag tctggggcat caagcagctc caggcaagac 
    3001 tcctggctgt ggaaagatac ctacaggatc aacagctcct agggatttgg ggttgctctg 
    3061 gaaaactcat ttgcaccact gctgtgcctt ggaatgatag ttggagtaat aaatctctgg 
    3121 ataagatttg gaataacatg acctggatgg agtgggatag agaaattaac aattacacaa 
    3181 gtttaatata taccttaatt gaaaaatcgc aaaaccaaca agaaaagaat gaacaagaat 
    3241 tattggaatt agataagtgg gcaagtttat ggaattggtt tgacataaca aactggttgt 
    3301 ggtatataaa aatattcata ataatagtag gaggcttggt aggtttaaga atagttttta 
    3361 ttgtactttc tatagtgaat agagttaggc agggatactc accattatca ttgcagaccc 
    3421 gcttcccagc cccgagggga cccgacaggc ccgaaggaat cgaagaagaa ggtggagaga 
    3481 gagacagaga cagatccggt cgattagtga acggattctt gacacttatc tgggacgatc 
    3541 tgtagagcct gtgcttcttc agctaccgcc gcttgagaga cttactcttg attgtagcga 
    3601 agattgtgga acttctggga cgcagggggt gggaagccct caaatattgg tggaatctcc 
    3661 tgcagtattg gagccaggaa ctaaagaata gtgctgttag cttgcttaat accataacta 
    3721 tagtagtagc tgagggaaca gataggatta tagaagtaat acaaagaact tgtagagcta 
    3781 ttctccacat acctacaaga ataagacagg gcttggaaag ggctttgcta taagatgggg 
    3841 ggcaagtggt caaaaagtag tctagttgga tggcctactg taagggaaag aatgaaacga 
    3901 gctgagccag cagcagaggg ggtgggagca gtatctcaag acctggataa acatggagca 
    3961 atcacaagta acaatacagc agctacaaat gttgcttgtg cctggctaga agcacaagag 
    4021 gaggaggacg tgggtttccc agtcagacct caggtacctt taagaccaat gacttacaag 
    4081 ggagctttag atcttagcca ctttttaaaa gaaaaggggg gactggaagg gctaattcac 
    4141 tcccagaaaa gacaagatat ccttgatctg tggatctatc acacacaagg ctacttccct 
    4201 gattggcaga actacacacc agggccaggg gtcagatttc cactgacctt tggatggtgc 
    4261 ttcaagttag taccagttga tccaggacag gtagaagagg ccactgcaag agagaacacc 
    4321 agcttgttac accctataag ccagcatggg atagaagacc cggagagaga agtgttaatg 
    4381 tggaagtttg acagccgcct agcctttcat cacatggccc gagagctgca tccggagtac 
    4441 tacaaagact gctgacatcg agcttctaca agggactttc cactggggac tttccaggga 
    4501 ggcgtggcct gggcgggact ggggagtggc gagccctcag atgctgcata taagcagctg 
    4561 ctttttgcct gtactgggtc tctctggtta gaccagattt gagcctggga gctctctggc 
    4621 taactaggga acccactgct taagcctcaa taaagcttgc ctt
//
last modified: Tue May 31 10:56 2022


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