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LOCUS	    GU562020		    4658 bp    DNA     linear	VRL 06-APR-2010
DEFINITION  HIV-1 isolate ACT54869022D2 from USA pol protein (pol) gene,
	    partial cds; vif protein (vif), vpr protein (vpr), tat protein
	    (tat), rev protein (rev), vpu protein (vpu), and envelope
	    glycoprotein (env) genes, complete cds; and nef pseudogene,
	    complete sequence
ACCESSION   GU562020
VERSION     GU562020.1 GI:289068164
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 4658)
            Show all sequences for reference 1
  AUTHORS   Bar,K.J., Li,H., Chamberland,A., Tremblay,C., Routy,J.P.,
	    Grayson,T., Sun,C., Wang,S., Learn,G.H., Morgan,C.J.,
	    Schumacher,J.E., Haynes,B.F., Keele,B.F., Hahn,B.H. and Shaw,G.M.
  TITLE     Wide variation in the multiplicity of HIV-1 infection among
	    injection drug users.
  JOURNAL   J. Virol.. 84(12); 6241-7 (2010)
  PUBMED    20375173
REFERENCE   2 (bases 1 to 4658)
            Show all sequences for reference 2
  AUTHORS   Learn,G.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (14-JAN-2010) Medicine, University of Alabama at
	    Birmingham, 720 20th Street South, Kaul 806, Birmingham, AL 35294,
	    USA
COMMENT     Annotation information was provided by the author. Some of the
	    information does not have GenBank feature identifiers and is being
	    provided in the comment section. Information in this section is
	    searchable in HIV Database at Los Alamos (www.hiv.lanl.gov).;
	    ##HIVDataBaseData-START## Patient code ACT54869022 Sequence Name
	    ACT54869022D2 Subtype B Sample date 8/31/1998 Patient sex M
	    Infection country CA Fiebig Stage VI DBID 3814077616
	    ##HIVDataBaseData-END## Sampling country is USA in GenBank
	    accession records, but data from the paper and authors clearly
	    indicate these sequences were from a Montreal, Canada cohort.
FEATURES             Location/Qualifiers
     source	     1..4658
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolate="ACT54869022D2"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="USA: CA"
		     /collection_date="31-Aug-1998"
		     /note="subtype: B"
     gene	     <1..129
		     /gene="pol"
     CDS	     <1..129
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="ADC81352.1"
		     /db_xref="GI:289068165"
		     /translation="GAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASGQNED"
     gene	     74..652
		     /gene="vif"
     CDS	     74..652
		     /gene="vif"
		     /codon_start="1"
		     /transl_table="1"
		     /product="vif protein"
		     /protein_id="ADC81353.1"
		     /db_xref="GI:289068166"
		     /translation="MENRWQVMIVWQVDRMRIRTWKSLVKHHIHISGKAKKWIYRHHY
		     ESTNPRISSEVHIPLGEAKLVVTTYWGLHTGERDWHLGQGVSIEWRKRSYNTQVDPDL
		     ADQLIHLYYFDCFSESAIRNAILENIVSPKCEYQAGHNKVGSLQYLALAALIKPKKTK
		     PPLPSVKKLTEDRWNKPQKTKGHKESHTMNGH"
     gene	     592..882
		     /gene="vpr"
     CDS	     592..882
		     /gene="vpr"
		     /codon_start="1"
		     /transl_table="1"
		     /product="vpr protein"
		     /protein_id="ADC81354.1"
		     /db_xref="GI:289068167"
		     /translation="MEQAPEDQGPQREPYNEWTLELLEELKNEAVRHFPRPWLYNLGQ
		     YIYETYGDTWAGVEAIIRILQQLLFIHFRIGCRHSRIGIIQQRRTRNGSSRS"
     gene	     863..3483
		     /gene="tat"
     CDS	     join(863..1077,3390..3483)
		     /gene="tat"
		     /codon_start="1"
		     /transl_table="1"
		     /product="tat protein"
		     /protein_id="ADC81355.1"
		     /db_xref="GI:289068168"
		     /translation="MDPVDPRLEPWKHPGSQPKTACNKCYCKKCCFHCQVCFIRKGLG
		     ISYGRKKRRQRRRAPQDSETHQVSLSKQPASQPRGDPTGPEEPKKKVETETEMDQVNQ
		     "
     gene	     1002..3664
		     /gene="rev"
     CDS	     join(1002..1077,3390..3664)
		     /gene="rev"
		     /codon_start="1"
		     /transl_table="1"
		     /product="rev protein"
		     /protein_id="ADC81356.1"
		     /db_xref="GI:289068169"
		     /translation="MAGRSGDSDEELLKTVRLIKFLYQSNPLPNPEGTRQARRNRRRR
		     WRQRQRWIRSISEWILHDHLGRSEEPVPLQLPPLERLTLDCSEDCGTSGTQGVGGPQV
		     LVESPAVLESGTKE"
     gene	     1094..1339
		     /gene="vpu"
     CDS	     1094..1339
		     /gene="vpu"
		     /codon_start="1"
		     /transl_table="1"
		     /product="vpu protein"
		     /protein_id="ADC81357.1"
		     /db_xref="GI:289068170"
		     /translation="MQSLTILAIVGLVVAAIIAIVVWSIVLIEYRKILKQRKIDRLID
		     RIRERAEDSGNESEGDQEELSALVERGHLAPWDVDDL"
     gene	     1257..3806
		     /gene="env"
     CDS	     1257..3806
		     /gene="env"
		     /codon_start="1"
		     /transl_table="1"
		     /product="envelope glycoprotein"
		     /protein_id="ADC81358.1"
		     /db_xref="GI:289068171"
		     /translation="MRVKGIRKNYQHWWRGGTLLLGMLMICSATGNLWVTVYYGVPVW
		     REATTTLFCASNAKAYDTEAHNIWATHACVPTDPDPKEIELTNVTEDFNAWKNDMVEQ
		     MHEDIISLWDQSLKSCVELTPLCVTLHCTNNVTINATIYNNSSGAGMKNCSFNITTNI
		     EDKVQKKHALFYELDIKQMDNTSYRLISCNTSKITQACPKISFEPIPIHYCAPAGFAI
		     LKCNDKKFNGTGPCGNVSTVQCTHGIRPVVSTQLLLNGSLAEEDVVIRSENITNNAKT
		     IIIQLKDPVEINCTRPNNNTRQGIHMGPGRSFYTAGAIIGDIRQAHCNISGEKWNNTL
		     QQIVKKLREIEQFKNKTIAFKNSSGGDIEIVTHSFNCGGEFFYCTTTQMFNSTWKDGT
		     WTEGSNNTGGNIILPCRIKQIINMWQKVGKAIYAPPISGQINCSSNITGLLLTRDGGN
		     EGNATNNTETFRPGGGDMRDNWRSELYKYKVVKIEPIGIAPTKAKRRVVQREKRAVGI
		     GAVFLGFLGAAGSTMGAASITLTVQARQLLSGIVQQQNNLLRAIEAQQHLLQLTVWGI
		     KQLQARVLAVERYLKDQQLLGIWGCSGKLICTTAVPWNTSWSNRTLSQIWENMTWMQW
		     EREIDNYTGLIYTLIEESQNQQEKNEQELLALDQWANLWSWFDITKWLWYIKIFIMIV
		     GGLVGLRIIFTVLSIVNRVRQGYSPLSLQTRFPTQRGPDRPGGTEEEGGDRDRDGSGQ
		     SVNGFFTIIWVDLRSLCLFSYHRLRDLLLIVARIVELLGRRGWGALKYWWNLLQYWSQ
		     ELKNSAVSLLNATAIAVAEGTDRIIEVVQRIGRAILHIPRRIRQGLERSLL"
     gene	     3808..4443
		     /gene="nef"
		     /pseudo="nef"
     CDS	     3808..4443
		     /gene="nef"
		     /pseudo="nef"
		     /codon_start="1"
		     /transl_table="1"
BASE COUNT     1606 a	 816 c	 1141 g   1095 t
ORIGIN
       1 ggggcagtag taatacaaga taatagtgac ataaaagtag taccaagaag gaaagcaaag 
      61 atcattaggg attatggaaa acagatggca ggtgatgatt gtgtggcaag tggacagaat 
     121 gaggattaga acatggaaaa gtttagtaaa acaccatata catatttcag ggaaagctaa 
     181 gaaatggatt tacagacatc actatgaaag cactaatcca agaataagtt cagaagtaca 
     241 catcccatta ggagaagcta aattggtagt aacaacatat tggggtctgc atacaggaga 
     301 aagagactgg catttgggtc agggagtctc catagaatgg aggaaaagaa gttataacac 
     361 acaagtagac cctgacctag cagaccaact aattcatctg tattactttg attgtttttc 
     421 agaatctgct ataagaaatg ccatattaga aaatatagtt agtcctaagt gtgaatatca 
     481 agcaggacat aacaaggtag gatctctaca gtacttggca ctagcagctt taataaaacc 
     541 aaaaaagaca aagccacctt tgcctagtgt taagaaactg acagaggaca gatggaacaa 
     601 gccccagaag accaagggcc acaaagagag ccatacaatg aatggacact agagctttta 
     661 gaggagctta agaatgaagc tgtgagacat tttcctaggc catggctcta taacttagga 
     721 caatatatct atgaaactta tggggatact tgggcaggag tggaagccat aataagaatt 
     781 ctgcaacaac tgctgtttat tcatttcaga attgggtgtc gacatagcag aataggcatt 
     841 attcaacaga ggagaacaag aaatggatcc agtagatcct agactagagc cctggaagca 
     901 tccaggaagt cagcctaaga ctgcttgtaa caaatgctat tgtaaaaagt gttgctttca 
     961 ttgccaagtt tgcttcatac gcaaaggctt aggcatctcc tatggcagga agaagcggag 
    1021 acagcgacga agagctcctc aagacagtga gactcatcaa gtttctctat caaagcagta 
    1081 agtaatacat gtgatgcaat ctttaacaat attagcaata gtaggcttag tagtagcagc 
    1141 aataatagca atagttgtgt ggtccatagt acttatagaa tataggaaaa tattaaaaca 
    1201 aaggaaaata gacaggttaa ttgatagaat aagagaaaga gcagaagaca gtggcaatga 
    1261 gagtgaaggg gatcaggaag aattatcagc actggtggag agggggcacc ttgctccttg 
    1321 ggatgttgat gatctgtagt gctacaggaa atttgtgggt cacagtctat tatggggtac 
    1381 ctgtgtggag agaagcaacc accactctat tttgtgcatc aaatgctaaa gcatatgata 
    1441 cagaggcaca taatatttgg gccacacatg cctgtgtacc cacagacccc gacccaaaag 
    1501 aaattgaatt gacaaatgtg acagaagatt ttaatgcgtg gaaaaatgac atggtagaac 
    1561 aaatgcatga ggatataatt agtttatggg atcaaagcct aaagtcatgt gtagaattaa 
    1621 ccccactctg tgttacctta cattgcacta ataatgttac tatcaatgct actatctata 
    1681 ataatagtag tggggcggga atgaagaact gctctttcaa tatcaccaca aacatagaag 
    1741 ataaggtgca gaaaaaacat gcactgtttt atgaacttga tataaaacag atggataata 
    1801 ctagttatag gttgataagt tgtaacacct caaaaattac acaggcctgt ccaaagatat 
    1861 cctttgagcc aattcctata cattattgcg ccccggctgg ttttgcgatt ctaaagtgta 
    1921 atgataaaaa gttcaatgga acaggaccat gtggaaatgt cagcacagta caatgtacac 
    1981 atggaattag gccagtagta tcaactcaac tgctgttaaa tggcagtcta gcagaagaag 
    2041 atgtagtaat tagatctgaa aacatcacaa acaatgctaa aaccataata atacagctga 
    2101 aagaccctgt agaaattaat tgtacaagac ccaacaacaa tacaagacaa ggtatacata 
    2161 tgggaccagg gagatcattt tatacagcag gagcaataat aggagatata agacaagcac 
    2221 attgtaacat tagtggagaa aaatggaata acactttaca acagatagtc aagaaattaa 
    2281 gagaaattga gcaatttaaa aataaaacaa tagcctttaa gaattcctca ggaggagata 
    2341 tagaaattgt aacacacagt tttaattgtg gaggggaatt tttctactgt actacaacac 
    2401 agatgtttaa tagtacttgg aaggatggta cttggactga aggatcaaat aacactggcg 
    2461 gaaatatcat actcccatgc agaataaaac aaattataaa catgtggcag aaagtaggaa 
    2521 aagcaatata tgcccctccc attagtggac aaattaactg ttcatcaaat attacagggc 
    2581 tgctattaac aagagatggt ggtaacgagg gcaatgctac taataatact gaaaccttca 
    2641 gacctggtgg aggagatatg agggacaatt ggagaagtga attatataaa tataaagtag 
    2701 taaaaattga accaatagga atagcaccca ccaaggcaaa gagaagagtg gtgcagagag 
    2761 aaaaaagagc agtgggaata ggagctgtgt tccttgggtt cttgggagca gcaggaagca 
    2821 ctatgggcgc agcgtcaata acgctgacgg tacaggccag acaattattg tctggtatag 
    2881 tgcaacagca gaacaatttg ctgagggcta ttgaggcgca acagcacctg ttgcaactca 
    2941 cagtctgggg catcaagcag ctccaggcaa gagtcctggc tgtggaaaga tacctaaagg 
    3001 atcaacagct cctggggatt tggggttgct ctggaaaact catctgcacc actgctgtgc 
    3061 cttggaatac tagttggagt aatagaactc tgtctcagat ttgggagaac atgacctgga 
    3121 tgcaatggga aagagaaatt gacaattaca caggcttaat atacacttta attgaagaat 
    3181 cgcagaacca gcaagaaaag aacgaacaag aattattggc attggatcag tgggcaaatt 
    3241 tgtggagttg gtttgacata acaaaatggc tgtggtatat aaaaatattc ataatgatag 
    3301 taggaggctt ggtaggttta aggataattt ttactgtact ttctatagta aatagagtta 
    3361 ggcagggata ctcaccatta tcgttgcaga cccgcttccc aacccagagg ggacccgaca 
    3421 ggcccggagg aaccgaagaa gaaggtggag acagagacag agatggatca ggtcaatcag 
    3481 tgaatggatt cttcacgatc atctgggtcg atctgaggag cctgtgcctc ttcagctacc 
    3541 accgcttgag agacttactc ttgattgtag cgaggattgt ggaacttctg ggacgcaggg 
    3601 ggtggggggc cctcaagtat tggtggaatc tcctgcagta ttggagtcag gaactaaaga 
    3661 atagtgctgt tagtttgctt aatgctacag ctatagcagt agctgagggg acagatagaa 
    3721 ttatagaagt agtacaaaga attggtagag ctattctcca catacctaga agaataagac 
    3781 agggcttaga aaggagcttg ctataagatg ggtggcatat ggtcaaaacg tagtgggggt 
    3841 ggatggtctg ccgtaaggga aagaatgaga agaactgatc caaggcaaac tgaaccagca 
    3901 gcagaagggg tgggagcagt atctcgagac ttagaaagac atggtgcaat cacaagtagc 
    3961 aatacagcgg ctaacaatgc cgcttgtgcc tggctagaag cacaagagga agaggaggtg 
    4021 ggatttccag tcagacctca ggtcccttta agaccaatga cttacaaggc agctctcgat 
    4081 ttgagccact ttttaaaaga aaagggggga ctggaagggc taattcactc ccaaagaaga 
    4141 caagacatcc ttgatatgtg gatctaccac acacaaggct atttccctga ttggcagaac 
    4201 tacacaccag ggccagggat cagatttcca ctgtgctttg gatggtgctt caaactagta 
    4261 ccagttgagc cagagaagat agaagaggcc aatacaggag agaacaacag cttgttacac 
    4321 cctatgagcc agcatggaat ggatgaccca gagaaagaag tgttaatgtg gaagtttgac 
    4381 agcagactag cattccatca cgtggcccga gagctgcatc cggagtacta caagaactga 
    4441 tgactcaagt gttctacaag ggactttccg ctggggactt tccagggagg tgtggcggga 
    4501 ggtatggcct gggcgggact ggggagtggc gagccctcag atgctgcata taagcagctg 
    4561 ctttctgcct gtactgggtc tctcttgtta gaccagatct gagcctggga gctctctggc 
    4621 taactaggga acccactgct taagcctcaa taaagctt
//
last modified: Tue May 31 10:56 2022


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