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LOCUS GU562020 4658 bp DNA linear VRL 06-APR-2010
DEFINITION HIV-1 isolate ACT54869022D2 from USA pol protein (pol) gene,
partial cds; vif protein (vif), vpr protein (vpr), tat protein
(tat), rev protein (rev), vpu protein (vpu), and envelope
glycoprotein (env) genes, complete cds; and nef pseudogene,
complete sequence
ACCESSION GU562020
VERSION GU562020.1 GI:289068164
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 4658)
Show all sequences for reference 1
AUTHORS Bar,K.J., Li,H., Chamberland,A., Tremblay,C., Routy,J.P.,
Grayson,T., Sun,C., Wang,S., Learn,G.H., Morgan,C.J.,
Schumacher,J.E., Haynes,B.F., Keele,B.F., Hahn,B.H. and Shaw,G.M.
TITLE Wide variation in the multiplicity of HIV-1 infection among
injection drug users.
JOURNAL J. Virol.. 84(12); 6241-7 (2010)
PUBMED 20375173
REFERENCE 2 (bases 1 to 4658)
Show all sequences for reference 2
AUTHORS Learn,G.H.
TITLE Direct Submission
JOURNAL Submitted (14-JAN-2010) Medicine, University of Alabama at
Birmingham, 720 20th Street South, Kaul 806, Birmingham, AL 35294,
USA
COMMENT Annotation information was provided by the author. Some of the
information does not have GenBank feature identifiers and is being
provided in the comment section. Information in this section is
searchable in HIV Database at Los Alamos (www.hiv.lanl.gov).;
##HIVDataBaseData-START## Patient code ACT54869022 Sequence Name
ACT54869022D2 Subtype B Sample date 8/31/1998 Patient sex M
Infection country CA Fiebig Stage VI DBID 3814077616
##HIVDataBaseData-END## Sampling country is USA in GenBank
accession records, but data from the paper and authors clearly
indicate these sequences were from a Montreal, Canada cohort.
FEATURES Location/Qualifiers
source 1..4658
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="ACT54869022D2"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="USA: CA"
/collection_date="31-Aug-1998"
/note="subtype: B"
gene <1..129
/gene="pol"
CDS <1..129
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="ADC81352.1"
/db_xref="GI:289068165"
/translation="GAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASGQNED"
gene 74..652
/gene="vif"
CDS 74..652
/gene="vif"
/codon_start="1"
/transl_table="1"
/product="vif protein"
/protein_id="ADC81353.1"
/db_xref="GI:289068166"
/translation="MENRWQVMIVWQVDRMRIRTWKSLVKHHIHISGKAKKWIYRHHY
ESTNPRISSEVHIPLGEAKLVVTTYWGLHTGERDWHLGQGVSIEWRKRSYNTQVDPDL
ADQLIHLYYFDCFSESAIRNAILENIVSPKCEYQAGHNKVGSLQYLALAALIKPKKTK
PPLPSVKKLTEDRWNKPQKTKGHKESHTMNGH"
gene 592..882
/gene="vpr"
CDS 592..882
/gene="vpr"
/codon_start="1"
/transl_table="1"
/product="vpr protein"
/protein_id="ADC81354.1"
/db_xref="GI:289068167"
/translation="MEQAPEDQGPQREPYNEWTLELLEELKNEAVRHFPRPWLYNLGQ
YIYETYGDTWAGVEAIIRILQQLLFIHFRIGCRHSRIGIIQQRRTRNGSSRS"
gene 863..3483
/gene="tat"
CDS join(863..1077,3390..3483)
/gene="tat"
/codon_start="1"
/transl_table="1"
/product="tat protein"
/protein_id="ADC81355.1"
/db_xref="GI:289068168"
/translation="MDPVDPRLEPWKHPGSQPKTACNKCYCKKCCFHCQVCFIRKGLG
ISYGRKKRRQRRRAPQDSETHQVSLSKQPASQPRGDPTGPEEPKKKVETETEMDQVNQ
"
gene 1002..3664
/gene="rev"
CDS join(1002..1077,3390..3664)
/gene="rev"
/codon_start="1"
/transl_table="1"
/product="rev protein"
/protein_id="ADC81356.1"
/db_xref="GI:289068169"
/translation="MAGRSGDSDEELLKTVRLIKFLYQSNPLPNPEGTRQARRNRRRR
WRQRQRWIRSISEWILHDHLGRSEEPVPLQLPPLERLTLDCSEDCGTSGTQGVGGPQV
LVESPAVLESGTKE"
gene 1094..1339
/gene="vpu"
CDS 1094..1339
/gene="vpu"
/codon_start="1"
/transl_table="1"
/product="vpu protein"
/protein_id="ADC81357.1"
/db_xref="GI:289068170"
/translation="MQSLTILAIVGLVVAAIIAIVVWSIVLIEYRKILKQRKIDRLID
RIRERAEDSGNESEGDQEELSALVERGHLAPWDVDDL"
gene 1257..3806
/gene="env"
CDS 1257..3806
/gene="env"
/codon_start="1"
/transl_table="1"
/product="envelope glycoprotein"
/protein_id="ADC81358.1"
/db_xref="GI:289068171"
/translation="MRVKGIRKNYQHWWRGGTLLLGMLMICSATGNLWVTVYYGVPVW
REATTTLFCASNAKAYDTEAHNIWATHACVPTDPDPKEIELTNVTEDFNAWKNDMVEQ
MHEDIISLWDQSLKSCVELTPLCVTLHCTNNVTINATIYNNSSGAGMKNCSFNITTNI
EDKVQKKHALFYELDIKQMDNTSYRLISCNTSKITQACPKISFEPIPIHYCAPAGFAI
LKCNDKKFNGTGPCGNVSTVQCTHGIRPVVSTQLLLNGSLAEEDVVIRSENITNNAKT
IIIQLKDPVEINCTRPNNNTRQGIHMGPGRSFYTAGAIIGDIRQAHCNISGEKWNNTL
QQIVKKLREIEQFKNKTIAFKNSSGGDIEIVTHSFNCGGEFFYCTTTQMFNSTWKDGT
WTEGSNNTGGNIILPCRIKQIINMWQKVGKAIYAPPISGQINCSSNITGLLLTRDGGN
EGNATNNTETFRPGGGDMRDNWRSELYKYKVVKIEPIGIAPTKAKRRVVQREKRAVGI
GAVFLGFLGAAGSTMGAASITLTVQARQLLSGIVQQQNNLLRAIEAQQHLLQLTVWGI
KQLQARVLAVERYLKDQQLLGIWGCSGKLICTTAVPWNTSWSNRTLSQIWENMTWMQW
EREIDNYTGLIYTLIEESQNQQEKNEQELLALDQWANLWSWFDITKWLWYIKIFIMIV
GGLVGLRIIFTVLSIVNRVRQGYSPLSLQTRFPTQRGPDRPGGTEEEGGDRDRDGSGQ
SVNGFFTIIWVDLRSLCLFSYHRLRDLLLIVARIVELLGRRGWGALKYWWNLLQYWSQ
ELKNSAVSLLNATAIAVAEGTDRIIEVVQRIGRAILHIPRRIRQGLERSLL"
gene 3808..4443
/gene="nef"
/pseudo="nef"
CDS 3808..4443
/gene="nef"
/pseudo="nef"
/codon_start="1"
/transl_table="1"
BASE COUNT 1606 a 816 c 1141 g 1095 t
ORIGIN
1 ggggcagtag taatacaaga taatagtgac ataaaagtag taccaagaag gaaagcaaag
61 atcattaggg attatggaaa acagatggca ggtgatgatt gtgtggcaag tggacagaat
121 gaggattaga acatggaaaa gtttagtaaa acaccatata catatttcag ggaaagctaa
181 gaaatggatt tacagacatc actatgaaag cactaatcca agaataagtt cagaagtaca
241 catcccatta ggagaagcta aattggtagt aacaacatat tggggtctgc atacaggaga
301 aagagactgg catttgggtc agggagtctc catagaatgg aggaaaagaa gttataacac
361 acaagtagac cctgacctag cagaccaact aattcatctg tattactttg attgtttttc
421 agaatctgct ataagaaatg ccatattaga aaatatagtt agtcctaagt gtgaatatca
481 agcaggacat aacaaggtag gatctctaca gtacttggca ctagcagctt taataaaacc
541 aaaaaagaca aagccacctt tgcctagtgt taagaaactg acagaggaca gatggaacaa
601 gccccagaag accaagggcc acaaagagag ccatacaatg aatggacact agagctttta
661 gaggagctta agaatgaagc tgtgagacat tttcctaggc catggctcta taacttagga
721 caatatatct atgaaactta tggggatact tgggcaggag tggaagccat aataagaatt
781 ctgcaacaac tgctgtttat tcatttcaga attgggtgtc gacatagcag aataggcatt
841 attcaacaga ggagaacaag aaatggatcc agtagatcct agactagagc cctggaagca
901 tccaggaagt cagcctaaga ctgcttgtaa caaatgctat tgtaaaaagt gttgctttca
961 ttgccaagtt tgcttcatac gcaaaggctt aggcatctcc tatggcagga agaagcggag
1021 acagcgacga agagctcctc aagacagtga gactcatcaa gtttctctat caaagcagta
1081 agtaatacat gtgatgcaat ctttaacaat attagcaata gtaggcttag tagtagcagc
1141 aataatagca atagttgtgt ggtccatagt acttatagaa tataggaaaa tattaaaaca
1201 aaggaaaata gacaggttaa ttgatagaat aagagaaaga gcagaagaca gtggcaatga
1261 gagtgaaggg gatcaggaag aattatcagc actggtggag agggggcacc ttgctccttg
1321 ggatgttgat gatctgtagt gctacaggaa atttgtgggt cacagtctat tatggggtac
1381 ctgtgtggag agaagcaacc accactctat tttgtgcatc aaatgctaaa gcatatgata
1441 cagaggcaca taatatttgg gccacacatg cctgtgtacc cacagacccc gacccaaaag
1501 aaattgaatt gacaaatgtg acagaagatt ttaatgcgtg gaaaaatgac atggtagaac
1561 aaatgcatga ggatataatt agtttatggg atcaaagcct aaagtcatgt gtagaattaa
1621 ccccactctg tgttacctta cattgcacta ataatgttac tatcaatgct actatctata
1681 ataatagtag tggggcggga atgaagaact gctctttcaa tatcaccaca aacatagaag
1741 ataaggtgca gaaaaaacat gcactgtttt atgaacttga tataaaacag atggataata
1801 ctagttatag gttgataagt tgtaacacct caaaaattac acaggcctgt ccaaagatat
1861 cctttgagcc aattcctata cattattgcg ccccggctgg ttttgcgatt ctaaagtgta
1921 atgataaaaa gttcaatgga acaggaccat gtggaaatgt cagcacagta caatgtacac
1981 atggaattag gccagtagta tcaactcaac tgctgttaaa tggcagtcta gcagaagaag
2041 atgtagtaat tagatctgaa aacatcacaa acaatgctaa aaccataata atacagctga
2101 aagaccctgt agaaattaat tgtacaagac ccaacaacaa tacaagacaa ggtatacata
2161 tgggaccagg gagatcattt tatacagcag gagcaataat aggagatata agacaagcac
2221 attgtaacat tagtggagaa aaatggaata acactttaca acagatagtc aagaaattaa
2281 gagaaattga gcaatttaaa aataaaacaa tagcctttaa gaattcctca ggaggagata
2341 tagaaattgt aacacacagt tttaattgtg gaggggaatt tttctactgt actacaacac
2401 agatgtttaa tagtacttgg aaggatggta cttggactga aggatcaaat aacactggcg
2461 gaaatatcat actcccatgc agaataaaac aaattataaa catgtggcag aaagtaggaa
2521 aagcaatata tgcccctccc attagtggac aaattaactg ttcatcaaat attacagggc
2581 tgctattaac aagagatggt ggtaacgagg gcaatgctac taataatact gaaaccttca
2641 gacctggtgg aggagatatg agggacaatt ggagaagtga attatataaa tataaagtag
2701 taaaaattga accaatagga atagcaccca ccaaggcaaa gagaagagtg gtgcagagag
2761 aaaaaagagc agtgggaata ggagctgtgt tccttgggtt cttgggagca gcaggaagca
2821 ctatgggcgc agcgtcaata acgctgacgg tacaggccag acaattattg tctggtatag
2881 tgcaacagca gaacaatttg ctgagggcta ttgaggcgca acagcacctg ttgcaactca
2941 cagtctgggg catcaagcag ctccaggcaa gagtcctggc tgtggaaaga tacctaaagg
3001 atcaacagct cctggggatt tggggttgct ctggaaaact catctgcacc actgctgtgc
3061 cttggaatac tagttggagt aatagaactc tgtctcagat ttgggagaac atgacctgga
3121 tgcaatggga aagagaaatt gacaattaca caggcttaat atacacttta attgaagaat
3181 cgcagaacca gcaagaaaag aacgaacaag aattattggc attggatcag tgggcaaatt
3241 tgtggagttg gtttgacata acaaaatggc tgtggtatat aaaaatattc ataatgatag
3301 taggaggctt ggtaggttta aggataattt ttactgtact ttctatagta aatagagtta
3361 ggcagggata ctcaccatta tcgttgcaga cccgcttccc aacccagagg ggacccgaca
3421 ggcccggagg aaccgaagaa gaaggtggag acagagacag agatggatca ggtcaatcag
3481 tgaatggatt cttcacgatc atctgggtcg atctgaggag cctgtgcctc ttcagctacc
3541 accgcttgag agacttactc ttgattgtag cgaggattgt ggaacttctg ggacgcaggg
3601 ggtggggggc cctcaagtat tggtggaatc tcctgcagta ttggagtcag gaactaaaga
3661 atagtgctgt tagtttgctt aatgctacag ctatagcagt agctgagggg acagatagaa
3721 ttatagaagt agtacaaaga attggtagag ctattctcca catacctaga agaataagac
3781 agggcttaga aaggagcttg ctataagatg ggtggcatat ggtcaaaacg tagtgggggt
3841 ggatggtctg ccgtaaggga aagaatgaga agaactgatc caaggcaaac tgaaccagca
3901 gcagaagggg tgggagcagt atctcgagac ttagaaagac atggtgcaat cacaagtagc
3961 aatacagcgg ctaacaatgc cgcttgtgcc tggctagaag cacaagagga agaggaggtg
4021 ggatttccag tcagacctca ggtcccttta agaccaatga cttacaaggc agctctcgat
4081 ttgagccact ttttaaaaga aaagggggga ctggaagggc taattcactc ccaaagaaga
4141 caagacatcc ttgatatgtg gatctaccac acacaaggct atttccctga ttggcagaac
4201 tacacaccag ggccagggat cagatttcca ctgtgctttg gatggtgctt caaactagta
4261 ccagttgagc cagagaagat agaagaggcc aatacaggag agaacaacag cttgttacac
4321 cctatgagcc agcatggaat ggatgaccca gagaaagaag tgttaatgtg gaagtttgac
4381 agcagactag cattccatca cgtggcccga gagctgcatc cggagtacta caagaactga
4441 tgactcaagt gttctacaag ggactttccg ctggggactt tccagggagg tgtggcggga
4501 ggtatggcct gggcgggact ggggagtggc gagccctcag atgctgcata taagcagctg
4561 ctttctgcct gtactgggtc tctcttgtta gaccagatct gagcctggga gctctctggc
4621 taactaggga acccactgct taagcctcaa taaagctt
//
last modified: Tue May 31 10:56 2022