HIV Databases HIV Databases home HIV Databases home
HIV Sequence Database



Download: ENTIRE SEQUENCE SEQUENCE FRAGMENT start end
Format:  
View NCBI entry		Download GenBank file		Graphics View		Download GFF3 File

LOCUS	    GU471370		     346 bp    RNA     linear	VRL 19-JUL-2010
DEFINITION  HIV-1 isolate ZPHI41-11 from Switzerland envelope glycoprotein
	    (env) gene, partial cds
ACCESSION   GU471370
VERSION     GU471370.1 GI:300510206
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 346)
            Show all sequences for reference 1
  AUTHORS   Rieder,P., Joos,B., von Wyl,V., Kuster,H., Grube,C., Leemann,C.,
	    Boni,J., Yerly,S., Klimkait,T., Burgisser,P., Weber,R., Fischer,M.
	    and Gunthard,H.F.
  CONSRTM   Swiss HIV Cohort Study
  TITLE     HIV-1 transmission after cessation of early antiretroviral therapy
	    among men having sex with men
  JOURNAL   AIDS 24 (8), 1177-1183 (2010)
  PUBMED    20386427
REFERENCE   2 (bases 1 to 346)
            Show all sequences for reference 2
  AUTHORS   Joos,B.
  CONSRTM   Swiss HIV Cohort Study
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JAN-2010) Infectious Diseases, University Hospital
	    Zurich, Ramistr. 100, Zurich CH-8091, Switzerland
FEATURES             Location/Qualifiers
     source	     1..346
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="ZPHI41-11"
		     /isolation_source="patient ZPHI41 2003-12-12 plasma"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="Switzerland"
		     /collection_date="12-Dec-2003"
		     /note="subtype: B"
     gene	     <1..>346
		     /gene="env"
     CDS	     <1..>346
		     /gene="env"
		     /note="gp120; C2-V3-C3 region"
		     /codon_start="3"
		     /transl_table="1"
		     /product="envelope glycoprotein"
		     /protein_id="ADK24368.1"
		     /db_xref="GI:300510207"
		     /translation="THGIRPVVSTQLLLNGSLAEEEVIIRSENFTDNIKNIIVQLKHS
		     VKINCTRPGNNTRKSIHIGPGRAFFARGDITGDIRKAYCNISGTDWNSTLSQTVTALR
		     KQFGNKTIVFKPP"
BASE COUNT	146 a	  53 c	   67 g     80 t
ORIGIN
       1 gtacacatgg aattaggcca gtagtgtcaa ctcaactgct gttaaatggc agtctggcag 
      61 aagaagaggt aataattaga tctgaaaatt tcacagacaa tattaaaaac ataatagtac 
     121 agctaaaaca ctctgtaaaa attaattgca caagacccgg taacaataca aggaaaagta 
     181 tacatatagg accagggaga gcattttttg caagaggaga tataacagga gatataagaa 
     241 aagcatattg taacattagt ggaacagatt ggaatagcac tttaagccag acagttacag 
     301 cattaagaaa acaatttggg aacaaaacaa tagtctttaa acctcc
//
last modified: Tue May 31 10:56 2022


Questions or comments? Contact us at seq-info@lanl.gov.

 
Operated by Triad National Security, LLC for the U.S. Department of Energy's National Nuclear Security Administration
© Copyright Triad National Security, LLC. All Rights Reserved | Disclaimer/Privacy

Dept of Health & Human Services Los Alamos National Institutes of Health