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LOCUS GU330313 2625 bp DNA linear VRL 24-SEP-2011
DEFINITION HIV-1 isolate 04013171_3_SC17 from USA envelope glycoprotein (env)
gene, complete cds; and vpu protein (vpu), rev protein (rev), and
tat protein (tat) genes, partial cds
ACCESSION GU330313
VERSION GU330313.1 GI:347350197
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 2625)
Show all sequences for reference 1
AUTHORS Li,H., Bar,K.J., Wang,S., Decker,J.M., Chen,Y., Sun,C.,
Salazar-Gonzalez,J.F., Salazar,M.G., Learn,G.H., Morgan,C.J.,
Schumacher,J.E., Hraber,P., Giorgi,E.E., Bhattacharya,T.,
Korber,B.T., Eron,J., Perelson,A.S., Eron,J.J., Cohen,M.S.,
Hicks,C.B., Haynes,B.F., Markowitz,M., Keele,B.F., Hahn,B.H. and
Shaw,G.M.
TITLE High Multiplicity Infection by HIV-1 in Men Who Have Sex with Men
JOURNAL PLoS Pathog. 6 (5), E1000890 (2010)
PUBMED 20485520
REFERENCE 2 (bases 1 to 2625)
Show all sequences for reference 2
AUTHORS Learn,G.H.
TITLE Direct Submission
JOURNAL Submitted (11-DEC-2009) Department of Medicine, University of
Alabama at Birmingham, 720 20th Street South, KAUL 852, Birmingham,
AL 35294, USA
COMMENT Annotation information was provided by the author. Some of the
information does not have GenBank feature identifiers and is being
provided in the comment section. Information in this section is
searchable in HIV Database at Los Alamos (www.hiv.lanl.gov).;
##HIVDataBaseData-START## Patient code 04013171 Sequence Name
04013171_3_SC17 Subtype B Sample date 2/6/2002 Patient sex M
Infection country USA Fiebig Stage IV DBID 2668427142
##HIVDataBaseData-END##
FEATURES Location/Qualifiers
source 1..2625
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="04013171_3_SC17"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="USA"
/collection_date="06-Feb-2002"
/note="subtype: B"
gene 1..2625
/gene="env"
CDS 1..2625
/gene="env"
/codon_start="1"
/transl_table="1"
/product="envelope glycoprotein"
/protein_id="AEO80582.1"
/db_xref="GI:347350201"
/translation="MRVKGIKKNYQHLWRWGTMLTMLLGMLMICSVTGQLWVTVYYGV
PVWKEATTTLFCASDAKAYKTEVHNVWATHACVPTDPNPQEVSLENVTENFNMWKNDM
VEQMHEDIISLWDQSLKPCVKLTPLCVTLNCTDYNITKTSNSTNTSSSSLDEMKGEIK
NCSFNITTSLRDKWQKEYALFYKLDVVPIDNGTTYTLINCNTSVITQACPKVSFEPIP
IHYCTPAGFALLKCNDKNFNGTGPCKNVSTVQCTHGIKPVVSTQLLLNGSLAEEEIVI
RSENFTNNAKTIIVQLKDPVEINCTRPGNNTRKSIHPGPGRAIYATEAIIGDIRRAHC
IINGTKWNNTLGQIVKKLGEQFNTAKIIFNHSSGGDPEIVMHSFNCGGEFFYCNSTPL
FNSSWTSNGTSNGTWKPDDAWNNNTKENITLLCRIKQIINMWQEVGKAMYAPPIRGQI
SCLSNITGLLLTRDGGGNNGSNNETFRPGGGNMKDNWRSELYKYKVVKIEPLGVAPTK
AKRRVVQREKRAVGTLGAMFLGFLGAAGSTMGAASMALTVQARQLLSGIVQQQNNLLR
AIEAQQHMLQLTVWGIKQLQARVLAVERYLKDQQLLGIWGCSGKLICTTAVPWNVSWS
NNRSLDKNDNRSLYYIWDNMTWMEWEREIDNYTGIIYNLIEQSQNQQEKNEQELLELD
KWASLWTWFDLSNWLWYIRIFIMIVGGLIGLRIVFAVLSIINRVRQGYSPLSFQTLLP
VPRGPDRPEGIEEGGGEQDRGRSNRLVHGLLALIWDDLRSLCLFSYHRLRDLLLIVAR
IVEILGRRGWEILKYWWNLLQYWSQELKNSAVSLLNATAIAVAEGTDRVIEVAQRIFR
AFLHIPRRIRQGFERCLL"
gene <1..92
/gene="vpu"
CDS <1..92
/gene="vpu"
/codon_start="3"
/transl_table="1"
/product="vpu protein"
/protein_id="AEO80581.1"
/db_xref="GI:347350200"
/translation="ESEGDQEELSALVEMGHHAHHAPWDVNDL"
gene <2209..2483
/gene="rev"
CDS <2209..2483
/gene="rev"
/codon_start="3"
/transl_table="1"
/product="rev protein"
/protein_id="AEO80580.1"
/db_xref="GI:347350199"
/translation="PPPSPEGTRQARRNRRRRWRARQRQIQSISAWIISTHLGRSTEP
VPLQLPPLERLTLDCSEDCGNSGTQGVGNPQVLVESPAVLESGTKE"
gene <2209..2299
/gene="tat"
CDS <2209..2299
/gene="tat"
/codon_start="2"
/transl_table="1"
/product="tat protein"
/protein_id="AEO80579.1"
/db_xref="GI:347350198"
/translation="PSSQSRGDPTGPKESKKEVESKTEADPID"
BASE COUNT 920 a 442 c 600 g 663 t
ORIGIN
1 atgagagtga aggggatcaa gaagaattat cagcacttgt ggagatgggg caccatgctc
61 accatgctcc ttgggatgtt aatgatctgt agtgttacag gacaattgtg ggtcacagtc
121 tattatggag tacctgtgtg gaaagaagca actaccactc tattttgtgc atcagatgct
181 aaggcatata agacagaggt acataatgtt tgggccacac atgcctgtgt acccacagac
241 cccaacccac aagaagtatc actggaaaat gtgacagaaa attttaatat gtggaaaaat
301 gacatggtag aacagatgca tgaggatata atcagtttat gggatcaaag cctaaagcca
361 tgtgtaaaac taaccccact ctgtgttact ttaaattgta ctgattacaa tattactaag
421 actagtaata gtactaatac cagtagtagt agtttggatg aaatgaaggg agaaataaaa
481 aactgctctt tcaatatcac cacaagccta agagataagt ggcagaaaga atatgcactg
541 ttttataaac ttgatgtagt tccaatagat aatggtacca catatacctt gataaattgt
601 aacacctcag tcattacaca ggcctgtcca aaggtatcct ttgagccaat tcccatacat
661 tattgtactc cagctggttt tgcactctta aagtgtaatg ataagaattt caatggaaca
721 ggaccatgta aaaatgtcag cacagtacaa tgtacacatg gaattaagcc agtagtgtca
781 actcaactgt tgttaaatgg cagtctagca gaagaagaga tagtaattag atctgaaaat
841 ttcacaaaca atgctaaaac cataatagtc caactaaaag atcctgtaga gatcaattgt
901 acaagacccg gcaacaatac aagaaaaagt atacatccag gaccagggag agcaatctat
961 gcaacagaag caataatagg agacataagg cgagcacatt gtatcattaa tggcacaaaa
1021 tggaataaca ctttaggaca gatagtcaaa aaattaggag agcaatttaa tacagcaaaa
1081 ataattttta atcactcctc aggaggggac ccagaaattg taatgcacag ttttaattgt
1141 ggaggggaat ttttctactg taattcaaca ccactgttta atagtagttg gacatctaat
1201 ggtacatcta atggtacttg gaagcctgat gatgcttgga ataataatac taaagaaaat
1261 atcacactcc tatgcagaat aaaacaaatt ataaacatgt ggcaggaagt aggaaaagca
1321 atgtatgccc ctcctattag aggacaaatt agttgtttat caaatattac agggctgcta
1381 ttaacaagag atggtggggg taataacggg agcaacaatg aaacctttag gcctggagga
1441 ggaaatatga aagacaattg gagaagtgaa ttatataaat ataaagtagt aaaaattgaa
1501 ccattaggag tagcacccac caaggcaaaa agaagagtgg tgcaaagaga aaaaagagca
1561 gtgggaacac taggagctat gtttcttggg ttcttgggag cagcaggaag cactatgggc
1621 gcagcgtcaa tggcgctgac ggtacaggcc agacaattat tgtctggtat agtgcagcag
1681 cagaacaatc tgctgagagc tattgaggcg caacagcata tgttgcaact cacagtctgg
1741 ggcattaaac agctccaggc aagagtcctg gctgtggaaa gatacctaaa ggatcaacag
1801 ctcctaggga tttggggttg ctctggaaaa ctcatttgca ccactgctgt accttggaat
1861 gttagttgga gtaataatag atctctagat aaaaatgata ataggtctct atattatatt
1921 tgggacaaca tgacctggat ggagtgggaa agagaaattg acaattacac aggcataata
1981 tataacttaa ttgaacaatc acagaaccaa caggaaaaga atgaacaaga attactggaa
2041 ttagataagt gggcaagttt atggacctgg tttgacctat caaattggct gtggtatata
2101 agaatattca taatgatagt aggaggcttg ataggtttaa gaatagtttt tgctgtgctt
2161 tctataataa atagagttag gcagggatac tcaccattat catttcagac cctcctccca
2221 gtcccgaggg gacccgacag gcccgaagga atcgaagaag gaggtggaga gcaagacaga
2281 ggcagatcca atcgattagt gcatggatta ttagcactca tctgggacga tctacggagc
2341 ctgtgcctct tcagctacca ccgcttgaga gacttactct tgattgtagc gaggattgtg
2401 gaaattctgg gacgcagggg gtgggaaatc ctcaagtatt ggtggaatct cctgcagtat
2461 tggagtcagg aactaaagaa tagtgctgtt agcttgctca acgccacagc tatagcagta
2521 gctgagggga cagatagggt aatagaagta gcacaaagaa tttttagagc ttttcttcat
2581 atacctagaa gaataagaca gggctttgaa aggtgtttat tataa
//
last modified: Tue May 31 10:56 2022