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LOCUS	    GU330313		    2625 bp    DNA     linear	VRL 24-SEP-2011
DEFINITION  HIV-1 isolate 04013171_3_SC17 from USA envelope glycoprotein (env)
	    gene, complete cds; and vpu protein (vpu), rev protein (rev), and
	    tat protein (tat) genes, partial cds
ACCESSION   GU330313
VERSION     GU330313.1 GI:347350197
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 2625)
            Show all sequences for reference 1
  AUTHORS   Li,H., Bar,K.J., Wang,S., Decker,J.M., Chen,Y., Sun,C.,
	    Salazar-Gonzalez,J.F., Salazar,M.G., Learn,G.H., Morgan,C.J.,
	    Schumacher,J.E., Hraber,P., Giorgi,E.E., Bhattacharya,T.,
	    Korber,B.T., Eron,J., Perelson,A.S., Eron,J.J., Cohen,M.S.,
	    Hicks,C.B., Haynes,B.F., Markowitz,M., Keele,B.F., Hahn,B.H. and
	    Shaw,G.M.
  TITLE     High Multiplicity Infection by HIV-1 in Men Who Have Sex with Men
  JOURNAL   PLoS Pathog. 6 (5), E1000890 (2010)
  PUBMED    20485520
REFERENCE   2 (bases 1 to 2625)
            Show all sequences for reference 2
  AUTHORS   Learn,G.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (11-DEC-2009) Department of Medicine, University of
	    Alabama at Birmingham, 720 20th Street South, KAUL 852, Birmingham,
	    AL 35294, USA
COMMENT     Annotation information was provided by the author. Some of the
	    information does not have GenBank feature identifiers and is being
	    provided in the comment section. Information in this section is
	    searchable in HIV Database at Los Alamos (www.hiv.lanl.gov).;
	    ##HIVDataBaseData-START## Patient code 04013171 Sequence Name
	    04013171_3_SC17 Subtype B Sample date 2/6/2002 Patient sex M
	    Infection country USA Fiebig Stage IV DBID 2668427142
	    ##HIVDataBaseData-END##
FEATURES             Location/Qualifiers
     source	     1..2625
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolate="04013171_3_SC17"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="USA"
		     /collection_date="06-Feb-2002"
		     /note="subtype: B"
     gene	     1..2625
		     /gene="env"
     CDS	     1..2625
		     /gene="env"
		     /codon_start="1"
		     /transl_table="1"
		     /product="envelope glycoprotein"
		     /protein_id="AEO80582.1"
		     /db_xref="GI:347350201"
		     /translation="MRVKGIKKNYQHLWRWGTMLTMLLGMLMICSVTGQLWVTVYYGV
		     PVWKEATTTLFCASDAKAYKTEVHNVWATHACVPTDPNPQEVSLENVTENFNMWKNDM
		     VEQMHEDIISLWDQSLKPCVKLTPLCVTLNCTDYNITKTSNSTNTSSSSLDEMKGEIK
		     NCSFNITTSLRDKWQKEYALFYKLDVVPIDNGTTYTLINCNTSVITQACPKVSFEPIP
		     IHYCTPAGFALLKCNDKNFNGTGPCKNVSTVQCTHGIKPVVSTQLLLNGSLAEEEIVI
		     RSENFTNNAKTIIVQLKDPVEINCTRPGNNTRKSIHPGPGRAIYATEAIIGDIRRAHC
		     IINGTKWNNTLGQIVKKLGEQFNTAKIIFNHSSGGDPEIVMHSFNCGGEFFYCNSTPL
		     FNSSWTSNGTSNGTWKPDDAWNNNTKENITLLCRIKQIINMWQEVGKAMYAPPIRGQI
		     SCLSNITGLLLTRDGGGNNGSNNETFRPGGGNMKDNWRSELYKYKVVKIEPLGVAPTK
		     AKRRVVQREKRAVGTLGAMFLGFLGAAGSTMGAASMALTVQARQLLSGIVQQQNNLLR
		     AIEAQQHMLQLTVWGIKQLQARVLAVERYLKDQQLLGIWGCSGKLICTTAVPWNVSWS
		     NNRSLDKNDNRSLYYIWDNMTWMEWEREIDNYTGIIYNLIEQSQNQQEKNEQELLELD
		     KWASLWTWFDLSNWLWYIRIFIMIVGGLIGLRIVFAVLSIINRVRQGYSPLSFQTLLP
		     VPRGPDRPEGIEEGGGEQDRGRSNRLVHGLLALIWDDLRSLCLFSYHRLRDLLLIVAR
		     IVEILGRRGWEILKYWWNLLQYWSQELKNSAVSLLNATAIAVAEGTDRVIEVAQRIFR
		     AFLHIPRRIRQGFERCLL"
     gene	     <1..92
		     /gene="vpu"
     CDS	     <1..92
		     /gene="vpu"
		     /codon_start="3"
		     /transl_table="1"
		     /product="vpu protein"
		     /protein_id="AEO80581.1"
		     /db_xref="GI:347350200"
		     /translation="ESEGDQEELSALVEMGHHAHHAPWDVNDL"
     gene	     <2209..2483
		     /gene="rev"
     CDS	     <2209..2483
		     /gene="rev"
		     /codon_start="3"
		     /transl_table="1"
		     /product="rev protein"
		     /protein_id="AEO80580.1"
		     /db_xref="GI:347350199"
		     /translation="PPPSPEGTRQARRNRRRRWRARQRQIQSISAWIISTHLGRSTEP
		     VPLQLPPLERLTLDCSEDCGNSGTQGVGNPQVLVESPAVLESGTKE"
     gene	     <2209..2299
		     /gene="tat"
     CDS	     <2209..2299
		     /gene="tat"
		     /codon_start="2"
		     /transl_table="1"
		     /product="tat protein"
		     /protein_id="AEO80579.1"
		     /db_xref="GI:347350198"
		     /translation="PSSQSRGDPTGPKESKKEVESKTEADPID"
BASE COUNT	920 a	 442 c	  600 g    663 t
ORIGIN
       1 atgagagtga aggggatcaa gaagaattat cagcacttgt ggagatgggg caccatgctc 
      61 accatgctcc ttgggatgtt aatgatctgt agtgttacag gacaattgtg ggtcacagtc 
     121 tattatggag tacctgtgtg gaaagaagca actaccactc tattttgtgc atcagatgct 
     181 aaggcatata agacagaggt acataatgtt tgggccacac atgcctgtgt acccacagac 
     241 cccaacccac aagaagtatc actggaaaat gtgacagaaa attttaatat gtggaaaaat 
     301 gacatggtag aacagatgca tgaggatata atcagtttat gggatcaaag cctaaagcca 
     361 tgtgtaaaac taaccccact ctgtgttact ttaaattgta ctgattacaa tattactaag 
     421 actagtaata gtactaatac cagtagtagt agtttggatg aaatgaaggg agaaataaaa 
     481 aactgctctt tcaatatcac cacaagccta agagataagt ggcagaaaga atatgcactg 
     541 ttttataaac ttgatgtagt tccaatagat aatggtacca catatacctt gataaattgt 
     601 aacacctcag tcattacaca ggcctgtcca aaggtatcct ttgagccaat tcccatacat 
     661 tattgtactc cagctggttt tgcactctta aagtgtaatg ataagaattt caatggaaca 
     721 ggaccatgta aaaatgtcag cacagtacaa tgtacacatg gaattaagcc agtagtgtca 
     781 actcaactgt tgttaaatgg cagtctagca gaagaagaga tagtaattag atctgaaaat 
     841 ttcacaaaca atgctaaaac cataatagtc caactaaaag atcctgtaga gatcaattgt 
     901 acaagacccg gcaacaatac aagaaaaagt atacatccag gaccagggag agcaatctat 
     961 gcaacagaag caataatagg agacataagg cgagcacatt gtatcattaa tggcacaaaa 
    1021 tggaataaca ctttaggaca gatagtcaaa aaattaggag agcaatttaa tacagcaaaa 
    1081 ataattttta atcactcctc aggaggggac ccagaaattg taatgcacag ttttaattgt 
    1141 ggaggggaat ttttctactg taattcaaca ccactgttta atagtagttg gacatctaat 
    1201 ggtacatcta atggtacttg gaagcctgat gatgcttgga ataataatac taaagaaaat 
    1261 atcacactcc tatgcagaat aaaacaaatt ataaacatgt ggcaggaagt aggaaaagca 
    1321 atgtatgccc ctcctattag aggacaaatt agttgtttat caaatattac agggctgcta 
    1381 ttaacaagag atggtggggg taataacggg agcaacaatg aaacctttag gcctggagga 
    1441 ggaaatatga aagacaattg gagaagtgaa ttatataaat ataaagtagt aaaaattgaa 
    1501 ccattaggag tagcacccac caaggcaaaa agaagagtgg tgcaaagaga aaaaagagca 
    1561 gtgggaacac taggagctat gtttcttggg ttcttgggag cagcaggaag cactatgggc 
    1621 gcagcgtcaa tggcgctgac ggtacaggcc agacaattat tgtctggtat agtgcagcag 
    1681 cagaacaatc tgctgagagc tattgaggcg caacagcata tgttgcaact cacagtctgg 
    1741 ggcattaaac agctccaggc aagagtcctg gctgtggaaa gatacctaaa ggatcaacag 
    1801 ctcctaggga tttggggttg ctctggaaaa ctcatttgca ccactgctgt accttggaat 
    1861 gttagttgga gtaataatag atctctagat aaaaatgata ataggtctct atattatatt 
    1921 tgggacaaca tgacctggat ggagtgggaa agagaaattg acaattacac aggcataata 
    1981 tataacttaa ttgaacaatc acagaaccaa caggaaaaga atgaacaaga attactggaa 
    2041 ttagataagt gggcaagttt atggacctgg tttgacctat caaattggct gtggtatata 
    2101 agaatattca taatgatagt aggaggcttg ataggtttaa gaatagtttt tgctgtgctt 
    2161 tctataataa atagagttag gcagggatac tcaccattat catttcagac cctcctccca 
    2221 gtcccgaggg gacccgacag gcccgaagga atcgaagaag gaggtggaga gcaagacaga 
    2281 ggcagatcca atcgattagt gcatggatta ttagcactca tctgggacga tctacggagc 
    2341 ctgtgcctct tcagctacca ccgcttgaga gacttactct tgattgtagc gaggattgtg 
    2401 gaaattctgg gacgcagggg gtgggaaatc ctcaagtatt ggtggaatct cctgcagtat 
    2461 tggagtcagg aactaaagaa tagtgctgtt agcttgctca acgccacagc tatagcagta 
    2521 gctgagggga cagatagggt aatagaagta gcacaaagaa tttttagagc ttttcttcat 
    2581 atacctagaa gaataagaca gggctttgaa aggtgtttat tataa
//
last modified: Tue May 31 10:56 2022


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