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LOCUS	    GU330267		    2622 bp    DNA     linear	VRL 24-SEP-2011
DEFINITION  HIV-1 isolate 04013171_3_2C11 from USA envelope glycoprotein (env)
	    gene, complete cds; and vpu protein (vpu), rev protein (rev), and
	    tat protein (tat) genes, partial cds
ACCESSION   GU330267
VERSION     GU330267.1 GI:347349971
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 2622)
            Show all sequences for reference 1
  AUTHORS   Li,H., Bar,K.J., Wang,S., Decker,J.M., Chen,Y., Sun,C.,
	    Salazar-Gonzalez,J.F., Salazar,M.G., Learn,G.H., Morgan,C.J.,
	    Schumacher,J.E., Hraber,P., Giorgi,E.E., Bhattacharya,T.,
	    Korber,B.T., Eron,J., Perelson,A.S., Eron,J.J., Cohen,M.S.,
	    Hicks,C.B., Haynes,B.F., Markowitz,M., Keele,B.F., Hahn,B.H. and
	    Shaw,G.M.
  TITLE     High Multiplicity Infection by HIV-1 in Men Who Have Sex with Men
  JOURNAL   PLoS Pathog. 6 (5), E1000890 (2010)
  PUBMED    20485520
REFERENCE   2 (bases 1 to 2622)
            Show all sequences for reference 2
  AUTHORS   Learn,G.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (11-DEC-2009) Department of Medicine, University of
	    Alabama at Birmingham, 720 20th Street South, KAUL 852, Birmingham,
	    AL 35294, USA
COMMENT     Annotation information was provided by the author. Some of the
	    information does not have GenBank feature identifiers and is being
	    provided in the comment section. Information in this section is
	    searchable in HIV Database at Los Alamos (www.hiv.lanl.gov).;
	    ##HIVDataBaseData-START## Patient code 04013171 Sequence Name
	    04013171_3_2C11 Subtype B Sample date 2/6/2002 Patient sex M
	    Infection country USA Fiebig Stage IV DBID 2284016932
	    ##HIVDataBaseData-END##
FEATURES             Location/Qualifiers
     source	     1..2622
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolate="04013171_3_2C11"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="USA"
		     /collection_date="06-Feb-2002"
		     /note="subtype: B"
     gene	     1..2622
		     /gene="env"
     CDS	     1..2622
		     /gene="env"
		     /codon_start="1"
		     /transl_table="1"
		     /product="envelope glycoprotein"
		     /protein_id="AEO80402.1"
		     /db_xref="GI:347349975"
		     /translation="MRVKGIKKNYQHLWRWGTMLTMLLGMLMICSVTGQLWVTVYYGV
		     PVWKEATTTLFCASDAKAYKTEVHNVWATHACVPTDPNPQEVSLENVTENFNMWKNDM
		     VEQMHEDIISLWDQSLKPCVKLTPLCVTLNCTDYNITKTSNSTNTSSSSLEEMKGEIK
		     NCSFNITTSLRDKWQKEYALFYKLDVVPIDNGTTYTLINCNTSVITQACPKVSFEPIP
		     IHYCTPAGFALLKCNDKNFNGTGPCKNVSTVQCTHGIKPVVSTQLLLNGSLAEEEIVI
		     RSENFTNNAKTIIVQLKDPVEINCTRPGNNTRKSIHPGPGRAIYATEAIIGDIRRAHC
		     IINGTKWNNTLGQIVKKLGEQFNTTKIIFNHSSGGDPEIVMHSFNCGGEFFYCNSTPL
		     FNSTWTSNGTSNGTWKPDDAWKNDTRENITLLCRIKQIINMWQEVGKAMYAPPIRGQI
		     SCLSNITGLLLTRDGGINGSNNETFRPGGGNMKDNWRSELYKYKVVKIEPLGVAPTKA
		     KRRVVQREKRAVGTLGAMFLGFLGAAGSTMGAASMALTVQARQLLSGIVQQQNNLLRA
		     IEAQQHMLQLTVWGIKQLQARVLAVERYLKDQQLLGIWGCSGKLICTTAVPWNVSWSN
		     NRSLDKNDNRSLYYIWDNMTWMEWEREIDNYTGIIYTLIEQSQNQQEKNEQELLELDK
		     WASLWNWFNITQWLWYIKIFIMIVGGLIGLRIVFAVLSIVNRVRQGYSPLSFQTLLPV
		     PRGPDRPEGIEEGGGEQDRGRSNRLVHGLLALIWDDLRSLCLFSYHRLRDLLLIVARI
		     VEILGRRGWEIRKYWWNLLQYWSQELKNSAVSLLNATAIAVAEGTDRVIEVAQRIFRA
		     FLHIPRRIRQGFERCLL"
     gene	     <1..92
		     /gene="vpu"
     CDS	     <1..92
		     /gene="vpu"
		     /codon_start="3"
		     /transl_table="1"
		     /product="vpu protein"
		     /protein_id="AEO80401.1"
		     /db_xref="GI:347349974"
		     /translation="ESEGDQEELSALVEMGHHAHHAPWDVNDL"
     gene	     <2206..2480
		     /gene="rev"
     CDS	     <2206..2480
		     /gene="rev"
		     /codon_start="3"
		     /transl_table="1"
		     /product="rev protein"
		     /protein_id="AEO80400.1"
		     /db_xref="GI:347349973"
		     /translation="PPPSPEGTRQARRNRRRRWRARQRQIQSISAWIISTHLGRSTEP
		     VPLQLPPLERLTLDCSEDCGNSGTQGVGNPQVLVESPAVLESGTKE"
     gene	     <2206..2296
		     /gene="tat"
     CDS	     <2206..2296
		     /gene="tat"
		     /codon_start="2"
		     /transl_table="1"
		     /product="tat protein"
		     /protein_id="AEO80399.1"
		     /db_xref="GI:347349972"
		     /translation="PSSQSRGDPTGPKESKKEVESKTEADPID"
BASE COUNT	920 a	 445 c	  601 g    656 t
ORIGIN
       1 atgagagtga aggggatcaa gaagaattat cagcacttgt ggagatgggg caccatgctc 
      61 accatgctcc ttgggatgtt aatgatctgt agtgttacag gacaattgtg ggtcacagtc 
     121 tattatggag tacctgtgtg gaaagaagca actaccactc tattttgtgc atcagatgct 
     181 aaggcatata agacagaggt acataatgtt tgggccacac atgcctgtgt acccacagac 
     241 cccaacccac aagaagtatc actggaaaat gtgacagaaa attttaatat gtggaaaaat 
     301 gacatggtag aacagatgca tgaggatata atcagtttat gggatcaaag cctaaagcca 
     361 tgtgtaaaac taaccccact ctgtgttact ttaaattgta ctgattacaa tattactaag 
     421 actagtaata gtactaatac cagtagtagt agtttggaag aaatgaaggg agaaataaaa 
     481 aactgctctt tcaatatcac cacaagccta agagataagt ggcagaaaga atatgcactg 
     541 ttttataaac ttgatgtagt tccaatagat aatggtacca catatacctt gataaattgt 
     601 aacacctcag tcattacaca ggcctgtcca aaggtatcct ttgagccaat tcccatacat 
     661 tattgtactc cagctggttt tgcactctta aagtgtaatg ataagaattt caatggaaca 
     721 ggaccatgta aaaatgtcag cacagtacaa tgtacacatg gaattaagcc agtagtgtca 
     781 actcaactgt tgttaaatgg cagtctagca gaagaagaga tagtaatcag atctgaaaat 
     841 ttcacaaaca atgctaaaac cataatagtc cagctaaaag atcctgtaga gatcaattgt 
     901 acaagacccg gcaacaatac aagaaaaagt atacatccag gaccagggag agcaatctat 
     961 gcaacagaag caataatagg agatataagg cgagcacatt gtatcattaa tggcacaaaa 
    1021 tggaataaca ctttaggaca gatagtcaaa aaattaggag aacaatttaa tacaacaaaa 
    1081 ataattttta atcactcctc aggaggggac ccagaaattg taatgcacag ttttaattgt 
    1141 ggaggggaat ttttctactg taattcaaca ccactgttta atagtacttg gacatctaat 
    1201 ggtacatcta atggtacttg gaagcctgat gatgcttgga agaatgatac tagagaaaat 
    1261 atcacactcc tatgcagaat aaaacaaatt ataaacatgt ggcaggaagt aggaaaagca 
    1321 atgtatgccc ctcctatcag aggacaaatt agttgtttat caaatattac agggctgcta 
    1381 ttaacaagag atggtgggat taacgggagc aacaatgaaa ccttcagacc tggaggagga 
    1441 aatatgaaag acaattggag aagtgaatta tataaatata aagtagtaaa aattgaacca 
    1501 ttaggagtag cacccaccaa ggcaaaaaga agagtggtgc aaagagaaaa aagagcagtg 
    1561 ggaacattag gagctatgtt ccttgggttc ttgggagcag caggaagcac tatgggcgca 
    1621 gcgtcaatgg cgctgacggt acaggccaga caattattgt ctggtatagt gcagcagcag 
    1681 aacaatctgc tgagagctat tgaggcgcaa cagcatatgt tgcaactcac agtctggggt 
    1741 atcaagcagc tccaggcaag agtcctggct gtggaaagat acctaaagga tcaacagctc 
    1801 ctggggattt ggggttgctc tggaaaactc atttgcacca ctgctgtacc ttggaatgtt 
    1861 agttggagta ataatagatc tctagataaa aatgataata ggtctctata ttatatttgg 
    1921 gacaacatga cctggatgga gtgggaaaga gaaattgaca attacacagg cataatatac 
    1981 accctaattg aacaatcaca gaaccaacag gaaaagaatg aacaagaatt attggaatta 
    2041 gataagtggg caagtttgtg gaattggttt aacataacac aatggctgtg gtatataaaa 
    2101 atattcataa tgatagtagg aggcttgata ggtttaagaa tagtttttgc tgtgctttct 
    2161 atagtaaata gagttaggca gggatactca ccattatcat ttcagaccct cctcccagtc 
    2221 ccgaggggac ccgacaggcc cgaaggaatc gaagaaggag gtggagagca agacagaggc 
    2281 agatccaatc gattagtgca tggattatta gcactcatct gggacgatct acggagcctg 
    2341 tgcctcttca gctaccaccg cttgagagac ttactcttga ttgtagcgag gattgtggaa 
    2401 attctgggac gcagggggtg ggaaatccgc aagtattggt ggaatctcct gcagtattgg 
    2461 agtcaggaac taaagaatag tgctgttagc ttgctcaacg ccacagctat agcagtagct 
    2521 gaggggacag atagggtaat agaagtagca caaagaattt ttagagcttt tcttcatata 
    2581 cctagaagaa taagacaggg ctttgaaagg tgtttattat aa
//
last modified: Tue May 31 10:56 2022


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