HIV Databases HIV Databases home HIV Databases home
HIV Sequence Database



Download: ENTIRE SEQUENCE SEQUENCE FRAGMENT start end
Format:  
View NCBI entry		Download GenBank file		Graphics View		Download GFF3 File

LOCUS	    GU191354		    2568 bp    RNA     linear	VRL 09-FEB-2010
DEFINITION  HIV-1 isolate 008-D1 clone 16 from Germany envelope glycoprotein
	    (env) gene, complete cds
ACCESSION   GU191354
VERSION     GU191354.1 GI:288189278
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 2568)
            Show all sequences for reference 1
  AUTHORS   McNicholas,P., Wei,Y., Whitcomb,J., Greaves,W., Black,T.A.,
	    Tremblay,C.L. and Strizki,J.M.
  TITLE     Characterization of emergent HIV resistance in treatment-naive
	    subjects enrolled in a vicriviroc phase 2 trial.
  JOURNAL   J. Infect. Dis.. 201(10); 1470-80 (2010)
  PUBMED    20373959
REFERENCE   2 (bases 1 to 2568)
            Show all sequences for reference 2
  AUTHORS   McNicholas,P., Wei,Y., Whitcomb,J., Greaves,W., Black,T.A.,
	    Tremblay,C.L. and Strizki,J.M.
  TITLE     Direct Submission
  JOURNAL   Submitted (11-NOV-2009) Biological Research-Virology, Schering
	    Plough Research Institute, 2015 Galloping Hill Road, K15/
	    E405/4945, Kenilworth, NJ 07033, USA
FEATURES             Location/Qualifiers
     source	     1..2568
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="008-D1"
		     /isolation_source="plasma sample of subject enrolled in a
		     clinical trial"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /clone="16"
		     /country="Germany"
		     /collection_date="19-Nov-2004"
     gene	     1..2568
		     /gene="env"
     CDS	     1..2568
		     /gene="env"
		     /codon_start="1"
		     /transl_table="1"
		     /product="envelope glycoprotein"
		     /protein_id="ADC43035.1"
		     /db_xref="GI:288189279"
		     /translation="MKVKEIRMSWQPWRGGILLLGMLMLMSYNAAEESWVTVYYGVPV
		     WKEATTTLFCASDAKAYDTEVHNVWATHACVPTDPNPQEVVLENVTENFNMWKNDMVE
		     QMHEDIISLWDQSLKPCVKLTPLCVTLNCSDVNVTRTNNKTETSNNTSLRMEQGELKN
		     CSFNITTSIKKQVQKEYALFDRNDVVPIDSDNTSYMLISCNTSVITQTCPKVSFEPIP
		     IHFCAPAGFAILKCNDKKFNGTGPCRNVSTVQCTHGIRPVVSTQLLLNGSLAEEEVIL
		     SSENITNNAKTIIVHLNESIEINCTRPNNNTRKSINIGPGRAFFATGDIIGDIRKAYC
		     NISGAKWNNTLKQIATKLREQFGNNKTINFSQPNPGGDPEIVMHSFNCGGEFFYCNTT
		     KLFNSAWTWNDTTGSNNTEGMITLPCRIKQIINRWQEVGKAMYAPPISGLIRCSSNIT
		     GLLLTRDGGNNTNETEIFRPGGGEMRDNWRSELYKYKVVKIEPLGVAPTKAKRRVVQR
		     EKRAVTLGAMFLGFLGAAGSTMGAASLTLTVQARQLLSGIVQQQSNLLRAIEAQQHML
		     QLTVWGIKQLQARVLAVERYLQDQQLLGIWGCSGKLICTTTVPWNASWSNKSLANIWD
		     NMTWMEWEREIGNYTSLIYTLIEESQNQQEKNEQDLLALDKWASLWNWFNISNWLWYI
		     KIFIMIVGGLIGLRIVFTVLSIVNRVRQGYSPLSFQTHHPAPRGPDRPEGIEEEGGER
		     DKGRSEPLVTGFLAIIWVDLRSLCLFLYHRLRDLLLIATRIAELLGHRGWEALKYWWN
		     LLQYWGQELKSSAVSLLNATTIAVAEGTDRVIEVVQGTCRAIIHIPRRLRQSLEQRL"
BASE COUNT	890 a	 443 c	  611 g    624 t
ORIGIN
       1 atgaaagtga aggagatcag gatgagttgg cagccctgga gagggggcat cttgctcctt 
      61 gggatgctga tgctgatgag ctataatgca gcagaggaat catgggtcac agtctattat 
     121 ggggtacctg tgtggaaaga agcaaccacc acattatttt gtgcatcaga tgctaaagcc 
     181 tatgacacag aggtacataa tgtttgggcc acacatgcct gtgtgcccac agaccctaac 
     241 ccacaagaag tagtattgga aaatgtgaca gaaaatttta atatgtggaa aaatgacatg 
     301 gtagaacaga tgcatgagga tataatcagc ttatgggatc aaagcctaaa gccgtgtgta 
     361 aaattaaccc cactctgtgt tactttaaat tgctctgatg taaatgtcac tagaaccaat 
     421 aataaaactg aaaccagtaa taatactagt ttaaggatgg aacaaggaga actaaaaaac 
     481 tgctctttca atatcaccac aagcataaaa aagcaggtgc agaaagaata tgcgcttttt 
     541 gatagaaatg atgtagtacc aatagattca gataatacaa gttatatgtt gataagttgt 
     601 aacacctcag tcattacaca gacctgtcca aaggtatcct ttgaaccaat tcccatacat 
     661 ttttgtgccc cagctggttt tgcgattcta aaatgtaatg ataagaaatt caatggaaca 
     721 ggaccatgta gaaatgtcag cacagtacag tgtacacatg gaattaggcc agtagtgtca 
     781 acacaactgc tgttaaatgg cagcctagca gaagaagagg taatacttag ctctgaaaat 
     841 atcacgaaca atgctaaaac cataatagta catctaaatg aatctataga aattaattgt 
     901 acaagaccta acaacaatac aaggaaaagt ataaatatag gaccagggag agcatttttt 
     961 gcaacaggag acataatagg agatataaga aaagcatatt gtaatattag tggagcaaaa 
    1021 tggaataaca ctttaaaaca gatagctaca aaattaagag aacaatttgg gaataataaa 
    1081 acaataaact ttagtcaacc aaacccagga ggggacccag aaattgtaat gcacagtttt 
    1141 aattgtggag gggagttttt ctactgtaat acaacaaagc tgtttaatag tgcttggact 
    1201 tggaatgata ctacagggtc aaataacact gaaggcatga tcacactccc atgcagaata 
    1261 aaacaaatta taaacaggtg gcaggaagta ggaaaagcaa tgtatgcccc tcccatcagt 
    1321 gggctaatta gatgttcatc aaatattaca gggctgttat taacaagaga tggtggtaat 
    1381 aatactaatg agactgagat cttcagacct ggaggaggag aaatgaggga caattggaga 
    1441 agtgaattat ataaatataa agtagtaaaa attgaaccat taggagtagc acccaccaag 
    1501 gcaaagagga gagtggtgca gagagaaaaa agagcagtga cgctgggagc tatgttcctt 
    1561 gggttcttgg gagcagcagg aagcactatg ggcgcagcgt cactgacgct gacggtacag 
    1621 gccagacaat tattgtctgg tatagtgcag cagcagagca atctgctgag ggctattgag 
    1681 gcgcagcagc atatgttgca actcacagtc tggggcatta agcagctcca ggcaagagtt 
    1741 cttgctgtgg aaagatacct acaggatcaa cagctcctag ggatttgggg ttgctctgga 
    1801 aaactcattt gcaccactac tgtgccttgg aatgctagtt ggagtaataa atctctggct 
    1861 aacatttggg ataacatgac ctggatggaa tgggagagag aaattggcaa ttacacaagc 
    1921 ttaatatata ccttaattga agaatcgcag aaccaacaag aaaagaatga acaagactta 
    1981 ctggcattgg ataagtgggc aagtttgtgg aattggttta acatatcaaa ttggctgtgg 
    2041 tatataaaaa tattcataat gatagtagga ggtttaatag gtttaagaat agtttttact 
    2101 gtactttcta tagtgaatag agttaggcag ggatactcac ccttgtcgtt ccagacccac 
    2161 cacccagctc cgaggggacc cgacaggccc gaaggaatcg aagaagaagg tggagagaga 
    2221 gacaaaggca gatccgaacc tttagtgact ggattcttag caatcatctg ggtcgaccta 
    2281 cggagcctgt gcctcttcct ctaccaccgc ttgagagact tactcttgat tgcaacgagg 
    2341 attgcggaac ttctgggaca cagggggtgg gaagccctca agtattggtg gaatctcctg 
    2401 cagtattggg gtcaggaact gaagagtagt gctgttagtt tgcttaatgc cacaactata 
    2461 gcagtagctg aggggacaga tagggttata gaagtagtac aaggaacctg tagagctatt 
    2521 atccacatac ctagaagact aagacagagc ttagagcaaa ggctataa
//
last modified: Tue May 31 10:56 2022


Questions or comments? Contact us at seq-info@lanl.gov.

 
Operated by Triad National Security, LLC for the U.S. Department of Energy's National Nuclear Security Administration
© Copyright Triad National Security, LLC. All Rights Reserved | Disclaimer/Privacy

Dept of Health & Human Services Los Alamos National Institutes of Health