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LOCUS	    GU121734		     864 bp    DNA     linear	VRL 11-NOV-2009
DEFINITION  HIV-1 isolate Virus58 from USA integrase (pol) gene, partial cds
ACCESSION   GU121734
VERSION     GU121734.1 GI:263201527
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 864)
            Show all sequences for reference 1
  AUTHORS   Hatano,H., Lampiris,H., Fransen,S., Gupta,S., Huang,W., Hoh,R.,
	    Martin,J.N., Lalezari,J., Bangsberg,D., Petropoulos,C. and
	    Deeks,S.G.
  TITLE     Evolution of integrase resistance during failure of integrase
	    inhibitor-based antiretroviral therapy.
  JOURNAL   J. Acquir. Immune Defic. Syndr.. 54(4); 389-93 (2010)
  PUBMED    20300008
REFERENCE   2 (bases 1 to 864)
            Show all sequences for reference 2
  AUTHORS   Hatano,H., Lampiris,H., Fransen,S., Gupta,S., Huang,W., Hoh,R.,
	    Martin,J.N., Lalezari,J., Bangsberg,D., Petropoulos,C. and
	    Deeks,S.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-OCT-2009) Medicine/AIDS, UCSF, 995 Potrero Avenue,
	    Building 80, Ward 84, San Francisco, CA 94110, USA
FEATURES             Location/Qualifiers
     source	     1..864
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolate="Virus58"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="USA"
		     /collection_date="05-Jun-2007"
     gene	     <1..>864
		     /gene="pol"
     CDS	     <1..>864
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="integrase"
		     /protein_id="ACY70298.1"
		     /db_xref="GI:263201528"
		     /translation="FLDGIDRAQEEHEKYHNNWRAMASDFNLPPIVAKEIVASCDKCQ
		     LKGEAIHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFIL
		     KLAGRWPVKTIHTDNGSNFTSAAVKAACWWAGVKQEFGIPYNPQSQGVVESMNKELKK
		     IIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDIQTQELQKQII
		     KIQNFRVYYRDSREPLWKGPAKLLWKGEGAVVIQDNSEIKVVPRRKAKIIRDYGKQMA
		     GDDCVASRQDED"
BASE COUNT	339 a	 129 c	  215 g    178 t      3 other
ORIGIN
       1 tttttggatg gaatagatag ggcccaagaa gaacatgaga aatatcacaa taattggaga 
      61 gcaatggcca gtgattttaa cctgccacct atagtagcaa aagaaatagt agccagctgt 
     121 gataaatgtc agctaaaagg agaagccata catggacaag tagactgtag tccaggaata 
     181 tggcaactag attgtacaca tttagaagga aaagttatcc tggtagcagt ccatgtagcc 
     241 agtggatata tagaggcaga agtaattcca gcagagacag ggcaggaaac agcatacttt 
     301 atattaaaat tagcaggaag atggccagta aaaacaatac atacagacaa tggtagcaat 
     361 ttcaccagtg ctgcggttaa ggccgcctgt tggtgggcag gagtcaagca ggaatttggc 
     421 attccctaca atcctcaaag tcaaggagta gtagaatcya tgaataaaga attaaagaaa 
     481 attataggac aggtaagaga tcaggctgaa cacctyaaga cagcagtaca aatggcagta 
     541 ttcatccaca attttaaaag aaaagggggg attgggggat acagtgcagg ggaaagaata 
     601 gtagacataa tagcaacaga catacaaact caagaactac aaaaacaaat tataaaaatt 
     661 caaaattttc gggtttatta cagggacagc agagagccac tttggaaagg accagcaaag 
     721 ctcctctgga aaggtgaagg ggcagtagta atacaagaya atagtgaaat aaaagtagtg 
     781 ccaagaagaa aagcaaagat cattagggat tatggaaaac agatggcagg tgatgattgt 
     841 gtggcaagta gacaggatga ggat
//
last modified: Tue May 31 10:56 2022


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