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LOCUS GU121734 864 bp DNA linear VRL 11-NOV-2009
DEFINITION HIV-1 isolate Virus58 from USA integrase (pol) gene, partial cds
ACCESSION GU121734
VERSION GU121734.1 GI:263201527
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 864)
Show all sequences for reference 1
AUTHORS Hatano,H., Lampiris,H., Fransen,S., Gupta,S., Huang,W., Hoh,R.,
Martin,J.N., Lalezari,J., Bangsberg,D., Petropoulos,C. and
Deeks,S.G.
TITLE Evolution of integrase resistance during failure of integrase
inhibitor-based antiretroviral therapy.
JOURNAL J. Acquir. Immune Defic. Syndr.. 54(4); 389-93 (2010)
PUBMED 20300008
REFERENCE 2 (bases 1 to 864)
Show all sequences for reference 2
AUTHORS Hatano,H., Lampiris,H., Fransen,S., Gupta,S., Huang,W., Hoh,R.,
Martin,J.N., Lalezari,J., Bangsberg,D., Petropoulos,C. and
Deeks,S.G.
TITLE Direct Submission
JOURNAL Submitted (20-OCT-2009) Medicine/AIDS, UCSF, 995 Potrero Avenue,
Building 80, Ward 84, San Francisco, CA 94110, USA
FEATURES Location/Qualifiers
source 1..864
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="Virus58"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="USA"
/collection_date="05-Jun-2007"
gene <1..>864
/gene="pol"
CDS <1..>864
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="integrase"
/protein_id="ACY70298.1"
/db_xref="GI:263201528"
/translation="FLDGIDRAQEEHEKYHNNWRAMASDFNLPPIVAKEIVASCDKCQ
LKGEAIHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFIL
KLAGRWPVKTIHTDNGSNFTSAAVKAACWWAGVKQEFGIPYNPQSQGVVESMNKELKK
IIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDIQTQELQKQII
KIQNFRVYYRDSREPLWKGPAKLLWKGEGAVVIQDNSEIKVVPRRKAKIIRDYGKQMA
GDDCVASRQDED"
BASE COUNT 339 a 129 c 215 g 178 t 3 other
ORIGIN
1 tttttggatg gaatagatag ggcccaagaa gaacatgaga aatatcacaa taattggaga
61 gcaatggcca gtgattttaa cctgccacct atagtagcaa aagaaatagt agccagctgt
121 gataaatgtc agctaaaagg agaagccata catggacaag tagactgtag tccaggaata
181 tggcaactag attgtacaca tttagaagga aaagttatcc tggtagcagt ccatgtagcc
241 agtggatata tagaggcaga agtaattcca gcagagacag ggcaggaaac agcatacttt
301 atattaaaat tagcaggaag atggccagta aaaacaatac atacagacaa tggtagcaat
361 ttcaccagtg ctgcggttaa ggccgcctgt tggtgggcag gagtcaagca ggaatttggc
421 attccctaca atcctcaaag tcaaggagta gtagaatcya tgaataaaga attaaagaaa
481 attataggac aggtaagaga tcaggctgaa cacctyaaga cagcagtaca aatggcagta
541 ttcatccaca attttaaaag aaaagggggg attgggggat acagtgcagg ggaaagaata
601 gtagacataa tagcaacaga catacaaact caagaactac aaaaacaaat tataaaaatt
661 caaaattttc gggtttatta cagggacagc agagagccac tttggaaagg accagcaaag
721 ctcctctgga aaggtgaagg ggcagtagta atacaagaya atagtgaaat aaaagtagtg
781 ccaagaagaa aagcaaagat cattagggat tatggaaaac agatggcagg tgatgattgt
841 gtggcaagta gacaggatga ggat
//
last modified: Tue May 31 10:56 2022