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LOCUS	    GU121702		     864 bp    DNA     linear	VRL 11-NOV-2009
DEFINITION  HIV-1 isolate Virus26 from USA integrase (pol) gene, partial cds
ACCESSION   GU121702
VERSION     GU121702.1 GI:263201463
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 864)
            Show all sequences for reference 1
  AUTHORS   Hatano,H., Lampiris,H., Fransen,S., Gupta,S., Huang,W., Hoh,R.,
	    Martin,J.N., Lalezari,J., Bangsberg,D., Petropoulos,C. and
	    Deeks,S.G.
  TITLE     Evolution of integrase resistance during failure of integrase
	    inhibitor-based antiretroviral therapy.
  JOURNAL   J. Acquir. Immune Defic. Syndr.. 54(4); 389-93 (2010)
  PUBMED    20300008
REFERENCE   2 (bases 1 to 864)
            Show all sequences for reference 2
  AUTHORS   Hatano,H., Lampiris,H., Fransen,S., Gupta,S., Huang,W., Hoh,R.,
	    Martin,J.N., Lalezari,J., Bangsberg,D., Petropoulos,C. and
	    Deeks,S.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-OCT-2009) Medicine/AIDS, UCSF, 995 Potrero Avenue,
	    Building 80, Ward 84, San Francisco, CA 94110, USA
FEATURES             Location/Qualifiers
     source	     1..864
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolate="Virus26"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="USA"
		     /collection_date="06-Sep-2006"
     gene	     <1..>864
		     /gene="pol"
     CDS	     <1..>864
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="integrase"
		     /protein_id="ACY70266.1"
		     /db_xref="GI:263201464"
		     /translation="FLDGIDKAQDXHXKYHXNWRAMXXDFNLPPVVAKEIVASCDKCQ
		     LKGEAMHGQVDCSPGIWQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFIL
		     XLAGRWPVKVIHTDNGPNFISATVKAACWWAGIXQEFGIPYNPQSQGVVESMNKELKK
		     IIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIXDIIATDIQTKELQKQIT
		     KIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSEIKVVPRRKAKIIRDYGKQMA
		     GDDCVASRQDED"
BASE COUNT	330 a	 123 c	  203 g    183 t     25 other
ORIGIN
       1 tttttagatg gratagataa ggcccaagat gamcatgasa aatatcacas taattggaga 
      61 gcaatggyta rtgattttaa cctgccacct gtagtagcaa aagagatagt agccagctgt 
     121 gataaatgtc agctaaaagg agaagccatg catggacaag tagactgtag tccaggaata 
     181 tggcaactag attgyacaca tttagaagga aaaattatcc tggtagcagt tcatgtagcc 
     241 agtggatata tagaagcaga agtyattcca gcagagacag ggcaggaaac agcatacttt 
     301 atcttaarrt tagcaggaag atggccagta aaagtaatac atacagacaa tgggccaaat 
     361 ttcatcagtg ctacagttaa rgcygcctgt tggtgggcag gratcargca ggaatttggc 
     421 attccctaca atccccaaag tcaaggagta gtrgaatcta tgaayaaaga attaaagaaa 
     481 attataggac aagtaagaga tcargctgaa caycttaaga cagcagtaca aatggcagta 
     541 ttcattcaca attttaaaag aaaagggggg attggrggat acagtgcrgg ggaaagaata 
     601 rtagacataa tagcaacaga catacaaact aaagaactac aaaaacaaat tacaaaaatt 
     661 caaaattttc gggtttatta cagggacagc agagatccac tttggaaagg accagcaaag 
     721 cttctctgga aaggtgaagg ggcagtagta atacaagaya atagtgaaat aaaagtrgtg 
     781 ccaagaagaa aagcaaarat cattagggat tatggmaaac agatggcagg tgatgattgt 
     841 gtggcaagta gacaggatga ggat
//
last modified: Tue May 31 10:56 2022


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