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LOCUS GU121702 864 bp DNA linear VRL 11-NOV-2009
DEFINITION HIV-1 isolate Virus26 from USA integrase (pol) gene, partial cds
ACCESSION GU121702
VERSION GU121702.1 GI:263201463
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 864)
Show all sequences for reference 1
AUTHORS Hatano,H., Lampiris,H., Fransen,S., Gupta,S., Huang,W., Hoh,R.,
Martin,J.N., Lalezari,J., Bangsberg,D., Petropoulos,C. and
Deeks,S.G.
TITLE Evolution of integrase resistance during failure of integrase
inhibitor-based antiretroviral therapy.
JOURNAL J. Acquir. Immune Defic. Syndr.. 54(4); 389-93 (2010)
PUBMED 20300008
REFERENCE 2 (bases 1 to 864)
Show all sequences for reference 2
AUTHORS Hatano,H., Lampiris,H., Fransen,S., Gupta,S., Huang,W., Hoh,R.,
Martin,J.N., Lalezari,J., Bangsberg,D., Petropoulos,C. and
Deeks,S.G.
TITLE Direct Submission
JOURNAL Submitted (20-OCT-2009) Medicine/AIDS, UCSF, 995 Potrero Avenue,
Building 80, Ward 84, San Francisco, CA 94110, USA
FEATURES Location/Qualifiers
source 1..864
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="Virus26"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="USA"
/collection_date="06-Sep-2006"
gene <1..>864
/gene="pol"
CDS <1..>864
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="integrase"
/protein_id="ACY70266.1"
/db_xref="GI:263201464"
/translation="FLDGIDKAQDXHXKYHXNWRAMXXDFNLPPVVAKEIVASCDKCQ
LKGEAMHGQVDCSPGIWQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFIL
XLAGRWPVKVIHTDNGPNFISATVKAACWWAGIXQEFGIPYNPQSQGVVESMNKELKK
IIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIXDIIATDIQTKELQKQIT
KIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSEIKVVPRRKAKIIRDYGKQMA
GDDCVASRQDED"
BASE COUNT 330 a 123 c 203 g 183 t 25 other
ORIGIN
1 tttttagatg gratagataa ggcccaagat gamcatgasa aatatcacas taattggaga
61 gcaatggyta rtgattttaa cctgccacct gtagtagcaa aagagatagt agccagctgt
121 gataaatgtc agctaaaagg agaagccatg catggacaag tagactgtag tccaggaata
181 tggcaactag attgyacaca tttagaagga aaaattatcc tggtagcagt tcatgtagcc
241 agtggatata tagaagcaga agtyattcca gcagagacag ggcaggaaac agcatacttt
301 atcttaarrt tagcaggaag atggccagta aaagtaatac atacagacaa tgggccaaat
361 ttcatcagtg ctacagttaa rgcygcctgt tggtgggcag gratcargca ggaatttggc
421 attccctaca atccccaaag tcaaggagta gtrgaatcta tgaayaaaga attaaagaaa
481 attataggac aagtaagaga tcargctgaa caycttaaga cagcagtaca aatggcagta
541 ttcattcaca attttaaaag aaaagggggg attggrggat acagtgcrgg ggaaagaata
601 rtagacataa tagcaacaga catacaaact aaagaactac aaaaacaaat tacaaaaatt
661 caaaattttc gggtttatta cagggacagc agagatccac tttggaaagg accagcaaag
721 cttctctgga aaggtgaagg ggcagtagta atacaagaya atagtgaaat aaaagtrgtg
781 ccaagaagaa aagcaaarat cattagggat tatggmaaac agatggcagg tgatgattgt
841 gtggcaagta gacaggatga ggat
//
last modified: Tue May 31 10:56 2022