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LOCUS	    GQ868870		     630 bp    DNA     linear	VRL 10-OCT-2009
DEFINITION  HIV-1 isolate BW0311B from USA nef protein (nef) gene, partial cds
ACCESSION   GQ868870
VERSION     GQ868870.1 GI:260514121
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 630)
            Show all sequences for reference 1
  AUTHORS   Lamers,S.L., Salemi,M., Galligan,D.C., Morris,A., Gray,R.,
	    Fogel,G., Zhao,L. and McGrath,M.S.
  TITLE     Human immunodeficiency virus-1 evolutionary patterns associated
	    with pathogenic processes in the brain.
  JOURNAL   J. Neurovirol.. 16(3); 230-41 (2010)
  PUBMED    20367240
REFERENCE   2 (bases 1 to 630)
            Show all sequences for reference 2
  AUTHORS   Lamers,S.L., Salemi,M., Galligan,D., Morris,A., Gray,R., Fogel,G.,
	    de Oliveira,T., Zhao,L. and McGrath,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (02-SEP-2009) Department of Laboratory Medicine, Positive
	    Health Program, University of California, San Francisco, San
	    Francisco, CA 94110, USA
FEATURES             Location/Qualifiers
     source	     1..630
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolate="BW0311B"
		     /isolation_source="brain"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="USA"
		     /collection_date="2001"
     gene	     <1..>630
		     /gene="nef"
     CDS	     <1..>630
		     /gene="nef"
		     /codon_start="1"
		     /transl_table="1"
		     /product="nef protein"
		     /protein_id="ACX42771.1"
		     /db_xref="GI:260514122"
		     /translation="GGKWSKRTGDGWPAVRERMRRTEPRRRTEPAAVGVGAASRDLEK
		     HGAITTSNTAATNSDVAWLEAQEDEEVGFPVRPQVPLRPMNYKGALDLSHFLREKGGL
		     EGLVHSQKRQDILDLWVYHTQGYFPDWQNYTPGPGTRFPLTFGWCFKLVPIDPDKVEE
		     ATEGEDNSLLHPMNQHGMDDPEKEVLVWKFDSSLAFHHVAREKHPEYYKD"
BASE COUNT	192 a	 142 c	  177 g    119 t
ORIGIN
       1 ggtggcaagt ggtcaaaacg cactggggat ggatggcctg ctgtaaggga aagaatgcga 
      61 cgcactgagc caaggcgacg cactgagcca gcagcagttg gggtaggagc agcatctaga 
     121 gacctagaaa aacatggggc aatcacaact agcaatacag cagctaccaa tagtgacgtt 
     181 gcctggctag aagcacaaga ggatgaggaa gtgggatttc cagtcagacc tcaggtacct 
     241 ttgagaccaa tgaattacaa gggagcttta gatcttagcc actttttaag agaaaagggg 
     301 ggactggaag ggttagttca ctcccagaaa agacaggata tccttgatct gtgggtctac 
     361 cacacacaag gctacttccc tgattggcag aactacacac cagggccagg gactcgattt 
     421 cccctgacct ttggatggtg cttcaagcta gtaccaattg acccagacaa ggtagaagag 
     481 gccactgaag gagaggacaa cagcttgtta caccctatga accagcatgg gatggatgac 
     541 ccagagaaag aagtgttagt gtggaagttt gacagcagcc tcgcctttca ccacgtagcc 
     601 cgagagaaac atccggagta ctacaaggac 
//
last modified: Tue May 31 10:56 2022


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