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LOCUS GQ859368 1306 bp DNA linear VRL 06-OCT-2009
DEFINITION HIV-1 clone PP63T0399cent4-1 from USA vif protein (vif) gene,
partial cds; and vpr protein (vpr) and vpu protein (vpu) genes,
complete cds
ACCESSION GQ859368
VERSION GQ859368.1 GI:260179619
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1306)
Show all sequences for reference 1
AUTHORS Liu,Y., Woodward,A., Zhu,H., Andrus,T., McNevin,J., Lee,J.,
Mullins,J.I., Corey,L., McElrath,M.J. and Zhu,T.
TITLE Preinfection human immunodeficiency virus (HIV)-specific cytotoxic
T lymphocytes failed to prevent HIV type 1 infection from strains
genetically unrelated to viruses in long-term exposed partners
JOURNAL J. Virol. 83 (20), 10821-10829 (2009)
PUBMED 19706711
REFERENCE 2 (bases 1 to 1306)
Show all sequences for reference 2
AUTHORS Liu,Y., Woodward,A., Zhu,H., Andrus,T., McNevin,J., Lee,J.,
Mullins,J.I., Corey,L., McElrath,M.J. and Zhu,T.
TITLE Direct Submission
JOURNAL Submitted (31-AUG-2009) Laboratory Medicine, University of
Washington, Campus Box 358070, Seattle, WA 98195, USA
FEATURES Location/Qualifiers
source 1..1306
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolation_source="PP63 T cells"
/host="Homo sapiens"
/db_xref="taxon:11676"
/clone="PP63T0399cent4-1"
/country="USA"
/collection_date="Mar-1999"
gene <1..549
/gene="vif"
CDS <1..549
/gene="vif"
/codon_start="1"
/transl_table="1"
/product="vif protein"
/protein_id="ACX34472.1"
/db_xref="GI:260179620"
/translation="WQVDRMRIRTWKSLVKHHMYISRKAKGWFYRHHYESTHPRISSE
VHIPMGEAKLVVTTYWGLHTGEREWHLGQGVSIEWRKRRYSTQVDPNLADQLIHRYYF
DCFSEAAIRHVILGHRVSPRCEYPAGHNQVQSLQYLALAALITPKKIKPPLPSVAKLT
EDRWNKPQKTKGHRGSHTISGH"
gene 489..779
/gene="vpr"
CDS 489..779
/gene="vpr"
/codon_start="1"
/transl_table="1"
/product="vpr protein"
/protein_id="ACX34473.1"
/db_xref="GI:260179621"
/translation="MEQAPEDQGPQREPYHQWTLELLEELKNEAVRHFPRPWLHGLGQ
YIYETYGDTWAGVEALLRILQQLLFIHFRLGCRHSRIGINPQRRARNGARRS"
gene 991..1236
/gene="vpu"
CDS 991..1236
/gene="vpu"
/codon_start="1"
/transl_table="1"
/product="vpu protein"
/protein_id="ACX34474.1"
/db_xref="GI:260179622"
/translation="MQSLGILAIVGLVVALILAIVVWTIVGIEYRKILRQRKIDRLID
RIRERAEDSGNESEGDQEELSALVERGHLAPWDINDL"
BASE COUNT 444 a 230 c 320 g 312 t
ORIGIN
1 tggcaagtag acaggatgag gattagaaca tggaaaagtt tagtaaaaca ccatatgtat
61 atttcaagaa aagctaaggg atggttttat agacatcatt atgaaagcac tcatccaaga
121 ataagttcag aagtacacat cccaatgggg gaagctaaat tggtagtaac aacatattgg
181 ggtctgcata caggagaaag agaatggcat ttgggtcagg gagtatccat agaatggagg
241 aaaaggagat atagcacaca agtagaccct aacctagcag accaactaat tcatcggtat
301 tactttgatt gtttttcaga agctgctata agacatgtca tattaggaca tagagttagt
361 cctaggtgtg aatatccagc aggacataac caggtacaat ctctacagta cttggcacta
421 gcggcattaa taacaccaaa aaagataaag ccacccctgc ctagtgttgc aaaactgaca
481 gaggatagat ggaacaagcc ccagaagacc aagggccaca gagggagcca taccatcagt
541 ggacactaga gcttctagaa gaacttaaga atgaagctgt tagacatttt cctaggcctt
601 ggcttcatgg cttagggcaa tatatctatg aaacttatgg ggatacttgg gcaggagtgg
661 aagccttact aagaattctg caacaactgc tgtttattca tttcagactt gggtgtcgac
721 atagcagaat aggcattaat ccacagagga gagcaaggaa tggagcccgt agatcctagg
781 ctagagccct ggaagcatcc aggaagtcag cctaggactg cttgtacaac ttgctattgt
841 aaaaggtgtt gctttcattg ccaagtgtgt ttcataaaaa aaggcttagg catctcctat
901 ggcaggaaga agcggagaca acgacgcaga cctcctccag acactaaggc tcatcaggct
961 cctttaccaa agcagtaagt agtatatgta atgcaatctt taggaatatt agctatagta
1021 ggattagtag tagcattaat actagcaata gttgtgtgga ccatagtagg catagaatat
1081 aggaaaatat taagacaaag aaaaatagat aggctaattg atagaataag agaaagagca
1141 gaagacagtg gcaatgagag tgagggggac caggaagaat tatcagctct tgtggagagg
1201 gggcaccttg ctccttggga tattaatgat ctgtagtgct gcagacaatt tttgggtcac
1261 agtctattat ggggtacctg tgtggaaaga agcgaccacc actcta
//
last modified: Tue May 31 10:56 2022