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LOCUS	    GQ859368		    1306 bp    DNA     linear	VRL 06-OCT-2009
DEFINITION  HIV-1 clone PP63T0399cent4-1 from USA vif protein (vif) gene,
	    partial cds; and vpr protein (vpr) and vpu protein (vpu) genes,
	    complete cds
ACCESSION   GQ859368
VERSION     GQ859368.1 GI:260179619
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1306)
            Show all sequences for reference 1
  AUTHORS   Liu,Y., Woodward,A., Zhu,H., Andrus,T., McNevin,J., Lee,J.,
	    Mullins,J.I., Corey,L., McElrath,M.J. and Zhu,T.
  TITLE     Preinfection human immunodeficiency virus (HIV)-specific cytotoxic
	    T lymphocytes failed to prevent HIV type 1 infection from strains
	    genetically unrelated to viruses in long-term exposed partners
  JOURNAL   J. Virol. 83 (20), 10821-10829 (2009)
  PUBMED    19706711
REFERENCE   2 (bases 1 to 1306)
            Show all sequences for reference 2
  AUTHORS   Liu,Y., Woodward,A., Zhu,H., Andrus,T., McNevin,J., Lee,J.,
	    Mullins,J.I., Corey,L., McElrath,M.J. and Zhu,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (31-AUG-2009) Laboratory Medicine, University of
	    Washington, Campus Box 358070, Seattle, WA 98195, USA
FEATURES             Location/Qualifiers
     source	     1..1306
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolation_source="PP63 T cells"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /clone="PP63T0399cent4-1"
		     /country="USA"
		     /collection_date="Mar-1999"
     gene	     <1..549
		     /gene="vif"
     CDS	     <1..549
		     /gene="vif"
		     /codon_start="1"
		     /transl_table="1"
		     /product="vif protein"
		     /protein_id="ACX34472.1"
		     /db_xref="GI:260179620"
		     /translation="WQVDRMRIRTWKSLVKHHMYISRKAKGWFYRHHYESTHPRISSE
		     VHIPMGEAKLVVTTYWGLHTGEREWHLGQGVSIEWRKRRYSTQVDPNLADQLIHRYYF
		     DCFSEAAIRHVILGHRVSPRCEYPAGHNQVQSLQYLALAALITPKKIKPPLPSVAKLT
		     EDRWNKPQKTKGHRGSHTISGH"
     gene	     489..779
		     /gene="vpr"
     CDS	     489..779
		     /gene="vpr"
		     /codon_start="1"
		     /transl_table="1"
		     /product="vpr protein"
		     /protein_id="ACX34473.1"
		     /db_xref="GI:260179621"
		     /translation="MEQAPEDQGPQREPYHQWTLELLEELKNEAVRHFPRPWLHGLGQ
		     YIYETYGDTWAGVEALLRILQQLLFIHFRLGCRHSRIGINPQRRARNGARRS"
     gene	     991..1236
		     /gene="vpu"
     CDS	     991..1236
		     /gene="vpu"
		     /codon_start="1"
		     /transl_table="1"
		     /product="vpu protein"
		     /protein_id="ACX34474.1"
		     /db_xref="GI:260179622"
		     /translation="MQSLGILAIVGLVVALILAIVVWTIVGIEYRKILRQRKIDRLID
		     RIRERAEDSGNESEGDQEELSALVERGHLAPWDINDL"
BASE COUNT	444 a	 230 c	  320 g    312 t
ORIGIN
       1 tggcaagtag acaggatgag gattagaaca tggaaaagtt tagtaaaaca ccatatgtat 
      61 atttcaagaa aagctaaggg atggttttat agacatcatt atgaaagcac tcatccaaga 
     121 ataagttcag aagtacacat cccaatgggg gaagctaaat tggtagtaac aacatattgg 
     181 ggtctgcata caggagaaag agaatggcat ttgggtcagg gagtatccat agaatggagg 
     241 aaaaggagat atagcacaca agtagaccct aacctagcag accaactaat tcatcggtat 
     301 tactttgatt gtttttcaga agctgctata agacatgtca tattaggaca tagagttagt 
     361 cctaggtgtg aatatccagc aggacataac caggtacaat ctctacagta cttggcacta 
     421 gcggcattaa taacaccaaa aaagataaag ccacccctgc ctagtgttgc aaaactgaca 
     481 gaggatagat ggaacaagcc ccagaagacc aagggccaca gagggagcca taccatcagt 
     541 ggacactaga gcttctagaa gaacttaaga atgaagctgt tagacatttt cctaggcctt 
     601 ggcttcatgg cttagggcaa tatatctatg aaacttatgg ggatacttgg gcaggagtgg 
     661 aagccttact aagaattctg caacaactgc tgtttattca tttcagactt gggtgtcgac 
     721 atagcagaat aggcattaat ccacagagga gagcaaggaa tggagcccgt agatcctagg 
     781 ctagagccct ggaagcatcc aggaagtcag cctaggactg cttgtacaac ttgctattgt 
     841 aaaaggtgtt gctttcattg ccaagtgtgt ttcataaaaa aaggcttagg catctcctat 
     901 ggcaggaaga agcggagaca acgacgcaga cctcctccag acactaaggc tcatcaggct 
     961 cctttaccaa agcagtaagt agtatatgta atgcaatctt taggaatatt agctatagta 
    1021 ggattagtag tagcattaat actagcaata gttgtgtgga ccatagtagg catagaatat 
    1081 aggaaaatat taagacaaag aaaaatagat aggctaattg atagaataag agaaagagca 
    1141 gaagacagtg gcaatgagag tgagggggac caggaagaat tatcagctct tgtggagagg 
    1201 gggcaccttg ctccttggga tattaatgat ctgtagtgct gcagacaatt tttgggtcac 
    1261 agtctattat ggggtacctg tgtggaaaga agcgaccacc actcta
//
last modified: Tue May 31 10:56 2022


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