View NCBI entry Download GenBank file Graphics View Download GFF3 File
LOCUS GQ485393 2559 bp DNA linear VRL 22-SEP-2009
DEFINITION HIV-1 clone Z185FPL10JUL04ENV4.1 from Zambia envelope glycoprotein
(env) gene, complete cds
ACCESSION GQ485393
VERSION GQ485393.1 GI:258643160
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 2559)
Show all sequences for reference 1
AUTHORS Rong,R., Li,B., Lynch,R.M., Haaland,R.E., Murphy,M.K., Mulenga,J.,
Allen,S.A., Pinter,A., Shaw,G.M., Hunter,E., Robinson,J.E.,
Gnanakaran,S. and Derdeyn,C.A.
TITLE Escape from autologous neutralizing antibodies in acute/early
subtype C HIV-1 infection requires multiple pathways
JOURNAL PLoS Pathog. 5 (9), E1000594 (2009)
PUBMED 19763269
REFERENCE 2 (bases 1 to 2559)
Show all sequences for reference 2
AUTHORS Rong,R., Li,B., Lynch,R.M., Haaland,R.E., Murphy,M.K., Mulenga,J.,
Allen,S.A., Pinter,A., Shaw,G.M., Hunter,E., Robinson,J.E.,
Gnanakaran,S. and Derdeyn,C.A.
TITLE Direct Submission
JOURNAL Submitted (17-AUG-2009) Pathology and Laboratory Medicine, Emory
University, 954 Gatewood Rd, Atlanta, GA 30329, USA
FEATURES Location/Qualifiers
source 1..2559
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolation_source="plasma"
/host="Homo sapiens"
/db_xref="taxon:11676"
/clone="Z185FPL10JUL04ENV4.1"
/country="Zambia"
/collection_date="10-Jul-2004"
gene 1..2559
/gene="env"
CDS 1..2559
/gene="env"
/codon_start="1"
/transl_table="1"
/product="envelope glycoprotein"
/protein_id="ACV86548.1"
/db_xref="GI:258643161"
/translation="MRVMETSRNCQPWWIWGILGFWMLMICNAEEKLWVTVYYGVPVW
KEAKAPLFCASDAKAYEREVHNVWATHACVPTDPNPQEMILKNVTENFNMWKNDMVDQ
MNEDIISLWDQSLKPCVKLTPLCVTLNCSNFNSTANHTESTNNTSADLKQEIKNCSFY
TTTEIQDKKKTEHALFYKLDIVSLNGNEDGNENSTQYRLINCNTSAVTQACPKVSFDP
IPIHYCAPAGYAILKCNNNTFNGTGPCNNVSTVQCTHGIKPVVSTQLLLNGSLAEKEI
IIRSENLTDSVKTIIVQFNKSVEIVCVRPNNNTRKSVRIGPGQTFYATGDIIGDIRQA
HCNISAQPWNDTLQEVGKKLKEQFPNKTIKFAPSSGGDLEITTHSFNCRGEFFYCNTS
QLFNGTYMANSTNSNLNGTITLPCRIKQIINLWQKVGRAVYAPPIAGNITCKSNITGL
LLTHDGSNDSTVIFRPGGGDMRDNWRSELYKYKVVEIRPLGVAPTEAKRRVVEREKRA
VGIGAVFFGFLGAAGSTMGAASITLTVQARQLLSGIVQQQSNLLRAIEAQQHMLQLTV
WGIKQLQTRVLAIERYLKDQQLLGLWGCSGKLICTTNVPWNHSWSHKTRDEIWENMTW
MQWDREINNYTGTIYRLLEDSQNQQEKNERDLLALDSWNNLWSWFDISRWLWYIKIFI
MIVGGLIGLRIIFAVLSVVNRVRQGYSPLSFQTLIPNPRGPDRPRGIEEEGGEQDRDR
SVRLVNGFLAIVWDDLRSLCLFSYHQLRDFILIVARAVELLGRRGWEALKYLGSLVQY
WGLELKKSAISLLDTIAITVAEGTDRIIELTQRIWRAILNIPRRIRQGFEAALL"
BASE COUNT 901 a 432 c 596 g 630 t
ORIGIN
1 atgagagtga tggagacatc gaggaattgt caaccatggt ggatatgggg catcttaggc
61 ttttggatgt taatgatttg taatgcagag gagaaattgt gggtcacagt ctattatggg
121 gtacctgtgt ggaaagaggc aaaagctcct ctattttgtg catcagatgc taaagcctat
181 gagagagaag tacataatgt ttgggctaca catgcctgtg tacccacaga ccccaaccca
241 caagaaatga ttttgaaaaa tgtaacagaa aattttaata tgtggaaaaa tgacatggtg
301 gatcagatga atgaggatat aatcagttta tgggatcaaa gcttaaagcc atgtgtaaag
361 ttgaccccac tctgtgtcac tttaaactgt agtaacttca atagtactgc taaccacact
421 gagagtacta ataatacctc tgctgatctt aagcaagaaa taaaaaattg ctctttctat
481 acaaccacag aaatacaaga taagaagaag actgaacatg cactttttta taaacttgat
541 atagtatcac ttaatgggaa tgaagatggg aatgaaaatt ctactcaata tagattaata
601 aattgtaata cctcagccgt aacacaagcc tgtccaaagg tctcttttga cccaattcct
661 atacactatt gcgctccagc tggttatgcg attctgaagt gtaataacaa tacattcaat
721 ggaacaggac catgcaacaa cgtcagcaca gtacaatgta cacatggaat taaaccagtg
781 gtatcaactc aactactgtt gaatggtagt ctagcagaaa aggagataat aattagatct
841 gaaaatctga cagacagtgt caaaacaata atagtacagt ttaacaaatc tgtagaaatt
901 gtgtgtgtaa ggcccaacaa taatacaagg aaaagtgtga gaataggacc aggacaaaca
961 ttctatgcaa caggagacat aataggagat ataagacaag cacattgtaa cattagtgca
1021 cagccatgga atgacacttt gcaagaggta ggtaaaaaat taaaagaaca attccctaat
1081 aaaaccataa agtttgcacc atcctcagga ggggacctag aaattacaac acatagcttt
1141 aattgtagag gagaattttt ctattgcaat acatcacaat tgtttaatgg cacatacatg
1201 gctaatagca caaacagtaa tttaaatgga accatcacac tcccatgcag gataaaacaa
1261 attataaact tgtggcagaa ggtaggacga gcagtgtatg ccccccccat tgcaggaaac
1321 ataacatgta aatcaaatat cacaggacta ctattgacac atgatgggag caatgattca
1381 acagtaatat tcagacctgg aggaggagat atgagggaca attggagaag tgaattatat
1441 aaatataaag tagtagaaat taggccatta ggagtagcac caactgaggc aaaaaggaga
1501 gtggtggaga gagaaaaaag agcagtggga ataggagctg tgttctttgg gttcttggga
1561 gctgcaggaa gcactatggg cgcagcatca ataacgctga cggtacaggc cagacaattg
1621 ttgtctggta tagtgcaaca gcaaagtaat ttgctgaggg ctatagaggc gcaacagcat
1681 atgttgcaac tcacggtctg gggcattaag cagctccaga caagagtcct ggctatagaa
1741 agatacctaa aggatcaaca gctcctaggg ctttggggct gctctggaaa actcatctgc
1801 accactaatg tgccttggaa ccatagttgg agtcataaaa ctagagatga aatttgggag
1861 aacatgactt ggatgcagtg ggatagagaa attaataatt acacaggcac aatatacagg
1921 ttgcttgaag actcgcaaaa ccagcaggag aaaaatgaaa gagatttact agcattggac
1981 agttggaaca atctgtggag ttggtttgac atatcaagat ggctgtggta tataaagata
2041 tttataatga tagtaggagg cttgataggg ttaagaataa tttttgcagt gctctctgta
2101 gtgaatagag ttaggcaggg atactcacct ttgtcatttc agacccttat cccaaacccg
2161 aggggacccg acaggcccag aggaatcgaa gaagaaggtg gagagcaaga cagagacaga
2221 tccgtgcgat tagtgaacgg attcttagcg attgtctggg acgatctgcg gagcctgtgc
2281 ctcttcagct accaccaatt gagagacttc atattgattg tggcgagagc agtggaactt
2341 ctgggacgca gagggtggga agcccttaag tatttgggaa gtcttgtgca gtattggggt
2401 ctagagctaa aaaagagtgc tattagtctg cttgatacca tagcaataac agtagctgaa
2461 ggaacagata gaattataga attaacacaa agaatttgga gagctatcct taacatacct
2521 agaagaataa gacagggctt tgaagcagca ttgctataa
//
last modified: Tue May 31 10:56 2022