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LOCUS GQ462121 1300 bp RNA linear VRL 07-NOV-2009
DEFINITION HIV-1 isolate 71631 from United Kingdom pol protein (pol) gene,
partial cds
ACCESSION GQ462121
VERSION GQ462121.1 GI:262287969
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1300)
Show all sequences for reference 1
AUTHORS Hughes,G.J., Fearnhill,E., Dunn,D., Lycett,S.J., Rambaut,A. and
Leigh Brown,A.J.
CONSRTM UK HIV Drug Resistance Collaboration
TITLE Molecular phylodynamics of the heterosexual HIV epidemic in the
United Kingdom
JOURNAL PLoS Pathog. 5 (9), E1000590 (2009)
PUBMED 19779560
REFERENCE 2 (bases 1 to 1300)
Show all sequences for reference 2
AUTHORS Hughes,G.J., Fearnhill,E., Dunn,D., Lycett,S.J., Rambaut,A. and
Leigh Brown,A.J.
CONSRTM UK HIV Drug Resistance Collaboration
TITLE Direct Submission
JOURNAL Submitted (07-AUG-2009) Institute for Evolutionary Biology,
University of Edinburgh, West Mains Road, Edinburgh EH9 3JT,
Scotland
FEATURES Location/Qualifiers
source 1..1300
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="71631"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="United Kingdom"
gene <1..>1300
/gene="pol"
CDS <1..>1300
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="ACY41771.1"
/db_xref="GI:262287970"
/translation="PQITLWQRPLVSIKVGGQIKEALLDTGADDTVLEEINLPGKWKP
KMIGGIGGFIKVRQYDQVLIEICGKKTIGTVLVGPTPVNIIGRNMLTQLGCTLNFPIS
PIETVPVKLKPGMDGPKVKQWPLTEEKIKALTAICAEMEKEGKIEKIGPENPYNTPVF
AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
LDEGFRKYTAFTIPSINNETPGXRYQYNVLPQGWKGSPAIFQSSMTRILEPFRTQNPE
IVIYQYMDDLYVGSDLEIGQHRAKIEELREHLLXWGXTTPDKKHQKEPPFLWMGYELH
PDKWTVQPIKLPEKDSWTVNDIQKLVGKLNWASQIYPGIRVKYLCKLLRGAKGLTDIV
PLTEEAELELAENREILRKPVHGVYYDPSKDLIAEIQKQGH"
BASE COUNT 508 a 208 c 280 g 293 t 11 other
ORIGIN
1 cctcaaatca ctctttggca acgacccctt gtctcaataa aagtaggggg tcagataaaa
61 gargctctct tagacacagg agcagatgat acagtattag aagaaataaa tttgccagga
121 aaatggaaac caaaaatgat aggaggaatt ggaggtttta tcaaagtaag acagtatgat
181 caagtactta tagaaatttg tggaaaaaag actataggta cagtattagt agggcctaca
241 cctgtcaaca taattggaag aaatatgttg actcarcttg gatgcactct aaattttcca
301 attagtccca ttgaaactgt accagtaaaa ttgaagccag gaatggatgg cccaaaggtt
361 aaacaatggc cattgacaga agagaaaata aaagcattaa cagcaatttg tgcagaaatg
421 gagaaggaag gaaaaattga aaaaattggg cctgaaaatc catataacac tccagtattt
481 gccataaaaa agaaggacag tactaagtgg agaaaattag tagatttyag ggaactcaat
541 aaaagaacyc aagacttttg ggaagttcaa ttaggaatac cacacccagc agggttaaaa
601 aagaaaaaat cagtgacggt actrgatgtg ggggatgcat atttttcagt ccctttagat
661 gaaggsttca ggaaatatac tgcattcacc atacctagta taaacaatga aacaccaggg
721 aytagatatc aatataatgt gcttccacag ggatggaaag gatcaccagc aatattccag
781 agtagcatga caagaatctt agagcccttt agaacacaaa atccagaaat agtcatctat
841 caatatatgg atgacttata tgtaggatct gayttagaaa tagggcaaca tagagcaaaa
901 atagaggagt taagagaaca tctattaarg tggggaytta ccacaccaga caagaaacat
961 cagaaagaac ccccatttct ttggatgggg tatgaactcc atcctgacaa atggacagta
1021 cagcctataa agctgccaga aaaggatagc tggactgtca atgatataca gaagttagtg
1081 ggaaaattaa actgggcaag tcagatttac ccagggatta gagtaaagta tctttgtaaa
1141 ctccttaggg gggccaaagg rctaacagac atagtaccac taactgaaga ggcagaatta
1201 gaattggcag agaacaggga aattctaaga aaaccagtac atggagtata ttatgaccca
1261 tcaaaagact tgatagctga aatacagaaa caggggcatg
//
last modified: Tue May 31 10:56 2022