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LOCUS	    GQ462121		    1300 bp    RNA     linear	VRL 07-NOV-2009
DEFINITION  HIV-1 isolate 71631 from United Kingdom pol protein (pol) gene,
	    partial cds
ACCESSION   GQ462121
VERSION     GQ462121.1 GI:262287969
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1300)
            Show all sequences for reference 1
  AUTHORS   Hughes,G.J., Fearnhill,E., Dunn,D., Lycett,S.J., Rambaut,A. and
	    Leigh Brown,A.J.
  CONSRTM   UK HIV Drug Resistance Collaboration
  TITLE     Molecular phylodynamics of the heterosexual HIV epidemic in the
	    United Kingdom
  JOURNAL   PLoS Pathog. 5 (9), E1000590 (2009)
  PUBMED    19779560
REFERENCE   2 (bases 1 to 1300)
            Show all sequences for reference 2
  AUTHORS   Hughes,G.J., Fearnhill,E., Dunn,D., Lycett,S.J., Rambaut,A. and
	    Leigh Brown,A.J.
  CONSRTM   UK HIV Drug Resistance Collaboration
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2009) Institute for Evolutionary Biology,
	    University of Edinburgh, West Mains Road, Edinburgh EH9 3JT,
	    Scotland
FEATURES             Location/Qualifiers
     source	     1..1300
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="71631"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="United Kingdom"
     gene	     <1..>1300
		     /gene="pol"
     CDS	     <1..>1300
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="ACY41771.1"
		     /db_xref="GI:262287970"
		     /translation="PQITLWQRPLVSIKVGGQIKEALLDTGADDTVLEEINLPGKWKP
		     KMIGGIGGFIKVRQYDQVLIEICGKKTIGTVLVGPTPVNIIGRNMLTQLGCTLNFPIS
		     PIETVPVKLKPGMDGPKVKQWPLTEEKIKALTAICAEMEKEGKIEKIGPENPYNTPVF
		     AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
		     LDEGFRKYTAFTIPSINNETPGXRYQYNVLPQGWKGSPAIFQSSMTRILEPFRTQNPE
		     IVIYQYMDDLYVGSDLEIGQHRAKIEELREHLLXWGXTTPDKKHQKEPPFLWMGYELH
		     PDKWTVQPIKLPEKDSWTVNDIQKLVGKLNWASQIYPGIRVKYLCKLLRGAKGLTDIV
		     PLTEEAELELAENREILRKPVHGVYYDPSKDLIAEIQKQGH"
BASE COUNT	508 a	 208 c	  280 g    293 t     11 other
ORIGIN
       1 cctcaaatca ctctttggca acgacccctt gtctcaataa aagtaggggg tcagataaaa 
      61 gargctctct tagacacagg agcagatgat acagtattag aagaaataaa tttgccagga 
     121 aaatggaaac caaaaatgat aggaggaatt ggaggtttta tcaaagtaag acagtatgat 
     181 caagtactta tagaaatttg tggaaaaaag actataggta cagtattagt agggcctaca 
     241 cctgtcaaca taattggaag aaatatgttg actcarcttg gatgcactct aaattttcca 
     301 attagtccca ttgaaactgt accagtaaaa ttgaagccag gaatggatgg cccaaaggtt 
     361 aaacaatggc cattgacaga agagaaaata aaagcattaa cagcaatttg tgcagaaatg 
     421 gagaaggaag gaaaaattga aaaaattggg cctgaaaatc catataacac tccagtattt 
     481 gccataaaaa agaaggacag tactaagtgg agaaaattag tagatttyag ggaactcaat 
     541 aaaagaacyc aagacttttg ggaagttcaa ttaggaatac cacacccagc agggttaaaa 
     601 aagaaaaaat cagtgacggt actrgatgtg ggggatgcat atttttcagt ccctttagat 
     661 gaaggsttca ggaaatatac tgcattcacc atacctagta taaacaatga aacaccaggg 
     721 aytagatatc aatataatgt gcttccacag ggatggaaag gatcaccagc aatattccag 
     781 agtagcatga caagaatctt agagcccttt agaacacaaa atccagaaat agtcatctat 
     841 caatatatgg atgacttata tgtaggatct gayttagaaa tagggcaaca tagagcaaaa 
     901 atagaggagt taagagaaca tctattaarg tggggaytta ccacaccaga caagaaacat 
     961 cagaaagaac ccccatttct ttggatgggg tatgaactcc atcctgacaa atggacagta 
    1021 cagcctataa agctgccaga aaaggatagc tggactgtca atgatataca gaagttagtg 
    1081 ggaaaattaa actgggcaag tcagatttac ccagggatta gagtaaagta tctttgtaaa 
    1141 ctccttaggg gggccaaagg rctaacagac atagtaccac taactgaaga ggcagaatta 
    1201 gaattggcag agaacaggga aattctaaga aaaccagtac atggagtata ttatgaccca 
    1261 tcaaaagact tgatagctga aatacagaaa caggggcatg 
//
last modified: Tue May 31 10:56 2022


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