View NCBI entry Download GenBank file Graphics View Download GFF3 File
LOCUS GQ462101 1497 bp RNA linear VRL 07-NOV-2009
DEFINITION HIV-1 isolate 70299 from United Kingdom pol protein (pol) gene,
partial cds
ACCESSION GQ462101
VERSION GQ462101.1 GI:262287930
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1497)
Show all sequences for reference 1
AUTHORS Hughes,G.J., Fearnhill,E., Dunn,D., Lycett,S.J., Rambaut,A. and
Leigh Brown,A.J.
CONSRTM UK HIV Drug Resistance Collaboration
TITLE Molecular phylodynamics of the heterosexual HIV epidemic in the
United Kingdom
JOURNAL PLoS Pathog. 5 (9), E1000590 (2009)
PUBMED 19779560
REFERENCE 2 (bases 1 to 1497)
Show all sequences for reference 2
AUTHORS Hughes,G.J., Fearnhill,E., Dunn,D., Lycett,S.J., Rambaut,A. and
Leigh Brown,A.J.
CONSRTM UK HIV Drug Resistance Collaboration
TITLE Direct Submission
JOURNAL Submitted (07-AUG-2009) Institute for Evolutionary Biology,
University of Edinburgh, West Mains Road, Edinburgh EH9 3JT,
Scotland
FEATURES Location/Qualifiers
source 1..1497
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="70299"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="United Kingdom"
gene <1..>1497
/gene="pol"
CDS <1..>1497
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="ACY41752.1"
/db_xref="GI:262287931"
/translation="PQITLWQRPLVSIKVGGQIKEALLDTGADDTVLEEINLPGKWKP
KMIGGIGGFIKVXQYDQIVIXICGKKAIGTVLVGPTPVNIIGRNMLTQLGCTLNFPIS
PIETVPVKLKPGMDGPKVKQWPLTEEKIKALTAICEEMEKEGKISKIGPENPYNTPVF
AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPSGLKKKKSVTVLDVGDAYFSVP
LDESFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQCSMTKILEPFRAQNPE
IVIYQYMDDLYVGSDLEIGQHRAKIEELREHLLRWGFTTPDKKHQKEPPFLWMGYELH
PDKWTVQPIQLPDKESWTVNDIQKLVGKLNWASQIYPGIKVKQLCKLLRGAKALTDVV
PLTEEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGHDQWTYQIYQEPFKNLKT
GKYAKRRTAHTNDVKKLTEVVQKVAMESIVIWGKTPKFRLPIQKETWEA"
BASE COUNT 592 a 244 c 326 g 329 t 6 other
ORIGIN
1 cctcaaatca ctctttggca gcgacccctt gtctcaataa aagtaggggg ccagataaag
61 gaggctctct tagatacagg agcagatgat acagtattag aagaaataaa tttgccagga
121 aaatggaaac caaaaatgat aggaggaatt ggaggtttta tcaaagtaar acagtatgat
181 caaatagtta tagamatttg tgggaaaaag gctataggta cagtactagt agggcccaca
241 cctgtcaaca taattggaag aaatatgttg actcaacttg gatgtacact aaattttcca
301 attagtccca ttgaaactgt accagtaaaa ttgaagccag gaatggatgg cccaaaagtg
361 aaacaatggc cattgacaga agaaaaaata aaagcactaa cagcaatttg tgaagaaatg
421 gagaaggaag gaaaaatttc aaaaattggg cctgaaaatc catataacac tccagtattt
481 gccataaaaa agaaggacag taccaagtgg agaaaattag twgatttcag ggaactcaat
541 aaaagaactc aagayttttg ggaagttcaa ttaggaatac cacacccatc agggttaaaa
601 aagaaaaaat cagtgacagt actggatgtg ggggatgcat atttctcagt tcctttagat
661 gaaagtttca gaaaatatac tgcattcacm atacctagta caaacaatga aacaccaggg
721 attagatatc aatacaatgt gcttccacag ggatggaaag gatcaccagc aatattccag
781 tgtagcatga caaaaatytt agagcccttt agggcacaaa acccagaaat agttatctat
841 caatatatgg atgacttgta tgtaggatct gatttagaaa tagggcaaca tagagcaaaa
901 atagaggagt taagagaaca cctattgaga tggggattta ccacaccaga caagaaacat
961 cagaaagaac ccccatttct ttggatgggg tatgaactcc atcctgataa gtggacagta
1021 cagcctatac agttaccaga caaggagagc tggactgtca atgatataca gaaattagtg
1081 gggaaattaa attgggcaag tcagatttac ccagggatta aagtaaagca actgtgtaaa
1141 ctccttaggg gagccaaagc actaacagat gtagtaccac tgactgaaga agcagaatta
1201 gaattggcag agaacaggga aattctaaaa gaaccagtac atggggtata ttatgaccca
1261 tcaaaagact taatagctga aatacagaaa caggggcatg accagtggac atatcaaatt
1321 taccaagaac cattcaaaaa tctgaaaaca gggaaatatg caaaaaggag gactgcccac
1381 actaatgatg taaagaagct aacagaggta gtgcaaaagg tagccatgga aagcatagta
1441 atatggggaa aaactcctaa atttaggtta cccattcaaa aggaaacatg ggaggcg
//
last modified: Tue May 31 10:56 2022