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LOCUS GQ462084 1302 bp RNA linear VRL 07-NOV-2009
DEFINITION HIV-1 isolate 69410 from United Kingdom pol protein (pol) gene,
partial cds
ACCESSION GQ462084
VERSION GQ462084.1 GI:262287897
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1302)
Show all sequences for reference 1
AUTHORS Hughes,G.J., Fearnhill,E., Dunn,D., Lycett,S.J., Rambaut,A. and
Leigh Brown,A.J.
CONSRTM UK HIV Drug Resistance Collaboration
TITLE Molecular phylodynamics of the heterosexual HIV epidemic in the
United Kingdom
JOURNAL PLoS Pathog. 5 (9), E1000590 (2009)
PUBMED 19779560
REFERENCE 2 (bases 1 to 1302)
Show all sequences for reference 2
AUTHORS Hughes,G.J., Fearnhill,E., Dunn,D., Lycett,S.J., Rambaut,A. and
Leigh Brown,A.J.
CONSRTM UK HIV Drug Resistance Collaboration
TITLE Direct Submission
JOURNAL Submitted (07-AUG-2009) Institute for Evolutionary Biology,
University of Edinburgh, West Mains Road, Edinburgh EH9 3JT,
Scotland
FEATURES Location/Qualifiers
source 1..1302
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="69410"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="United Kingdom"
gene <1..>1302
/gene="pol"
CDS <1..>1302
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="ACY41736.1"
/db_xref="GI:262287898"
/translation="PQITLWQRPLVTVRIGGQLIEALLDTGADDPVLXQIDLPGKWKP
KMIGGIGGFIKVXQYDQILIEIEGKKAIGTVLVGPTPINIIGRNMLTQIGCTLNFPIS
PIETVPVKLKPGMDGPKVKQWPLTEEKIKALTEICTDMEKEGKISRIGPENPYNTPIF
AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
LDESFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRTNNPE
IVIYQYMDDLYVGSDLEIGQHRAKIEELRNHLLKWGFTTPDKKHQKEPPFLWMGYELH
PDKWTVQPIQLPNKESWTVNDIQKLVGKLNWASQIYPGIKVKQLCKLLRGAKALTDIV
PLTKEAELELAENREILKEPVHGVYYDPSKDLIAEVQKQGLG"
BASE COUNT 521 a 218 c 268 g 293 t 2 other
ORIGIN
1 cctcaaatca ctctttggca acgacccctg gtcacagtaa gaataggggg acaactaata
61 gaagctctat tagacacagg agcagatgat ccagtattag amcagataga tttgccaggg
121 aaatggaaac caaaaatgat agggggaatt ggaggattta tcaaagtaaa mcagtatgat
181 caaatactta tagaaattga aggaaaaaag gctataggga cagtactagt aggacctaca
241 cctatcaaca taattggaag aaatatgttg actcagattg gttgtacttt aaattttcca
301 attagtccta ttgagactgt accagtaaaa ttaaaaccag gaatggatgg cccaaaagtt
361 aaacaatggc cattgacaga agagaagata aaagcattaa cagaaatttg tacagatatg
421 gaaaaggaag gaaaaatttc aagaattggg cctgaaaatc catacaacac tccaatattt
481 gccataaaga aaaaagacag tactaaatgg agaaagttgg tagatttcag agagctcaat
541 aaaagaactc aagacttctg ggaggtccaa ttaggcatac ctcatcccgc gggtttaaaa
601 aagaaaaaat cagtaacagt actagatgtg ggagatgcat atttttcagt tcccttagat
661 gaaagcttta gaaaatatac agcattcact ataccaagta taaataatga gaccccaggg
721 attagatatc agtacaatgt gctaccacag gggtggaaag gctcaccagc aatatttcag
781 agtagcatga caaaaatctt agaacccttt agaacaaata atccagaaat agtgatctac
841 cagtatatgg atgatttata tgtaggatct gacttagaaa taggacagca tagagcaaaa
901 atagaggagt taagaaatca tctactgaaa tggggattta ccacaccaga caaaaaacat
961 cagaaagaac ctccatttct ttggatggga tatgagctcc atcctgacaa atggacggta
1021 caacctatac agctgccaaa caaggaaagc tggactgtca atgatataca aaaattagtg
1081 ggaaaactaa attgggcaag tcagatttat ccaggaatta aagtaaagca actatgtaaa
1141 ctccttaggg gggccaaagc actaacagac atagtaccac taactaaaga agcagaatta
1201 gaattggcag agaacaggga aattctaaaa gaacctgtac atggagtcta ctatgaccca
1261 tcaaaagact taatagcaga agtacagaaa caagggctcg gc
//
last modified: Tue May 31 10:56 2022