HIV Databases HIV Databases home HIV Databases home
HIV Sequence Database



Download: ENTIRE SEQUENCE SEQUENCE FRAGMENT start end
Format:  
View NCBI entry		Download GenBank file		Graphics View		Download GFF3 File

LOCUS	    GQ462084		    1302 bp    RNA     linear	VRL 07-NOV-2009
DEFINITION  HIV-1 isolate 69410 from United Kingdom pol protein (pol) gene,
	    partial cds
ACCESSION   GQ462084
VERSION     GQ462084.1 GI:262287897
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1302)
            Show all sequences for reference 1
  AUTHORS   Hughes,G.J., Fearnhill,E., Dunn,D., Lycett,S.J., Rambaut,A. and
	    Leigh Brown,A.J.
  CONSRTM   UK HIV Drug Resistance Collaboration
  TITLE     Molecular phylodynamics of the heterosexual HIV epidemic in the
	    United Kingdom
  JOURNAL   PLoS Pathog. 5 (9), E1000590 (2009)
  PUBMED    19779560
REFERENCE   2 (bases 1 to 1302)
            Show all sequences for reference 2
  AUTHORS   Hughes,G.J., Fearnhill,E., Dunn,D., Lycett,S.J., Rambaut,A. and
	    Leigh Brown,A.J.
  CONSRTM   UK HIV Drug Resistance Collaboration
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2009) Institute for Evolutionary Biology,
	    University of Edinburgh, West Mains Road, Edinburgh EH9 3JT,
	    Scotland
FEATURES             Location/Qualifiers
     source	     1..1302
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="69410"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="United Kingdom"
     gene	     <1..>1302
		     /gene="pol"
     CDS	     <1..>1302
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="ACY41736.1"
		     /db_xref="GI:262287898"
		     /translation="PQITLWQRPLVTVRIGGQLIEALLDTGADDPVLXQIDLPGKWKP
		     KMIGGIGGFIKVXQYDQILIEIEGKKAIGTVLVGPTPINIIGRNMLTQIGCTLNFPIS
		     PIETVPVKLKPGMDGPKVKQWPLTEEKIKALTEICTDMEKEGKISRIGPENPYNTPIF
		     AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
		     LDESFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRTNNPE
		     IVIYQYMDDLYVGSDLEIGQHRAKIEELRNHLLKWGFTTPDKKHQKEPPFLWMGYELH
		     PDKWTVQPIQLPNKESWTVNDIQKLVGKLNWASQIYPGIKVKQLCKLLRGAKALTDIV
		     PLTKEAELELAENREILKEPVHGVYYDPSKDLIAEVQKQGLG"
BASE COUNT	521 a	 218 c	  268 g    293 t      2 other
ORIGIN
       1 cctcaaatca ctctttggca acgacccctg gtcacagtaa gaataggggg acaactaata 
      61 gaagctctat tagacacagg agcagatgat ccagtattag amcagataga tttgccaggg 
     121 aaatggaaac caaaaatgat agggggaatt ggaggattta tcaaagtaaa mcagtatgat 
     181 caaatactta tagaaattga aggaaaaaag gctataggga cagtactagt aggacctaca 
     241 cctatcaaca taattggaag aaatatgttg actcagattg gttgtacttt aaattttcca 
     301 attagtccta ttgagactgt accagtaaaa ttaaaaccag gaatggatgg cccaaaagtt 
     361 aaacaatggc cattgacaga agagaagata aaagcattaa cagaaatttg tacagatatg 
     421 gaaaaggaag gaaaaatttc aagaattggg cctgaaaatc catacaacac tccaatattt 
     481 gccataaaga aaaaagacag tactaaatgg agaaagttgg tagatttcag agagctcaat 
     541 aaaagaactc aagacttctg ggaggtccaa ttaggcatac ctcatcccgc gggtttaaaa 
     601 aagaaaaaat cagtaacagt actagatgtg ggagatgcat atttttcagt tcccttagat 
     661 gaaagcttta gaaaatatac agcattcact ataccaagta taaataatga gaccccaggg 
     721 attagatatc agtacaatgt gctaccacag gggtggaaag gctcaccagc aatatttcag 
     781 agtagcatga caaaaatctt agaacccttt agaacaaata atccagaaat agtgatctac 
     841 cagtatatgg atgatttata tgtaggatct gacttagaaa taggacagca tagagcaaaa 
     901 atagaggagt taagaaatca tctactgaaa tggggattta ccacaccaga caaaaaacat 
     961 cagaaagaac ctccatttct ttggatggga tatgagctcc atcctgacaa atggacggta 
    1021 caacctatac agctgccaaa caaggaaagc tggactgtca atgatataca aaaattagtg 
    1081 ggaaaactaa attgggcaag tcagatttat ccaggaatta aagtaaagca actatgtaaa 
    1141 ctccttaggg gggccaaagc actaacagac atagtaccac taactaaaga agcagaatta 
    1201 gaattggcag agaacaggga aattctaaaa gaacctgtac atggagtcta ctatgaccca 
    1261 tcaaaagact taatagcaga agtacagaaa caagggctcg gc
//
last modified: Tue May 31 10:56 2022


Questions or comments? Contact us at seq-info@lanl.gov.

 
Operated by Triad National Security, LLC for the U.S. Department of Energy's National Nuclear Security Administration
© Copyright Triad National Security, LLC. All Rights Reserved | Disclaimer/Privacy

Dept of Health & Human Services Los Alamos National Institutes of Health