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LOCUS	    GQ462033		    1057 bp    RNA     linear	VRL 07-NOV-2009
DEFINITION  HIV-1 isolate 100252 from United Kingdom pol protein (pol) gene,
	    partial cds
ACCESSION   GQ462033
VERSION     GQ462033.1 GI:262287797
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1057)
            Show all sequences for reference 1
  AUTHORS   Hughes,G.J., Fearnhill,E., Dunn,D., Lycett,S.J., Rambaut,A. and
	    Leigh Brown,A.J.
  CONSRTM   UK HIV Drug Resistance Collaboration
  TITLE     Molecular phylodynamics of the heterosexual HIV epidemic in the
	    United Kingdom
  JOURNAL   PLoS Pathog. 5 (9), E1000590 (2009)
  PUBMED    19779560
REFERENCE   2 (bases 1 to 1057)
            Show all sequences for reference 2
  AUTHORS   Hughes,G.J., Fearnhill,E., Dunn,D., Lycett,S.J., Rambaut,A. and
	    Leigh Brown,A.J.
  CONSRTM   UK HIV Drug Resistance Collaboration
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2009) Institute for Evolutionary Biology,
	    University of Edinburgh, West Mains Road, Edinburgh EH9 3JT,
	    Scotland
FEATURES             Location/Qualifiers
     source	     1..1057
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="100252"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="United Kingdom"
     gene	     <1..>1057
		     /gene="pol"
     CDS	     <1..>1057
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="ACY41687.1"
		     /db_xref="GI:262287798"
		     /translation="AGTEGQGTFNFPQITLWQRPLVXIKVGGQIKEALLDTGADDTVL
		     EDINLPGKWKPKMIGGIGGFIKVRQYEQILIEICGKKAIGTVLVGPTPXNIIGRNMLT
		     QLGCTLNFPISPIETVPVKLKPGMDGPRVRQWPLTEEKIKALTAICEEMEKEGKITKI
		     GPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFCEVQLGIPHPAGLKKKKSVTV
		     LDVGDAYFSIPLDENFRKYTAFTIPSINNAAPGIRYQYNVLPQGWKGSPAIFQSSMTK
		     ILEPFRKENPDIVIYQYMDDLYVGSDLEIGQHRAKIEELREHLLKWGLTTPDKKHQKE
		     PPFLWMGYELHPDKWTVQ"
BASE COUNT	413 a	 175 c	  223 g    240 t      6 other
ORIGIN
       1 gcaggaacag aaggacaggg aacctttaac ttccctcaaa tcactctttg gcagcgaccc 
      61 cttgtcwcaa taaaagtagg gggccagata aaggaggctc tcctagatac aggagcagat 
     121 gatacagtat tagaagacat aaatttgccm ggaaagtgga aaccaaaaat gataggggga 
     181 attggaggyt ttatcaaagt aagacagtat gaacaaatac tcatagaaat ttgtggaaaa 
     241 aaggctatag gtacagtatt agtaggacct acacctrtca acataattgg aaggaatatg 
     301 ttgacacagc ttggatgcac actaaatttt ccaattagtc ccattgaaac tgtaccagta 
     361 aaattaaagc caggaatgga tggtccaagg gttagacaat ggccattgac agaagagaaa 
     421 ataaaagcat taacagcaat ttgtgaagaa atggagaagg aaggaaaaat tacaaaaatt 
     481 gggcctgaaa atccatataa tactccagta tttgccataa aaaagaagga cagtactaag 
     541 tggagaaaat tagtagattt cagggaactc aataaaagaa ctcaagattt ttgtgaagtt 
     601 caattaggaa taccacaccc agcagggtta aaaaagaaaa aatcagtaac agtactggat 
     661 gtgggggatg catatttttc catccctyta gatgaaaact tcaggaagta tactgcattc 
     721 accataccta gtataaacaa tgcagcacca gggattagat atcaatacaa tgtgcttcca 
     781 caaggatgga aaggatcacc agcaatattc caragtagca tgacaaaaat tttagagccc 
     841 tttagaaagg aaaacccaga catagttatc tatcaatata tggatgactt gtatgtagga 
     901 tctgacttag aaatagggca acatagagca aaaatagagg agttaagaga acatttattg 
     961 aaatggggac ttaccacacc agacaaaaaa catcagaaag aacccccatt tctttggatg 
    1021 gggtatgaac tccatcctga taaatggaca gtacagc
//
last modified: Tue May 31 10:56 2022


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