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LOCUS GQ462033 1057 bp RNA linear VRL 07-NOV-2009
DEFINITION HIV-1 isolate 100252 from United Kingdom pol protein (pol) gene,
partial cds
ACCESSION GQ462033
VERSION GQ462033.1 GI:262287797
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1057)
Show all sequences for reference 1
AUTHORS Hughes,G.J., Fearnhill,E., Dunn,D., Lycett,S.J., Rambaut,A. and
Leigh Brown,A.J.
CONSRTM UK HIV Drug Resistance Collaboration
TITLE Molecular phylodynamics of the heterosexual HIV epidemic in the
United Kingdom
JOURNAL PLoS Pathog. 5 (9), E1000590 (2009)
PUBMED 19779560
REFERENCE 2 (bases 1 to 1057)
Show all sequences for reference 2
AUTHORS Hughes,G.J., Fearnhill,E., Dunn,D., Lycett,S.J., Rambaut,A. and
Leigh Brown,A.J.
CONSRTM UK HIV Drug Resistance Collaboration
TITLE Direct Submission
JOURNAL Submitted (07-AUG-2009) Institute for Evolutionary Biology,
University of Edinburgh, West Mains Road, Edinburgh EH9 3JT,
Scotland
FEATURES Location/Qualifiers
source 1..1057
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="100252"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="United Kingdom"
gene <1..>1057
/gene="pol"
CDS <1..>1057
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="ACY41687.1"
/db_xref="GI:262287798"
/translation="AGTEGQGTFNFPQITLWQRPLVXIKVGGQIKEALLDTGADDTVL
EDINLPGKWKPKMIGGIGGFIKVRQYEQILIEICGKKAIGTVLVGPTPXNIIGRNMLT
QLGCTLNFPISPIETVPVKLKPGMDGPRVRQWPLTEEKIKALTAICEEMEKEGKITKI
GPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFCEVQLGIPHPAGLKKKKSVTV
LDVGDAYFSIPLDENFRKYTAFTIPSINNAAPGIRYQYNVLPQGWKGSPAIFQSSMTK
ILEPFRKENPDIVIYQYMDDLYVGSDLEIGQHRAKIEELREHLLKWGLTTPDKKHQKE
PPFLWMGYELHPDKWTVQ"
BASE COUNT 413 a 175 c 223 g 240 t 6 other
ORIGIN
1 gcaggaacag aaggacaggg aacctttaac ttccctcaaa tcactctttg gcagcgaccc
61 cttgtcwcaa taaaagtagg gggccagata aaggaggctc tcctagatac aggagcagat
121 gatacagtat tagaagacat aaatttgccm ggaaagtgga aaccaaaaat gataggggga
181 attggaggyt ttatcaaagt aagacagtat gaacaaatac tcatagaaat ttgtggaaaa
241 aaggctatag gtacagtatt agtaggacct acacctrtca acataattgg aaggaatatg
301 ttgacacagc ttggatgcac actaaatttt ccaattagtc ccattgaaac tgtaccagta
361 aaattaaagc caggaatgga tggtccaagg gttagacaat ggccattgac agaagagaaa
421 ataaaagcat taacagcaat ttgtgaagaa atggagaagg aaggaaaaat tacaaaaatt
481 gggcctgaaa atccatataa tactccagta tttgccataa aaaagaagga cagtactaag
541 tggagaaaat tagtagattt cagggaactc aataaaagaa ctcaagattt ttgtgaagtt
601 caattaggaa taccacaccc agcagggtta aaaaagaaaa aatcagtaac agtactggat
661 gtgggggatg catatttttc catccctyta gatgaaaact tcaggaagta tactgcattc
721 accataccta gtataaacaa tgcagcacca gggattagat atcaatacaa tgtgcttcca
781 caaggatgga aaggatcacc agcaatattc caragtagca tgacaaaaat tttagagccc
841 tttagaaagg aaaacccaga catagttatc tatcaatata tggatgactt gtatgtagga
901 tctgacttag aaatagggca acatagagca aaaatagagg agttaagaga acatttattg
961 aaatggggac ttaccacacc agacaaaaaa catcagaaag aacccccatt tctttggatg
1021 gggtatgaac tccatcctga taaatggaca gtacagc
//
last modified: Tue May 31 10:56 2022