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LOCUS	    GQ428830		     654 bp    RNA     linear	VRL 15-SEP-2009
DEFINITION  HIV-1 isolate PACT1059_subject 8_wk_2_RT6 from USA pol protein
	    (pol) gene, partial cds
ACCESSION   GQ428830
VERSION     GQ428830.1 GI:257785707
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 654)
            Show all sequences for reference 1
  AUTHORS   Shiu,C., Cunningham,C.K., Greenough,T., Muresan,P.,
	    Sanchez-Merino,V., Carey,V., Jackson,J.B., Ziemniak,C., Fox,L.,
	    Belzer,M., Ray,S.C., Luzuriaga,K. and Persaud,D.
  CONSRTM   Pediatric AIDS Clinical Trials Group P1059 Team
  TITLE     Identification of ongoing human immunodeficiency virus type 1
	    (HIV-1) replication in residual viremia during recombinant HIV-1
	    poxvirus immunizations in patients with clinically undetectable
	    viral loads on durable suppressive highly active antiretroviral
	    therapy
  JOURNAL   J. Virol. 83 (19), 9731-9742 (2009)
  PUBMED    19605490
REFERENCE   2 (bases 1 to 654)
            Show all sequences for reference 2
  AUTHORS   Shiu,C., Cunningham,C.K., Greenough,T., Muresan,P.,
	    Sanchez-Merino,V., Carey,V., Jackson,J.B., Ziemniak,C., Fox,L.,
	    Belzer,M., Ray,S.C., Luzuriaga,K. and Persaud,D.
  CONSRTM   Pediatric AIDS Clinical Trials Group P1059 Team
  TITLE     Direct Submission
  JOURNAL   Submitted (30-JUL-2009) Pediatrics, Johns Hopkins University School
	    of Medicine, 200 N. Wolfe Street, Room 3151, Baltimore, MD 21287,
	    USA
FEATURES             Location/Qualifiers
     source	     1..654
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="PACT1059_subject 8_wk_2_RT6"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="USA"
		     /collection_date="2006"
		     /note="subtype: B"
     gene	     <1..>654
		     /gene="pol"
     CDS	     <1..>654
		     /gene="pol"
		     /note="polymerase; RT region"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="ACV66583.1"
		     /db_xref="GI:257785708"
		     /translation="APKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVF
		     AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
		     LDKDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPD
		     IVIYQYMDDLYVGSDLEIGQHRIKIEELRQHLLKWGFTTPDKKHQKEPPFLWMGYELH
		     "
BASE COUNT	264 a	 107 c	  130 g    153 t
ORIGIN
       1 gccccaaaag ttaaacaatg gccattgaca gaagaaaaaa taaaagcatt agtagaaatt 
      61 tgtacagaaa tggaaaagga agggaaaatt tcaaaaattg ggcctgagaa tccatacaat 
     121 actccagtat ttgccataaa gaaaaaggac agtactaaat ggagaaaatt agtagatttc 
     181 agggaactta acaagagaac tcaagacttc tgggaagttc aattaggaat accacatccc 
     241 gcagggttga aaaagaaaaa gtcagtaaca gtactggatg taggtgatgc atatttttca 
     301 gttcccttag ataaagattt cagaaagtat actgcattta ccatacctag tataaacaat 
     361 gagacaccag ggattagata tcagtacaat gtgcttccac agggatggaa aggatcacca 
     421 gcaatattcc aaagtagcat gacaaaaatc ttagagcctt ttaggaaaca aaatccagac 
     481 atagttatct atcaatacat ggatgatttg tatgtaggat ctgacctaga aatagggcaa 
     541 catagaataa aaatagaaga attgaggcaa catctgttaa agtggggatt taccacccca 
     601 gacaaaaaac atcagaaaga acctccattc ctttggatgg ggtatgaact ccat
//
last modified: Tue May 31 10:56 2022


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