View NCBI entry Download GenBank file Graphics View Download GFF3 File
LOCUS GQ428830 654 bp RNA linear VRL 15-SEP-2009
DEFINITION HIV-1 isolate PACT1059_subject 8_wk_2_RT6 from USA pol protein
(pol) gene, partial cds
ACCESSION GQ428830
VERSION GQ428830.1 GI:257785707
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 654)
Show all sequences for reference 1
AUTHORS Shiu,C., Cunningham,C.K., Greenough,T., Muresan,P.,
Sanchez-Merino,V., Carey,V., Jackson,J.B., Ziemniak,C., Fox,L.,
Belzer,M., Ray,S.C., Luzuriaga,K. and Persaud,D.
CONSRTM Pediatric AIDS Clinical Trials Group P1059 Team
TITLE Identification of ongoing human immunodeficiency virus type 1
(HIV-1) replication in residual viremia during recombinant HIV-1
poxvirus immunizations in patients with clinically undetectable
viral loads on durable suppressive highly active antiretroviral
therapy
JOURNAL J. Virol. 83 (19), 9731-9742 (2009)
PUBMED 19605490
REFERENCE 2 (bases 1 to 654)
Show all sequences for reference 2
AUTHORS Shiu,C., Cunningham,C.K., Greenough,T., Muresan,P.,
Sanchez-Merino,V., Carey,V., Jackson,J.B., Ziemniak,C., Fox,L.,
Belzer,M., Ray,S.C., Luzuriaga,K. and Persaud,D.
CONSRTM Pediatric AIDS Clinical Trials Group P1059 Team
TITLE Direct Submission
JOURNAL Submitted (30-JUL-2009) Pediatrics, Johns Hopkins University School
of Medicine, 200 N. Wolfe Street, Room 3151, Baltimore, MD 21287,
USA
FEATURES Location/Qualifiers
source 1..654
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="PACT1059_subject 8_wk_2_RT6"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="USA"
/collection_date="2006"
/note="subtype: B"
gene <1..>654
/gene="pol"
CDS <1..>654
/gene="pol"
/note="polymerase; RT region"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="ACV66583.1"
/db_xref="GI:257785708"
/translation="APKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVF
AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
LDKDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPD
IVIYQYMDDLYVGSDLEIGQHRIKIEELRQHLLKWGFTTPDKKHQKEPPFLWMGYELH
"
BASE COUNT 264 a 107 c 130 g 153 t
ORIGIN
1 gccccaaaag ttaaacaatg gccattgaca gaagaaaaaa taaaagcatt agtagaaatt
61 tgtacagaaa tggaaaagga agggaaaatt tcaaaaattg ggcctgagaa tccatacaat
121 actccagtat ttgccataaa gaaaaaggac agtactaaat ggagaaaatt agtagatttc
181 agggaactta acaagagaac tcaagacttc tgggaagttc aattaggaat accacatccc
241 gcagggttga aaaagaaaaa gtcagtaaca gtactggatg taggtgatgc atatttttca
301 gttcccttag ataaagattt cagaaagtat actgcattta ccatacctag tataaacaat
361 gagacaccag ggattagata tcagtacaat gtgcttccac agggatggaa aggatcacca
421 gcaatattcc aaagtagcat gacaaaaatc ttagagcctt ttaggaaaca aaatccagac
481 atagttatct atcaatacat ggatgatttg tatgtaggat ctgacctaga aatagggcaa
541 catagaataa aaatagaaga attgaggcaa catctgttaa agtggggatt taccacccca
601 gacaaaaaac atcagaaaga acctccattc ctttggatgg ggtatgaact ccat
//
last modified: Tue May 31 10:56 2022