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LOCUS	    GQ398916		    1302 bp    DNA     linear	VRL 29-SEP-2009
DEFINITION  HIV-1 isolate 065619743341380 from Portugal pol protein (pol) gene,
	    partial cds
ACCESSION   GQ398916
VERSION     GQ398916.1 GI:259377808
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1302)
            Show all sequences for reference 1
  AUTHORS   Vercauteren,J., Wensing,A.M.J., Van de Vijver,D.A.M.C., Albert,J.,
	    Balotta,C., Hamouda,O., Kucherer,C., Struck,D., Schmit,J.-C.,
	    Asjo,B., Bruckova,M., Camacho,R.J., Clotet,B., Coughlan,S.,
	    Grossman,Z., Horban,A., Korn,K., Kostrikis,L., Nielsen,C.,
	    Paraskevis,D., Poljak,M., Puchhammer-Stockl,E., Riva,C., Ruiz,L.,
	    Salminen,M., Schuurman,R., Sonnerborg,A., Stanekova,D.,
	    Stanojevic,M., Vandamme,A.-M. and Boucher,C.A.B.
  CONSRTM   SPREAD / EuropeHIVResistance
  TITLE     Transmission of drug-resistant HIV-1 is stabilizing in Europe.
  JOURNAL   J. Infect. Dis.. 200(10); 1503-8 (2009)
  PUBMED    19835478
REFERENCE   2 (bases 1 to 1302)
            Show all sequences for reference 2
  AUTHORS   Vercauteren,J., Wensing,A.M.J., Van de Vijver,D.A.M.C., Albert,J.,
	    Balotta,C., Hamouda,O., Kuecherer,C., Struck,D., Schmit,J.-C.,
	    Asjo,B., Bruckova,M., Camacho,R., Clotet,B., Coughlan,S.,
	    Grossman,Z., Horban,A., Korn,K., Kostrikis,L.G., Nielsen,C.,
	    Paraskevis,D., Poljak,M., Puchhammer-Stoeckl,E., Riva,C., Ruiz,L.,
	    Salminen,M., Schuurman,R., Soennerborg,A., Stanekova,D.,
	    Stanojevic,M., Vandamme,A.-M. and Boucher,C.A.
  CONSRTM   SPREAD / EuropeHIVResistance
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUL-2009) Rega Institute for Medical Research and
	    University Hospitals, Katholieke Universiteit Leuven, Leuven,
	    Belgium
FEATURES             Location/Qualifiers
     source	     1..1302
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolate="okp6kkL1EcaUO2u"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="Portugal"
		     /collection_date="2005"
		     /collected_by="R. Camacho, MD"
     gene	     <1..>1302
		     /gene="pol"
     CDS	     <1..>1302
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="ACW57156.1"
		     /db_xref="GI:259377809"
		     /translation="PQITLWQRPLVPIKVGGQIKEALLDTGADDTVLEDINLPGKWKP
		     KMIGGIGGFIKVRQYDQISIEICGHKATGTVLVGPTPINIIGRNLLTQLGCTLNFPIS
		     PIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPDNPYNTPVF
		     AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKXKSVTVLDVGDAYFSVP
		     LDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRXQNPD
		     IVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGFTTPDKKHQKEPPFLWMGYELH
		     PDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYAGIKVRQLCKLLRGTKALTEVX
		     TLTKEAELELAENREILKEPVHGVYYDPSKDLIAELQKQGQG"
     misc_feature    37..273
		     /gene="pol"
		     /note="Retropepsins, pepsin-like aspartate proteases;
		     Region: HIV_retropepsin_like; cd05482"
		     /db_xref="CDD:133149"
     misc_feature    order(73..75,79..81,85..87,136..144,250..252)
		     /gene="pol"
		     /note="inhibitor binding site; inhibition site"
		     /db_xref="CDD:133149"
     misc_feature    73..81
		     /gene="pol"
		     /note="catalytic motif; other site"
		     /db_xref="CDD:133149"
     misc_feature    73..75
		     /gene="pol"
		     /note="Catalytic residue; other site"
		     /db_xref="CDD:133149"
     misc_feature    order(136..150,154..168)
		     /gene="pol"
		     /note="Active site flap; active site"
		     /db_xref="CDD:133149"
     misc_feature    349..999
		     /gene="pol"
		     /note="RT_Rtv: Reverse transcriptases (RTs) from
		     retroviruses (Rtvs). RTs catalyze the conversion of
		     single-stranded RNA into double-stranded viral DNA for
		     integration into host chromosomes. Proteins in this
		     subfamily contain long terminal repeats (LTRs) and...;
		     Region: RT_Rtv; cd01645"
		     /db_xref="CDD:73152"
     misc_feature    order(367..372,478..480,490..492,511..513,517..525,529..53
		     1,538..540,562..564,568..573,577..579,625..642,748..753,75
		     7..759,766..768,844..846,850..855,985..990)
		     /gene="pol"
		     /note="active site"
		     /db_xref="CDD:73152"
     misc_feature    order(367..372,517..525,529..531,538..540,562..564,568..57
		     3,577..579,751..753,757..759,766..768,844..846,985..990)
		     /gene="pol"
		     /note="DNA binding site"
		     /db_xref="CDD:73152"
     misc_feature    457..999
		     /gene="pol"
		     /note="Reverse transcriptase (RNA-dependent DNA
		     polymerase); Region: RVT_1; pfam00078"
		     /db_xref="CDD:109146"
     misc_feature    order(490..492,511..513,625..642,748..750,850..852)
		     /gene="pol"
		     /note="dNTP binding site; other site"
		     /db_xref="CDD:73152"
     misc_feature    order(595..606,832..834,838..840,859..861,865..867,976..97
		     8)
		     /gene="pol"
		     /note="NNRTI binding site; other site"
		     /db_xref="CDD:73152"
     misc_feature    1009..>1152
		     /gene="pol"
		     /note="Reverse transcriptase thumb domain; Region:
		     RVT_thumb; pfam06817"
		     /db_xref="CDD:115473"
     misc_feature    <1..297
		     /gene="pol"
		     /note="protease"
     misc_feature    298..>1302
		     /gene="pol"
		     /note="reverse transcriptase"
BASE COUNT	504 a	 217 c	  279 g    287 t     15 other
ORIGIN
       1 cctcagatca ctctttggca acgacccctc gtcccaataa aggtaggggg gcaaataaag 
      61 gaagctctat tagatacagg agcagatgat acagtattag aagayataaa tttgccagga 
     121 aaatggaaac caaaaatgat aggaggaatt ggaggtttta tcaaagtaag acagtatgat 
     181 cagataagca tagaaatctg tgggcataaa gctacaggta cagtattggt aggaccgacr 
     241 cctatcaaca taattggaag aaatctgttg actcagctcg gttgcacttt aaattttccc 
     301 attagtccta ttgaractgt accagtaaaa ttaaagccag gaatggatgg cccaaaagtt 
     361 aaacaatggc cattgacaga agaaaaaata aaagcattag tagaaatctg tacagaaatg 
     421 gaaaaggaag ggaaaatatc aaaaattggg cctgacaatc catacaatac tccagtattt 
     481 gccataaaga aaaaagacag tactaaatgg agaaarttag tagatttcag agaacttaat 
     541 aaaagaactc aagacttctg ggaagttcaa ttagggatac cacatcccgc agggttaaaa 
     601 aagaamaaat cagtaacagt actggatgtg ggtgatgcat atttctcagt tcccctagat 
     661 gaagacttca ggaagtatac tgcatttacc ataccyagta taaacaatga aacaccaggg 
     721 atyagatatc agtacaatgt gcttccacag ggatggaaag gatcaccagc aatattccaa 
     781 agtagcatga caaaaatctt agagcctttt agaaracaaa atccagacat agtcatttat 
     841 caatacatgg atgatttgta tgtaggatct gacttagaaa tagggcagca tagaacaaaa 
     901 atagaggaac tgagacagca tctgttgagg tggggattta ccacaccaga caaaaagcat 
     961 cagaaagagc ctccattcct ttggatgggt tatgaactcc atcctgataa atggacagta 
    1021 cagcctatag tgctgccaga aaaagacagc tggactgtca atgacataca gaagttagtg 
    1081 ggaaaattaa attgggcmag tcagatttat gcagggatta aggtaaggca attatgtaaa 
    1141 ctccttaggg gaaccaaagc wctaacagaa gtartaacay taacaaaaga agcagagcta 
    1201 gaattggcag aaaacagaga aattctaaaa gaaccagtac atggagtrta ytatgaccca 
    1261 tcraaagact taatagcaga actacagaag caggggcagg gc
//
last modified: Tue May 31 10:56 2022


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