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LOCUS GQ398916 1302 bp DNA linear VRL 29-SEP-2009
DEFINITION HIV-1 isolate 065619743341380 from Portugal pol protein (pol) gene,
partial cds
ACCESSION GQ398916
VERSION GQ398916.1 GI:259377808
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1302)
Show all sequences for reference 1
AUTHORS Vercauteren,J., Wensing,A.M.J., Van de Vijver,D.A.M.C., Albert,J.,
Balotta,C., Hamouda,O., Kucherer,C., Struck,D., Schmit,J.-C.,
Asjo,B., Bruckova,M., Camacho,R.J., Clotet,B., Coughlan,S.,
Grossman,Z., Horban,A., Korn,K., Kostrikis,L., Nielsen,C.,
Paraskevis,D., Poljak,M., Puchhammer-Stockl,E., Riva,C., Ruiz,L.,
Salminen,M., Schuurman,R., Sonnerborg,A., Stanekova,D.,
Stanojevic,M., Vandamme,A.-M. and Boucher,C.A.B.
CONSRTM SPREAD / EuropeHIVResistance
TITLE Transmission of drug-resistant HIV-1 is stabilizing in Europe.
JOURNAL J. Infect. Dis.. 200(10); 1503-8 (2009)
PUBMED 19835478
REFERENCE 2 (bases 1 to 1302)
Show all sequences for reference 2
AUTHORS Vercauteren,J., Wensing,A.M.J., Van de Vijver,D.A.M.C., Albert,J.,
Balotta,C., Hamouda,O., Kuecherer,C., Struck,D., Schmit,J.-C.,
Asjo,B., Bruckova,M., Camacho,R., Clotet,B., Coughlan,S.,
Grossman,Z., Horban,A., Korn,K., Kostrikis,L.G., Nielsen,C.,
Paraskevis,D., Poljak,M., Puchhammer-Stoeckl,E., Riva,C., Ruiz,L.,
Salminen,M., Schuurman,R., Soennerborg,A., Stanekova,D.,
Stanojevic,M., Vandamme,A.-M. and Boucher,C.A.
CONSRTM SPREAD / EuropeHIVResistance
TITLE Direct Submission
JOURNAL Submitted (15-JUL-2009) Rega Institute for Medical Research and
University Hospitals, Katholieke Universiteit Leuven, Leuven,
Belgium
FEATURES Location/Qualifiers
source 1..1302
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="okp6kkL1EcaUO2u"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="Portugal"
/collection_date="2005"
/collected_by="R. Camacho, MD"
gene <1..>1302
/gene="pol"
CDS <1..>1302
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="ACW57156.1"
/db_xref="GI:259377809"
/translation="PQITLWQRPLVPIKVGGQIKEALLDTGADDTVLEDINLPGKWKP
KMIGGIGGFIKVRQYDQISIEICGHKATGTVLVGPTPINIIGRNLLTQLGCTLNFPIS
PIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPDNPYNTPVF
AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKXKSVTVLDVGDAYFSVP
LDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRXQNPD
IVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGFTTPDKKHQKEPPFLWMGYELH
PDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYAGIKVRQLCKLLRGTKALTEVX
TLTKEAELELAENREILKEPVHGVYYDPSKDLIAELQKQGQG"
misc_feature 37..273
/gene="pol"
/note="Retropepsins, pepsin-like aspartate proteases;
Region: HIV_retropepsin_like; cd05482"
/db_xref="CDD:133149"
misc_feature order(73..75,79..81,85..87,136..144,250..252)
/gene="pol"
/note="inhibitor binding site; inhibition site"
/db_xref="CDD:133149"
misc_feature 73..81
/gene="pol"
/note="catalytic motif; other site"
/db_xref="CDD:133149"
misc_feature 73..75
/gene="pol"
/note="Catalytic residue; other site"
/db_xref="CDD:133149"
misc_feature order(136..150,154..168)
/gene="pol"
/note="Active site flap; active site"
/db_xref="CDD:133149"
misc_feature 349..999
/gene="pol"
/note="RT_Rtv: Reverse transcriptases (RTs) from
retroviruses (Rtvs). RTs catalyze the conversion of
single-stranded RNA into double-stranded viral DNA for
integration into host chromosomes. Proteins in this
subfamily contain long terminal repeats (LTRs) and...;
Region: RT_Rtv; cd01645"
/db_xref="CDD:73152"
misc_feature order(367..372,478..480,490..492,511..513,517..525,529..53
1,538..540,562..564,568..573,577..579,625..642,748..753,75
7..759,766..768,844..846,850..855,985..990)
/gene="pol"
/note="active site"
/db_xref="CDD:73152"
misc_feature order(367..372,517..525,529..531,538..540,562..564,568..57
3,577..579,751..753,757..759,766..768,844..846,985..990)
/gene="pol"
/note="DNA binding site"
/db_xref="CDD:73152"
misc_feature 457..999
/gene="pol"
/note="Reverse transcriptase (RNA-dependent DNA
polymerase); Region: RVT_1; pfam00078"
/db_xref="CDD:109146"
misc_feature order(490..492,511..513,625..642,748..750,850..852)
/gene="pol"
/note="dNTP binding site; other site"
/db_xref="CDD:73152"
misc_feature order(595..606,832..834,838..840,859..861,865..867,976..97
8)
/gene="pol"
/note="NNRTI binding site; other site"
/db_xref="CDD:73152"
misc_feature 1009..>1152
/gene="pol"
/note="Reverse transcriptase thumb domain; Region:
RVT_thumb; pfam06817"
/db_xref="CDD:115473"
misc_feature <1..297
/gene="pol"
/note="protease"
misc_feature 298..>1302
/gene="pol"
/note="reverse transcriptase"
BASE COUNT 504 a 217 c 279 g 287 t 15 other
ORIGIN
1 cctcagatca ctctttggca acgacccctc gtcccaataa aggtaggggg gcaaataaag
61 gaagctctat tagatacagg agcagatgat acagtattag aagayataaa tttgccagga
121 aaatggaaac caaaaatgat aggaggaatt ggaggtttta tcaaagtaag acagtatgat
181 cagataagca tagaaatctg tgggcataaa gctacaggta cagtattggt aggaccgacr
241 cctatcaaca taattggaag aaatctgttg actcagctcg gttgcacttt aaattttccc
301 attagtccta ttgaractgt accagtaaaa ttaaagccag gaatggatgg cccaaaagtt
361 aaacaatggc cattgacaga agaaaaaata aaagcattag tagaaatctg tacagaaatg
421 gaaaaggaag ggaaaatatc aaaaattggg cctgacaatc catacaatac tccagtattt
481 gccataaaga aaaaagacag tactaaatgg agaaarttag tagatttcag agaacttaat
541 aaaagaactc aagacttctg ggaagttcaa ttagggatac cacatcccgc agggttaaaa
601 aagaamaaat cagtaacagt actggatgtg ggtgatgcat atttctcagt tcccctagat
661 gaagacttca ggaagtatac tgcatttacc ataccyagta taaacaatga aacaccaggg
721 atyagatatc agtacaatgt gcttccacag ggatggaaag gatcaccagc aatattccaa
781 agtagcatga caaaaatctt agagcctttt agaaracaaa atccagacat agtcatttat
841 caatacatgg atgatttgta tgtaggatct gacttagaaa tagggcagca tagaacaaaa
901 atagaggaac tgagacagca tctgttgagg tggggattta ccacaccaga caaaaagcat
961 cagaaagagc ctccattcct ttggatgggt tatgaactcc atcctgataa atggacagta
1021 cagcctatag tgctgccaga aaaagacagc tggactgtca atgacataca gaagttagtg
1081 ggaaaattaa attgggcmag tcagatttat gcagggatta aggtaaggca attatgtaaa
1141 ctccttaggg gaaccaaagc wctaacagaa gtartaacay taacaaaaga agcagagcta
1201 gaattggcag aaaacagaga aattctaaaa gaaccagtac atggagtrta ytatgaccca
1261 tcraaagact taatagcaga actacagaag caggggcagg gc
//
last modified: Tue May 31 10:56 2022