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LOCUS GQ398901 1302 bp DNA linear VRL 29-SEP-2009
DEFINITION HIV-1 isolate 056520351153496 from Norway pol protein (pol) gene,
partial cds
ACCESSION GQ398901
VERSION GQ398901.1 GI:259377779
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1302)
Show all sequences for reference 1
AUTHORS Vercauteren,J., Wensing,A.M.J., Van de Vijver,D.A.M.C., Albert,J.,
Balotta,C., Hamouda,O., Kucherer,C., Struck,D., Schmit,J.-C.,
Asjo,B., Bruckova,M., Camacho,R.J., Clotet,B., Coughlan,S.,
Grossman,Z., Horban,A., Korn,K., Kostrikis,L., Nielsen,C.,
Paraskevis,D., Poljak,M., Puchhammer-Stockl,E., Riva,C., Ruiz,L.,
Salminen,M., Schuurman,R., Sonnerborg,A., Stanekova,D.,
Stanojevic,M., Vandamme,A.-M. and Boucher,C.A.B.
CONSRTM SPREAD / EuropeHIVResistance
TITLE Transmission of drug-resistant HIV-1 is stabilizing in Europe.
JOURNAL J. Infect. Dis.. 200(10); 1503-8 (2009)
PUBMED 19835478
REFERENCE 2 (bases 1 to 1302)
Show all sequences for reference 2
AUTHORS Vercauteren,J., Wensing,A.M.J., Van de Vijver,D.A.M.C., Albert,J.,
Balotta,C., Hamouda,O., Kuecherer,C., Struck,D., Schmit,J.-C.,
Asjo,B., Bruckova,M., Camacho,R., Clotet,B., Coughlan,S.,
Grossman,Z., Horban,A., Korn,K., Kostrikis,L.G., Nielsen,C.,
Paraskevis,D., Poljak,M., Puchhammer-Stoeckl,E., Riva,C., Ruiz,L.,
Salminen,M., Schuurman,R., Soennerborg,A., Stanekova,D.,
Stanojevic,M., Vandamme,A.-M. and Boucher,C.A.
CONSRTM SPREAD / EuropeHIVResistance
TITLE Direct Submission
JOURNAL Submitted (15-JUL-2009) Rega Institute for Medical Research and
University Hospitals, Katholieke Universiteit Leuven, Leuven,
Belgium
FEATURES Location/Qualifiers
source 1..1302
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="narDTecRirxZH40"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="Norway"
/collection_date="2004"
/collected_by="Dr. B. Asjo"
gene <1..>1302
/gene="pol"
CDS <1..>1302
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="ACW57142.1"
/db_xref="GI:259377780"
/translation="PQITLWQRPLVTVRIGEQLIEALLDTGADDTVLEKIDLPGKWKP
KMIGGIGGFIKVRQYDQIIMEICGKKAIGTVLVGPTPVNIIGRNMLTQIGCTLNFPIS
PIETVPVKLKPGMDGPKVKQWPLTEEKIKALTDICTEMEKEGKISKIGPENPYNTPVF
AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
LDKDFRKYTAFTIPSVNNETPGTRYQYNVLPQGWKGSPAIFQASMTKILEPFRAKNPE
MVIYQYMDDLYVGSDLEIGKHRAKIEELREHLLTWGFTTPDKKHQKEPPFLWMGYELH
PDKWTVQPIQLPDKDSWTVNDIQKLVGKLNWASQIYAGIKVKQLCKLLRGAKALTDIV
TLTEEAELELAENREILKEPVHGVYYDPAKDLIVEIQKQGQD"
misc_feature 31..273
/gene="pol"
/note="Retropepsins, pepsin-like aspartate proteases;
Region: HIV_retropepsin_like; cd05482"
/db_xref="CDD:133149"
misc_feature order(73..75,79..81,85..87,136..144,250..252)
/gene="pol"
/note="inhibitor binding site; inhibition site"
/db_xref="CDD:133149"
misc_feature 73..81
/gene="pol"
/note="catalytic motif; other site"
/db_xref="CDD:133149"
misc_feature 73..75
/gene="pol"
/note="Catalytic residue; other site"
/db_xref="CDD:133149"
misc_feature order(136..150,154..168)
/gene="pol"
/note="Active site flap; active site"
/db_xref="CDD:133149"
misc_feature 349..999
/gene="pol"
/note="RT_like: Reverse transcriptase (RT, RNA-dependent
DNA polymerase)_like family. An RT gene is usually
indicative of a mobile element such as a retrotransposon
or retrovirus. RTs occur in a variety of mobile elements,
including retrotransposons...; Region: RT_like; cl02808"
/db_xref="CDD:141703"
misc_feature 457..999
/gene="pol"
/note="Reverse transcriptase (RNA-dependent DNA
polymerase); Region: RVT_1; pfam00078"
/db_xref="CDD:109146"
misc_feature order(625..642,748..753,844..846,850..855,985..990)
/gene="pol"
/note="active site"
/db_xref="CDD:73150"
misc_feature order(625..642,748..750,850..852)
/gene="pol"
/note="NTP binding site; other site"
/db_xref="CDD:73150"
misc_feature 751..753
/gene="pol"
/note="nucleic acid binding site; other site"
/db_xref="CDD:73150"
misc_feature 1009..1176
/gene="pol"
/note="Reverse transcriptase thumb domain; Region:
RVT_thumb; pfam06817"
/db_xref="CDD:115473"
misc_feature <1..297
/gene="pol"
/note="protease"
misc_feature 298..>1302
/gene="pol"
/note="reverse transcriptase"
BASE COUNT 521 a 206 c 274 g 301 t
ORIGIN
1 cctcaaatca ctctttggca acgaccctta gtcacagtaa gaatagggga acagctaata
61 gaagccctat tagacacagg agcagatgat acagtattag aaaaaataga tttaccaggg
121 aaatggaaac caaaaatgat agggggaatt ggaggtttta tcaaagtaag acaatatgat
181 cagataatta tggaaatttg tggaaaaaag gctataggta cagtgttagt aggacccaca
241 cctgtcaaca taattggacg aaatatgttg actcagattg gttgtacttt aaattttcca
301 attagtccta ttgaaactgt accagtaaaa ttaaagccag gaatggatgg cccaaaggtt
361 aaacaatggc cattgacaga agaaaaaata aaagcattaa cagacatttg tacagaaatg
421 gaaaaggaag gaaaaatttc aaaaattggg cctgaaaatc catacaatac tccagtattt
481 gcaataaaga aaaaagatag tactaaatgg agaaaattag tagatttcag agaacttaat
541 aaaagaactc aagacttctg ggaggtccaa ctaggaatac ctcatcccgc aggattaaaa
601 aagaaaaaat cagtaacagt actagatgtg ggggatgcat atttttcagt tcccttagat
661 aaagatttta gaaagtatac tgcattcact atacctagtg taaataatga aacaccgggg
721 actagatatc agtacaatgt gcttccacag ggatggaaag gatcaccagc aatatttcag
781 gctagcatga caaaaatctt agagcccttt agagcaaaaa atccagagat ggtaatttat
841 caatatatgg atgacttata tgtaggatct gacttagaga tagggaagca tagagcaaaa
901 atagaggagt taagggaaca tctactgaca tggggattta ccacaccaga caaaaagcat
961 cagaaagaac ctccattcct ttggatggga tatgaactcc atcctgacaa atggacagtc
1021 cagcctatac agttgccaga caaagacagc tggactgtca atgatataca gaaattagtg
1081 ggaaaactaa attgggcaag tcaaatttat gcaggaatta aagtaaagca actgtgtaag
1141 cttctcaggg gagccaaagc actgacagat atagtaacat tgactgaaga agcagagtta
1201 gaattggcag aaaacaggga aattctaaaa gaacctgtac atggagtcta ttatgaccca
1261 gcaaaagact taatagtaga aatacagaaa caagggcaag ac
//
last modified: Tue May 31 10:56 2022