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LOCUS	    GQ398901		    1302 bp    DNA     linear	VRL 29-SEP-2009
DEFINITION  HIV-1 isolate 056520351153496 from Norway pol protein (pol) gene,
	    partial cds
ACCESSION   GQ398901
VERSION     GQ398901.1 GI:259377779
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1302)
            Show all sequences for reference 1
  AUTHORS   Vercauteren,J., Wensing,A.M.J., Van de Vijver,D.A.M.C., Albert,J.,
	    Balotta,C., Hamouda,O., Kucherer,C., Struck,D., Schmit,J.-C.,
	    Asjo,B., Bruckova,M., Camacho,R.J., Clotet,B., Coughlan,S.,
	    Grossman,Z., Horban,A., Korn,K., Kostrikis,L., Nielsen,C.,
	    Paraskevis,D., Poljak,M., Puchhammer-Stockl,E., Riva,C., Ruiz,L.,
	    Salminen,M., Schuurman,R., Sonnerborg,A., Stanekova,D.,
	    Stanojevic,M., Vandamme,A.-M. and Boucher,C.A.B.
  CONSRTM   SPREAD / EuropeHIVResistance
  TITLE     Transmission of drug-resistant HIV-1 is stabilizing in Europe.
  JOURNAL   J. Infect. Dis.. 200(10); 1503-8 (2009)
  PUBMED    19835478
REFERENCE   2 (bases 1 to 1302)
            Show all sequences for reference 2
  AUTHORS   Vercauteren,J., Wensing,A.M.J., Van de Vijver,D.A.M.C., Albert,J.,
	    Balotta,C., Hamouda,O., Kuecherer,C., Struck,D., Schmit,J.-C.,
	    Asjo,B., Bruckova,M., Camacho,R., Clotet,B., Coughlan,S.,
	    Grossman,Z., Horban,A., Korn,K., Kostrikis,L.G., Nielsen,C.,
	    Paraskevis,D., Poljak,M., Puchhammer-Stoeckl,E., Riva,C., Ruiz,L.,
	    Salminen,M., Schuurman,R., Soennerborg,A., Stanekova,D.,
	    Stanojevic,M., Vandamme,A.-M. and Boucher,C.A.
  CONSRTM   SPREAD / EuropeHIVResistance
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUL-2009) Rega Institute for Medical Research and
	    University Hospitals, Katholieke Universiteit Leuven, Leuven,
	    Belgium
FEATURES             Location/Qualifiers
     source	     1..1302
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolate="narDTecRirxZH40"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="Norway"
		     /collection_date="2004"
		     /collected_by="Dr. B. Asjo"
     gene	     <1..>1302
		     /gene="pol"
     CDS	     <1..>1302
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="ACW57142.1"
		     /db_xref="GI:259377780"
		     /translation="PQITLWQRPLVTVRIGEQLIEALLDTGADDTVLEKIDLPGKWKP
		     KMIGGIGGFIKVRQYDQIIMEICGKKAIGTVLVGPTPVNIIGRNMLTQIGCTLNFPIS
		     PIETVPVKLKPGMDGPKVKQWPLTEEKIKALTDICTEMEKEGKISKIGPENPYNTPVF
		     AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
		     LDKDFRKYTAFTIPSVNNETPGTRYQYNVLPQGWKGSPAIFQASMTKILEPFRAKNPE
		     MVIYQYMDDLYVGSDLEIGKHRAKIEELREHLLTWGFTTPDKKHQKEPPFLWMGYELH
		     PDKWTVQPIQLPDKDSWTVNDIQKLVGKLNWASQIYAGIKVKQLCKLLRGAKALTDIV
		     TLTEEAELELAENREILKEPVHGVYYDPAKDLIVEIQKQGQD"
     misc_feature    31..273
		     /gene="pol"
		     /note="Retropepsins, pepsin-like aspartate proteases;
		     Region: HIV_retropepsin_like; cd05482"
		     /db_xref="CDD:133149"
     misc_feature    order(73..75,79..81,85..87,136..144,250..252)
		     /gene="pol"
		     /note="inhibitor binding site; inhibition site"
		     /db_xref="CDD:133149"
     misc_feature    73..81
		     /gene="pol"
		     /note="catalytic motif; other site"
		     /db_xref="CDD:133149"
     misc_feature    73..75
		     /gene="pol"
		     /note="Catalytic residue; other site"
		     /db_xref="CDD:133149"
     misc_feature    order(136..150,154..168)
		     /gene="pol"
		     /note="Active site flap; active site"
		     /db_xref="CDD:133149"
     misc_feature    349..999
		     /gene="pol"
		     /note="RT_like: Reverse transcriptase (RT, RNA-dependent
		     DNA polymerase)_like family. An RT gene is usually
		     indicative of a mobile element such as a retrotransposon
		     or retrovirus. RTs occur in a variety of mobile elements,
		     including retrotransposons...; Region: RT_like; cl02808"
		     /db_xref="CDD:141703"
     misc_feature    457..999
		     /gene="pol"
		     /note="Reverse transcriptase (RNA-dependent DNA
		     polymerase); Region: RVT_1; pfam00078"
		     /db_xref="CDD:109146"
     misc_feature    order(625..642,748..753,844..846,850..855,985..990)
		     /gene="pol"
		     /note="active site"
		     /db_xref="CDD:73150"
     misc_feature    order(625..642,748..750,850..852)
		     /gene="pol"
		     /note="NTP binding site; other site"
		     /db_xref="CDD:73150"
     misc_feature    751..753
		     /gene="pol"
		     /note="nucleic acid binding site; other site"
		     /db_xref="CDD:73150"
     misc_feature    1009..1176
		     /gene="pol"
		     /note="Reverse transcriptase thumb domain; Region:
		     RVT_thumb; pfam06817"
		     /db_xref="CDD:115473"
     misc_feature    <1..297
		     /gene="pol"
		     /note="protease"
     misc_feature    298..>1302
		     /gene="pol"
		     /note="reverse transcriptase"
BASE COUNT	521 a	 206 c	  274 g    301 t
ORIGIN
       1 cctcaaatca ctctttggca acgaccctta gtcacagtaa gaatagggga acagctaata 
      61 gaagccctat tagacacagg agcagatgat acagtattag aaaaaataga tttaccaggg 
     121 aaatggaaac caaaaatgat agggggaatt ggaggtttta tcaaagtaag acaatatgat 
     181 cagataatta tggaaatttg tggaaaaaag gctataggta cagtgttagt aggacccaca 
     241 cctgtcaaca taattggacg aaatatgttg actcagattg gttgtacttt aaattttcca 
     301 attagtccta ttgaaactgt accagtaaaa ttaaagccag gaatggatgg cccaaaggtt 
     361 aaacaatggc cattgacaga agaaaaaata aaagcattaa cagacatttg tacagaaatg 
     421 gaaaaggaag gaaaaatttc aaaaattggg cctgaaaatc catacaatac tccagtattt 
     481 gcaataaaga aaaaagatag tactaaatgg agaaaattag tagatttcag agaacttaat 
     541 aaaagaactc aagacttctg ggaggtccaa ctaggaatac ctcatcccgc aggattaaaa 
     601 aagaaaaaat cagtaacagt actagatgtg ggggatgcat atttttcagt tcccttagat 
     661 aaagatttta gaaagtatac tgcattcact atacctagtg taaataatga aacaccgggg 
     721 actagatatc agtacaatgt gcttccacag ggatggaaag gatcaccagc aatatttcag 
     781 gctagcatga caaaaatctt agagcccttt agagcaaaaa atccagagat ggtaatttat 
     841 caatatatgg atgacttata tgtaggatct gacttagaga tagggaagca tagagcaaaa 
     901 atagaggagt taagggaaca tctactgaca tggggattta ccacaccaga caaaaagcat 
     961 cagaaagaac ctccattcct ttggatggga tatgaactcc atcctgacaa atggacagtc 
    1021 cagcctatac agttgccaga caaagacagc tggactgtca atgatataca gaaattagtg 
    1081 ggaaaactaa attgggcaag tcaaatttat gcaggaatta aagtaaagca actgtgtaag 
    1141 cttctcaggg gagccaaagc actgacagat atagtaacat tgactgaaga agcagagtta 
    1201 gaattggcag aaaacaggga aattctaaaa gaacctgtac atggagtcta ttatgaccca 
    1261 gcaaaagact taatagtaga aatacagaaa caagggcaag ac
//
last modified: Tue May 31 10:56 2022


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