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LOCUS	    GQ398837		    1302 bp    DNA     linear	VRL 29-SEP-2009
DEFINITION  HIV-1 isolate 009623472638684 from Finland pol protein (pol) gene,
	    partial cds
ACCESSION   GQ398837
VERSION     GQ398837.1 GI:259377658
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1302)
            Show all sequences for reference 1
  AUTHORS   Vercauteren,J., Wensing,A.M.J., Van de Vijver,D.A.M.C., Albert,J.,
	    Balotta,C., Hamouda,O., Kucherer,C., Struck,D., Schmit,J.-C.,
	    Asjo,B., Bruckova,M., Camacho,R.J., Clotet,B., Coughlan,S.,
	    Grossman,Z., Horban,A., Korn,K., Kostrikis,L., Nielsen,C.,
	    Paraskevis,D., Poljak,M., Puchhammer-Stockl,E., Riva,C., Ruiz,L.,
	    Salminen,M., Schuurman,R., Sonnerborg,A., Stanekova,D.,
	    Stanojevic,M., Vandamme,A.-M. and Boucher,C.A.B.
  CONSRTM   SPREAD / EuropeHIVResistance
  TITLE     Transmission of drug-resistant HIV-1 is stabilizing in Europe.
  JOURNAL   J. Infect. Dis.. 200(10); 1503-8 (2009)
  PUBMED    19835478
REFERENCE   2 (bases 1 to 1302)
            Show all sequences for reference 2
  AUTHORS   Vercauteren,J., Wensing,A.M.J., Van de Vijver,D.A.M.C., Albert,J.,
	    Balotta,C., Hamouda,O., Kuecherer,C., Struck,D., Schmit,J.-C.,
	    Asjo,B., Bruckova,M., Camacho,R., Clotet,B., Coughlan,S.,
	    Grossman,Z., Horban,A., Korn,K., Kostrikis,L.G., Nielsen,C.,
	    Paraskevis,D., Poljak,M., Puchhammer-Stoeckl,E., Riva,C., Ruiz,L.,
	    Salminen,M., Schuurman,R., Soennerborg,A., Stanekova,D.,
	    Stanojevic,M., Vandamme,A.-M. and Boucher,C.A.
  CONSRTM   SPREAD / EuropeHIVResistance
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUL-2009) Rega Institute for Medical Research and
	    University Hospitals, Katholieke Universiteit Leuven, Leuven,
	    Belgium
FEATURES             Location/Qualifiers
     source	     1..1302
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolate="h5Xl14VNiANqSDR"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="Finland"
		     /collection_date="2004"
		     /collected_by="Dr. M. Salminen"
     gene	     <1..>1302
		     /gene="pol"
     CDS	     <1..>1302
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="ACW57085.1"
		     /db_xref="GI:259377659"
		     /translation="PQITLWQRPLVTIKVGGQIKEALLDTGADDTVLEEIDLPGKWKP
		     KMIGGIGGFIKVRQYEQVVIEICGKKAIGTVLVGPTPINIIGRNLLTQLGCTLNFPIS
		     PIETVPVKLKPGMDGPKVKQWPLTEEKIKALTEICAEMEKEGKITKIGPENPYNTPVF
		     AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
		     LHEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRAQNPG
		     MVIYQYMDDLYVGSDLEIGQHRAKIEELREHLLKWGFTTPDKKHQKEPPFLWMGYELH
		     PDKWTVQPIQLPDKDSWTVNDIQKLVGKLNWASQIYPGIKVKQLCKLLRGAKALTDIV
		     PLTEEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGYD"
     misc_feature    31..273
		     /gene="pol"
		     /note="Retropepsins, pepsin-like aspartate proteases;
		     Region: HIV_retropepsin_like; cd05482"
		     /db_xref="CDD:133149"
     misc_feature    order(73..75,79..81,85..87,136..144,250..252)
		     /gene="pol"
		     /note="inhibitor binding site; inhibition site"
		     /db_xref="CDD:133149"
     misc_feature    73..81
		     /gene="pol"
		     /note="catalytic motif; other site"
		     /db_xref="CDD:133149"
     misc_feature    73..75
		     /gene="pol"
		     /note="Catalytic residue; other site"
		     /db_xref="CDD:133149"
     misc_feature    order(136..150,154..168)
		     /gene="pol"
		     /note="Active site flap; active site"
		     /db_xref="CDD:133149"
     misc_feature    349..999
		     /gene="pol"
		     /note="RT_like: Reverse transcriptase (RT, RNA-dependent
		     DNA polymerase)_like family. An RT gene is usually
		     indicative of a mobile element such as a retrotransposon
		     or retrovirus. RTs occur in a variety of mobile elements,
		     including retrotransposons...; Region: RT_like; cl02808"
		     /db_xref="CDD:141703"
     misc_feature    457..999
		     /gene="pol"
		     /note="Reverse transcriptase (RNA-dependent DNA
		     polymerase); Region: RVT_1; pfam00078"
		     /db_xref="CDD:109146"
     misc_feature    order(625..642,748..753,844..846,850..855,985..990)
		     /gene="pol"
		     /note="active site"
		     /db_xref="CDD:73150"
     misc_feature    order(625..642,748..750,850..852)
		     /gene="pol"
		     /note="NTP binding site; other site"
		     /db_xref="CDD:73150"
     misc_feature    751..753
		     /gene="pol"
		     /note="nucleic acid binding site; other site"
		     /db_xref="CDD:73150"
     misc_feature    1009..1218
		     /gene="pol"
		     /note="Reverse transcriptase thumb domain; Region:
		     RVT_thumb; pfam06817"
		     /db_xref="CDD:115473"
     misc_feature    <1..297
		     /gene="pol"
		     /note="protease"
     misc_feature    298..>1302
		     /gene="pol"
		     /note="reverse transcriptase"
BASE COUNT	512 a	 211 c	  281 g    296 t      2 other
ORIGIN
       1 cctcaaatca ctctttggca acgacccctt gtcacaataa aagtaggggg ccagataaaa 
      61 gaggctctct tagatacagg agcagatgat acagtattag aagaaataga tttgccagga 
     121 aaatggaaac caaaaatgat aggaggaatt ggaggtttta tcaaagtaag acartatgag 
     181 caagtagtta tagaaatttg tggaaaaaag gctataggta cagtattagt aggccctaca 
     241 cctatcaaca taattggaag aaatttgttg actcagcttg ggtgcacact aaattttcca 
     301 attagtccca ttgaaactgt accagtaaaa ttaaagccag gaatggatgg cccaaaggtt 
     361 aaacaatggc cattaacaga agagaaaata aaagcattaa cagaaatttg tgcagaaatg 
     421 gagaaggaag gaaaaattac aaaaattggg cctgaaaatc catataacac tccagtattt 
     481 gccataaaaa agaaggacag tactaagtgg agaaaattag tagattttag ggaactcaat 
     541 aaaagaactc aggacttttg ggaagttcaa ttaggaatac cacacccagc agggttaaaa 
     601 aagaaaaaat cagtgacagt actggatgtg ggggatgcat atttttcagt tcctttacat 
     661 gaagacttca ggaaatatac tgcattcacc atacctagta taaacaatga gacaccagga 
     721 attagatatc aatataatgt gcttccacag ggatggaaag gatcaccagc aatattccag 
     781 agtagcatga caaaaatctt agagcccttt agggcacaaa acccaggaat ggttatctat 
     841 caatatatgg atgacttgta tgtaggatct gacttagaaa tagggcaaca tagagcaaaa 
     901 atagaggagt taagagagca tttattgaaa tggggattta ccacaccaga caaaaagcat 
     961 cagaaagaac ccccatttct ctggatgggg tatgaactcc atcctgacaa atggacagta 
    1021 cagcctatac agctgccaga caaggatagc tggactgtca atgatataca aaagttagtg 
    1081 ggaaaattaa actgggcaag tcagatttac ccagggatta aagtaaagca actgtgtaaa 
    1141 ctccttaggg gagccaaagc attaacagac atagtaccac tgactgaaga agcagaatta 
    1201 gaattggcag agaacaggga aattttaaaa gaaccagtac atggagtata ttatgaccca 
    1261 tcaaaagact taatagctga aatacagaaa caggggtatg ay
//
last modified: Tue May 31 10:56 2022


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