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LOCUS GQ398837 1302 bp DNA linear VRL 29-SEP-2009
DEFINITION HIV-1 isolate 009623472638684 from Finland pol protein (pol) gene,
partial cds
ACCESSION GQ398837
VERSION GQ398837.1 GI:259377658
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1302)
Show all sequences for reference 1
AUTHORS Vercauteren,J., Wensing,A.M.J., Van de Vijver,D.A.M.C., Albert,J.,
Balotta,C., Hamouda,O., Kucherer,C., Struck,D., Schmit,J.-C.,
Asjo,B., Bruckova,M., Camacho,R.J., Clotet,B., Coughlan,S.,
Grossman,Z., Horban,A., Korn,K., Kostrikis,L., Nielsen,C.,
Paraskevis,D., Poljak,M., Puchhammer-Stockl,E., Riva,C., Ruiz,L.,
Salminen,M., Schuurman,R., Sonnerborg,A., Stanekova,D.,
Stanojevic,M., Vandamme,A.-M. and Boucher,C.A.B.
CONSRTM SPREAD / EuropeHIVResistance
TITLE Transmission of drug-resistant HIV-1 is stabilizing in Europe.
JOURNAL J. Infect. Dis.. 200(10); 1503-8 (2009)
PUBMED 19835478
REFERENCE 2 (bases 1 to 1302)
Show all sequences for reference 2
AUTHORS Vercauteren,J., Wensing,A.M.J., Van de Vijver,D.A.M.C., Albert,J.,
Balotta,C., Hamouda,O., Kuecherer,C., Struck,D., Schmit,J.-C.,
Asjo,B., Bruckova,M., Camacho,R., Clotet,B., Coughlan,S.,
Grossman,Z., Horban,A., Korn,K., Kostrikis,L.G., Nielsen,C.,
Paraskevis,D., Poljak,M., Puchhammer-Stoeckl,E., Riva,C., Ruiz,L.,
Salminen,M., Schuurman,R., Soennerborg,A., Stanekova,D.,
Stanojevic,M., Vandamme,A.-M. and Boucher,C.A.
CONSRTM SPREAD / EuropeHIVResistance
TITLE Direct Submission
JOURNAL Submitted (15-JUL-2009) Rega Institute for Medical Research and
University Hospitals, Katholieke Universiteit Leuven, Leuven,
Belgium
FEATURES Location/Qualifiers
source 1..1302
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="h5Xl14VNiANqSDR"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="Finland"
/collection_date="2004"
/collected_by="Dr. M. Salminen"
gene <1..>1302
/gene="pol"
CDS <1..>1302
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="ACW57085.1"
/db_xref="GI:259377659"
/translation="PQITLWQRPLVTIKVGGQIKEALLDTGADDTVLEEIDLPGKWKP
KMIGGIGGFIKVRQYEQVVIEICGKKAIGTVLVGPTPINIIGRNLLTQLGCTLNFPIS
PIETVPVKLKPGMDGPKVKQWPLTEEKIKALTEICAEMEKEGKITKIGPENPYNTPVF
AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
LHEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRAQNPG
MVIYQYMDDLYVGSDLEIGQHRAKIEELREHLLKWGFTTPDKKHQKEPPFLWMGYELH
PDKWTVQPIQLPDKDSWTVNDIQKLVGKLNWASQIYPGIKVKQLCKLLRGAKALTDIV
PLTEEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGYD"
misc_feature 31..273
/gene="pol"
/note="Retropepsins, pepsin-like aspartate proteases;
Region: HIV_retropepsin_like; cd05482"
/db_xref="CDD:133149"
misc_feature order(73..75,79..81,85..87,136..144,250..252)
/gene="pol"
/note="inhibitor binding site; inhibition site"
/db_xref="CDD:133149"
misc_feature 73..81
/gene="pol"
/note="catalytic motif; other site"
/db_xref="CDD:133149"
misc_feature 73..75
/gene="pol"
/note="Catalytic residue; other site"
/db_xref="CDD:133149"
misc_feature order(136..150,154..168)
/gene="pol"
/note="Active site flap; active site"
/db_xref="CDD:133149"
misc_feature 349..999
/gene="pol"
/note="RT_like: Reverse transcriptase (RT, RNA-dependent
DNA polymerase)_like family. An RT gene is usually
indicative of a mobile element such as a retrotransposon
or retrovirus. RTs occur in a variety of mobile elements,
including retrotransposons...; Region: RT_like; cl02808"
/db_xref="CDD:141703"
misc_feature 457..999
/gene="pol"
/note="Reverse transcriptase (RNA-dependent DNA
polymerase); Region: RVT_1; pfam00078"
/db_xref="CDD:109146"
misc_feature order(625..642,748..753,844..846,850..855,985..990)
/gene="pol"
/note="active site"
/db_xref="CDD:73150"
misc_feature order(625..642,748..750,850..852)
/gene="pol"
/note="NTP binding site; other site"
/db_xref="CDD:73150"
misc_feature 751..753
/gene="pol"
/note="nucleic acid binding site; other site"
/db_xref="CDD:73150"
misc_feature 1009..1218
/gene="pol"
/note="Reverse transcriptase thumb domain; Region:
RVT_thumb; pfam06817"
/db_xref="CDD:115473"
misc_feature <1..297
/gene="pol"
/note="protease"
misc_feature 298..>1302
/gene="pol"
/note="reverse transcriptase"
BASE COUNT 512 a 211 c 281 g 296 t 2 other
ORIGIN
1 cctcaaatca ctctttggca acgacccctt gtcacaataa aagtaggggg ccagataaaa
61 gaggctctct tagatacagg agcagatgat acagtattag aagaaataga tttgccagga
121 aaatggaaac caaaaatgat aggaggaatt ggaggtttta tcaaagtaag acartatgag
181 caagtagtta tagaaatttg tggaaaaaag gctataggta cagtattagt aggccctaca
241 cctatcaaca taattggaag aaatttgttg actcagcttg ggtgcacact aaattttcca
301 attagtccca ttgaaactgt accagtaaaa ttaaagccag gaatggatgg cccaaaggtt
361 aaacaatggc cattaacaga agagaaaata aaagcattaa cagaaatttg tgcagaaatg
421 gagaaggaag gaaaaattac aaaaattggg cctgaaaatc catataacac tccagtattt
481 gccataaaaa agaaggacag tactaagtgg agaaaattag tagattttag ggaactcaat
541 aaaagaactc aggacttttg ggaagttcaa ttaggaatac cacacccagc agggttaaaa
601 aagaaaaaat cagtgacagt actggatgtg ggggatgcat atttttcagt tcctttacat
661 gaagacttca ggaaatatac tgcattcacc atacctagta taaacaatga gacaccagga
721 attagatatc aatataatgt gcttccacag ggatggaaag gatcaccagc aatattccag
781 agtagcatga caaaaatctt agagcccttt agggcacaaa acccaggaat ggttatctat
841 caatatatgg atgacttgta tgtaggatct gacttagaaa tagggcaaca tagagcaaaa
901 atagaggagt taagagagca tttattgaaa tggggattta ccacaccaga caaaaagcat
961 cagaaagaac ccccatttct ctggatgggg tatgaactcc atcctgacaa atggacagta
1021 cagcctatac agctgccaga caaggatagc tggactgtca atgatataca aaagttagtg
1081 ggaaaattaa actgggcaag tcagatttac ccagggatta aagtaaagca actgtgtaaa
1141 ctccttaggg gagccaaagc attaacagac atagtaccac tgactgaaga agcagaatta
1201 gaattggcag agaacaggga aattttaaaa gaaccagtac atggagtata ttatgaccca
1261 tcaaaagact taatagctga aatacagaaa caggggtatg ay
//
last modified: Tue May 31 10:56 2022