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LOCUS GQ398834 1302 bp DNA linear VRL 29-SEP-2009
DEFINITION HIV-1 isolate 003594880688732 from Norway pol protein (pol) gene,
partial cds
ACCESSION GQ398834
VERSION GQ398834.1 GI:259377652
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1302)
Show all sequences for reference 1
AUTHORS Vercauteren,J., Wensing,A.M.J., Van de Vijver,D.A.M.C., Albert,J.,
Balotta,C., Hamouda,O., Kucherer,C., Struck,D., Schmit,J.-C.,
Asjo,B., Bruckova,M., Camacho,R.J., Clotet,B., Coughlan,S.,
Grossman,Z., Horban,A., Korn,K., Kostrikis,L., Nielsen,C.,
Paraskevis,D., Poljak,M., Puchhammer-Stockl,E., Riva,C., Ruiz,L.,
Salminen,M., Schuurman,R., Sonnerborg,A., Stanekova,D.,
Stanojevic,M., Vandamme,A.-M. and Boucher,C.A.B.
CONSRTM SPREAD / EuropeHIVResistance
TITLE Transmission of drug-resistant HIV-1 is stabilizing in Europe.
JOURNAL J. Infect. Dis.. 200(10); 1503-8 (2009)
PUBMED 19835478
REFERENCE 2 (bases 1 to 1302)
Show all sequences for reference 2
AUTHORS Vercauteren,J., Wensing,A.M.J., Van de Vijver,D.A.M.C., Albert,J.,
Balotta,C., Hamouda,O., Kuecherer,C., Struck,D., Schmit,J.-C.,
Asjo,B., Bruckova,M., Camacho,R., Clotet,B., Coughlan,S.,
Grossman,Z., Horban,A., Korn,K., Kostrikis,L.G., Nielsen,C.,
Paraskevis,D., Poljak,M., Puchhammer-Stoeckl,E., Riva,C., Ruiz,L.,
Salminen,M., Schuurman,R., Soennerborg,A., Stanekova,D.,
Stanojevic,M., Vandamme,A.-M. and Boucher,C.A.
CONSRTM SPREAD / EuropeHIVResistance
TITLE Direct Submission
JOURNAL Submitted (15-JUL-2009) Rega Institute for Medical Research and
University Hospitals, Katholieke Universiteit Leuven, Leuven,
Belgium
FEATURES Location/Qualifiers
source 1..1302
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="gskinluLfhm4ozz"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="Norway"
/collection_date="2004"
/collected_by="Dr. B. Asjo"
gene <1..>1302
/gene="pol"
CDS <1..>1302
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="ACW57082.1"
/db_xref="GI:259377653"
/translation="PQITLWQRPIVTIKVGGQLKEALLDTGADDTVLEDINLPGRWKP
KMIGGIGGFIKVRQYDQXTVEICGHKAIGTVLVGPTPVNIIGRNLLTQLGCTLNFPIS
PIDTVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVF
AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
LDPDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQCSMTKILEPFRKQNPD
IVIYQYMDDLYVGSDLEIGQHRTKIEELREHLLKWGFTTPDKKHQKEPPFLWMGYELH
PDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYAGIKVRQLCKLLRGAKSLTEVI
XLTXEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGLG"
misc_feature 31..273
/gene="pol"
/note="Retropepsins, pepsin-like aspartate proteases;
Region: HIV_retropepsin_like; cd05482"
/db_xref="CDD:133149"
misc_feature order(73..75,79..81,85..87,136..144,250..252)
/gene="pol"
/note="inhibitor binding site; inhibition site"
/db_xref="CDD:133149"
misc_feature 73..81
/gene="pol"
/note="catalytic motif; other site"
/db_xref="CDD:133149"
misc_feature 73..75
/gene="pol"
/note="Catalytic residue; other site"
/db_xref="CDD:133149"
misc_feature order(136..150,154..168)
/gene="pol"
/note="Active site flap; active site"
/db_xref="CDD:133149"
misc_feature 349..999
/gene="pol"
/note="RT_Rtv: Reverse transcriptases (RTs) from
retroviruses (Rtvs). RTs catalyze the conversion of
single-stranded RNA into double-stranded viral DNA for
integration into host chromosomes. Proteins in this
subfamily contain long terminal repeats (LTRs) and...;
Region: RT_Rtv; cd01645"
/db_xref="CDD:73152"
misc_feature order(367..372,478..480,490..492,511..513,517..525,529..53
1,538..540,562..564,568..573,577..579,625..642,748..753,75
7..759,766..768,844..846,850..855,985..990)
/gene="pol"
/note="active site"
/db_xref="CDD:73152"
misc_feature order(367..372,517..525,529..531,538..540,562..564,568..57
3,577..579,751..753,757..759,766..768,844..846,985..990)
/gene="pol"
/note="DNA binding site"
/db_xref="CDD:73152"
misc_feature 457..999
/gene="pol"
/note="Reverse transcriptase (RNA-dependent DNA
polymerase); Region: RVT_1; pfam00078"
/db_xref="CDD:109146"
misc_feature order(490..492,511..513,625..642,748..750,850..852)
/gene="pol"
/note="dNTP binding site; other site"
/db_xref="CDD:73152"
misc_feature order(595..606,832..834,838..840,859..861,865..867,976..97
8)
/gene="pol"
/note="NNRTI binding site; other site"
/db_xref="CDD:73152"
misc_feature 1009..>1158
/gene="pol"
/note="Reverse transcriptase thumb domain; Region:
RVT_thumb; pfam06817"
/db_xref="CDD:115473"
misc_feature <1..297
/gene="pol"
/note="protease"
misc_feature 298..>1302
/gene="pol"
/note="reverse transcriptase"
BASE COUNT 501 a 213 c 281 g 301 t 6 other
ORIGIN
1 cctcaaatca ctctttggca gcgacccatc gtcacaataa aagtaggggg gcagctaaag
61 gaagctctat tagatacagg agcagatgat acagtattag aagacataaa tttgccagga
121 agatggaaac caaaaatgat agggggaatt ggaggtttta tcaaagtrag acagtatgat
181 cagrtaactg tagaaatctg tggacataaa gctataggta cagtgttagt aggacctaca
241 cctgtcaata taattggaag aaatctgttg actcagcttg gttgcacttt aaattttccc
301 attagtccta ttgacactgt accagtaaaa ttaaagccag gaatggatgg cccaaaagtt
361 aaacaatggc cattgacaga agaaaaaata aaagcattag tagaaatttg tacagaaatg
421 gaaaaggaag ggaaaatttc aaaaattggg cctgaaaatc catataatac tccagtgttt
481 gccataaaga aaaaagacag tactaaatgg agaaaactag tagatttcag agaacttaat
541 aagagaactc aagacttctg ggaagttcaa ttaggaatac cacatcccgc agggttgaaa
601 aagaaaaart cagtaacagt actggatgtg ggtgatgcat atttttcagt tcccttagat
661 ccagacttca ggaagtatac tgcatttact atacccagta taaacaatga gacaccaggg
721 attagatatc aatacaatgt gcttccacag ggatggaaag gatcaccagc aatattccaa
781 tgtagcatga caaaaatctt ggagcctttt agaaaacaaa atccagacat agttatctat
841 caatacatgg atgatttgta tgtagggtct gacttagaaa taggacagca tagaacaaaa
901 atagaggaac tgagagaaca tctgttgaaa tggggattta ccacaccaga taaaaagcat
961 cagaaagagc ctccattcct ttggatgggt tatgaactcc atcctgataa atggacagta
1021 caacccatag tgctgccaga aaaagacagc tggactgtca atgacataca gaagttagtg
1081 ggaaaattga aytgggcaag ccagatttat gcagggatta aagtaaggca attatgtaaa
1141 ctccttaggg gagccaaatc actaacagaa gtaatamcac taacagwtga agcagagtta
1201 gaactggcag aaaacaggga gattctaaaa gaaccagtac atggggtata ttatgaccca
1261 tcaaaagact taatagcaga aatacagaag cagggactag gc
//
last modified: Tue May 31 10:56 2022