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LOCUS	    GQ398834		    1302 bp    DNA     linear	VRL 29-SEP-2009
DEFINITION  HIV-1 isolate 003594880688732 from Norway pol protein (pol) gene,
	    partial cds
ACCESSION   GQ398834
VERSION     GQ398834.1 GI:259377652
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1302)
            Show all sequences for reference 1
  AUTHORS   Vercauteren,J., Wensing,A.M.J., Van de Vijver,D.A.M.C., Albert,J.,
	    Balotta,C., Hamouda,O., Kucherer,C., Struck,D., Schmit,J.-C.,
	    Asjo,B., Bruckova,M., Camacho,R.J., Clotet,B., Coughlan,S.,
	    Grossman,Z., Horban,A., Korn,K., Kostrikis,L., Nielsen,C.,
	    Paraskevis,D., Poljak,M., Puchhammer-Stockl,E., Riva,C., Ruiz,L.,
	    Salminen,M., Schuurman,R., Sonnerborg,A., Stanekova,D.,
	    Stanojevic,M., Vandamme,A.-M. and Boucher,C.A.B.
  CONSRTM   SPREAD / EuropeHIVResistance
  TITLE     Transmission of drug-resistant HIV-1 is stabilizing in Europe.
  JOURNAL   J. Infect. Dis.. 200(10); 1503-8 (2009)
  PUBMED    19835478
REFERENCE   2 (bases 1 to 1302)
            Show all sequences for reference 2
  AUTHORS   Vercauteren,J., Wensing,A.M.J., Van de Vijver,D.A.M.C., Albert,J.,
	    Balotta,C., Hamouda,O., Kuecherer,C., Struck,D., Schmit,J.-C.,
	    Asjo,B., Bruckova,M., Camacho,R., Clotet,B., Coughlan,S.,
	    Grossman,Z., Horban,A., Korn,K., Kostrikis,L.G., Nielsen,C.,
	    Paraskevis,D., Poljak,M., Puchhammer-Stoeckl,E., Riva,C., Ruiz,L.,
	    Salminen,M., Schuurman,R., Soennerborg,A., Stanekova,D.,
	    Stanojevic,M., Vandamme,A.-M. and Boucher,C.A.
  CONSRTM   SPREAD / EuropeHIVResistance
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUL-2009) Rega Institute for Medical Research and
	    University Hospitals, Katholieke Universiteit Leuven, Leuven,
	    Belgium
FEATURES             Location/Qualifiers
     source	     1..1302
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolate="gskinluLfhm4ozz"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="Norway"
		     /collection_date="2004"
		     /collected_by="Dr. B. Asjo"
     gene	     <1..>1302
		     /gene="pol"
     CDS	     <1..>1302
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="ACW57082.1"
		     /db_xref="GI:259377653"
		     /translation="PQITLWQRPIVTIKVGGQLKEALLDTGADDTVLEDINLPGRWKP
		     KMIGGIGGFIKVRQYDQXTVEICGHKAIGTVLVGPTPVNIIGRNLLTQLGCTLNFPIS
		     PIDTVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVF
		     AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
		     LDPDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQCSMTKILEPFRKQNPD
		     IVIYQYMDDLYVGSDLEIGQHRTKIEELREHLLKWGFTTPDKKHQKEPPFLWMGYELH
		     PDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYAGIKVRQLCKLLRGAKSLTEVI
		     XLTXEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGLG"
     misc_feature    31..273
		     /gene="pol"
		     /note="Retropepsins, pepsin-like aspartate proteases;
		     Region: HIV_retropepsin_like; cd05482"
		     /db_xref="CDD:133149"
     misc_feature    order(73..75,79..81,85..87,136..144,250..252)
		     /gene="pol"
		     /note="inhibitor binding site; inhibition site"
		     /db_xref="CDD:133149"
     misc_feature    73..81
		     /gene="pol"
		     /note="catalytic motif; other site"
		     /db_xref="CDD:133149"
     misc_feature    73..75
		     /gene="pol"
		     /note="Catalytic residue; other site"
		     /db_xref="CDD:133149"
     misc_feature    order(136..150,154..168)
		     /gene="pol"
		     /note="Active site flap; active site"
		     /db_xref="CDD:133149"
     misc_feature    349..999
		     /gene="pol"
		     /note="RT_Rtv: Reverse transcriptases (RTs) from
		     retroviruses (Rtvs). RTs catalyze the conversion of
		     single-stranded RNA into double-stranded viral DNA for
		     integration into host chromosomes. Proteins in this
		     subfamily contain long terminal repeats (LTRs) and...;
		     Region: RT_Rtv; cd01645"
		     /db_xref="CDD:73152"
     misc_feature    order(367..372,478..480,490..492,511..513,517..525,529..53
		     1,538..540,562..564,568..573,577..579,625..642,748..753,75
		     7..759,766..768,844..846,850..855,985..990)
		     /gene="pol"
		     /note="active site"
		     /db_xref="CDD:73152"
     misc_feature    order(367..372,517..525,529..531,538..540,562..564,568..57
		     3,577..579,751..753,757..759,766..768,844..846,985..990)
		     /gene="pol"
		     /note="DNA binding site"
		     /db_xref="CDD:73152"
     misc_feature    457..999
		     /gene="pol"
		     /note="Reverse transcriptase (RNA-dependent DNA
		     polymerase); Region: RVT_1; pfam00078"
		     /db_xref="CDD:109146"
     misc_feature    order(490..492,511..513,625..642,748..750,850..852)
		     /gene="pol"
		     /note="dNTP binding site; other site"
		     /db_xref="CDD:73152"
     misc_feature    order(595..606,832..834,838..840,859..861,865..867,976..97
		     8)
		     /gene="pol"
		     /note="NNRTI binding site; other site"
		     /db_xref="CDD:73152"
     misc_feature    1009..>1158
		     /gene="pol"
		     /note="Reverse transcriptase thumb domain; Region:
		     RVT_thumb; pfam06817"
		     /db_xref="CDD:115473"
     misc_feature    <1..297
		     /gene="pol"
		     /note="protease"
     misc_feature    298..>1302
		     /gene="pol"
		     /note="reverse transcriptase"
BASE COUNT	501 a	 213 c	  281 g    301 t      6 other
ORIGIN
       1 cctcaaatca ctctttggca gcgacccatc gtcacaataa aagtaggggg gcagctaaag 
      61 gaagctctat tagatacagg agcagatgat acagtattag aagacataaa tttgccagga 
     121 agatggaaac caaaaatgat agggggaatt ggaggtttta tcaaagtrag acagtatgat 
     181 cagrtaactg tagaaatctg tggacataaa gctataggta cagtgttagt aggacctaca 
     241 cctgtcaata taattggaag aaatctgttg actcagcttg gttgcacttt aaattttccc 
     301 attagtccta ttgacactgt accagtaaaa ttaaagccag gaatggatgg cccaaaagtt 
     361 aaacaatggc cattgacaga agaaaaaata aaagcattag tagaaatttg tacagaaatg 
     421 gaaaaggaag ggaaaatttc aaaaattggg cctgaaaatc catataatac tccagtgttt 
     481 gccataaaga aaaaagacag tactaaatgg agaaaactag tagatttcag agaacttaat 
     541 aagagaactc aagacttctg ggaagttcaa ttaggaatac cacatcccgc agggttgaaa 
     601 aagaaaaart cagtaacagt actggatgtg ggtgatgcat atttttcagt tcccttagat 
     661 ccagacttca ggaagtatac tgcatttact atacccagta taaacaatga gacaccaggg 
     721 attagatatc aatacaatgt gcttccacag ggatggaaag gatcaccagc aatattccaa 
     781 tgtagcatga caaaaatctt ggagcctttt agaaaacaaa atccagacat agttatctat 
     841 caatacatgg atgatttgta tgtagggtct gacttagaaa taggacagca tagaacaaaa 
     901 atagaggaac tgagagaaca tctgttgaaa tggggattta ccacaccaga taaaaagcat 
     961 cagaaagagc ctccattcct ttggatgggt tatgaactcc atcctgataa atggacagta 
    1021 caacccatag tgctgccaga aaaagacagc tggactgtca atgacataca gaagttagtg 
    1081 ggaaaattga aytgggcaag ccagatttat gcagggatta aagtaaggca attatgtaaa 
    1141 ctccttaggg gagccaaatc actaacagaa gtaatamcac taacagwtga agcagagtta 
    1201 gaactggcag aaaacaggga gattctaaaa gaaccagtac atggggtata ttatgaccca 
    1261 tcaaaagact taatagcaga aatacagaag cagggactag gc
//
last modified: Tue May 31 10:56 2022


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