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LOCUS GQ398828 1259 bp DNA linear VRL 29-SEP-2009
DEFINITION HIV-1 isolate 000508723909344 from Portugal nonfunctional pol
protein (pol) gene, partial sequence
ACCESSION GQ398828
VERSION GQ398828.1 GI:259377641
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1259)
Show all sequences for reference 1
AUTHORS Vercauteren,J., Wensing,A.M.J., Van de Vijver,D.A.M.C., Albert,J.,
Balotta,C., Hamouda,O., Kucherer,C., Struck,D., Schmit,J.-C.,
Asjo,B., Bruckova,M., Camacho,R.J., Clotet,B., Coughlan,S.,
Grossman,Z., Horban,A., Korn,K., Kostrikis,L., Nielsen,C.,
Paraskevis,D., Poljak,M., Puchhammer-Stockl,E., Riva,C., Ruiz,L.,
Salminen,M., Schuurman,R., Sonnerborg,A., Stanekova,D.,
Stanojevic,M., Vandamme,A.-M. and Boucher,C.A.B.
CONSRTM SPREAD / EuropeHIVResistance
TITLE Transmission of drug-resistant HIV-1 is stabilizing in Europe.
JOURNAL J. Infect. Dis.. 200(10); 1503-8 (2009)
PUBMED 19835478
REFERENCE 2 (bases 1 to 1259)
Show all sequences for reference 2
AUTHORS Vercauteren,J., Wensing,A.M.J., Van de Vijver,D.A.M.C., Albert,J.,
Balotta,C., Hamouda,O., Kuecherer,C., Struck,D., Schmit,J.-C.,
Asjo,B., Bruckova,M., Camacho,R., Clotet,B., Coughlan,S.,
Grossman,Z., Horban,A., Korn,K., Kostrikis,L.G., Nielsen,C.,
Paraskevis,D., Poljak,M., Puchhammer-Stoeckl,E., Riva,C., Ruiz,L.,
Salminen,M., Schuurman,R., Soennerborg,A., Stanekova,D.,
Stanojevic,M., Vandamme,A.-M. and Boucher,C.A.
CONSRTM SPREAD / EuropeHIVResistance
TITLE Direct Submission
JOURNAL Submitted (15-JUL-2009) Rega Institute for Medical Research and
University Hospitals, Katholieke Universiteit Leuven, Leuven,
Belgium
FEATURES Location/Qualifiers
source 1..1259
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="g8ur0oCoJ6vKeZq"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="Portugal"
/collection_date="2003"
/collected_by="R. Camacho, MD"
gene <1..>1259
/gene="pol"
misc_feature <1..>1259
/gene="pol"
/note="nonfunctional pol protein due to mutation"
misc_feature <1..297
/gene="pol"
/note="protease"
misc_feature 298..>1259
/gene="pol"
/note="reverse transcriptase"
BASE COUNT 488 a 208 c 268 g 291 t 4 other
ORIGIN
1 cctcaaatca ctctttggca gcgacccata gtcacagtaa gaataggggg acagctaata
61 gaagccctgt tagacacagg agcagatgat acagtgttag aagatataaa cttaccagga
121 aaatggaaac caaaaatgat agggggaatt ggtggtttta tcaaagtaag acagtatgat
181 caaatactta tagaaatttg tggaaaaaag gctataggga cagtattagt aggacctaca
241 cctatcaaca taattgggag aaatatgttg actcagattg gttgtacctt aaatcttcca
301 attagcccta ttgaaactgt accagtaaaa ttaaagccag gaatggatgg tccaagggtt
361 aaacaatggc cattgacaga agaaaaaata aaagccttaa cagacatttg tacagaaatg
421 gaaaaggaag gaaaaatttc aaaaattgga cctgaaaatc catataacac tccaatattt
481 gccataaaga aaaaagacag tactaaatgg agaaaattgg tagattttag agagctcaat
541 aaaagaactc aagacttctg ggaggtccaa ttaggaatac ctcatccctc ggggttaaaa
601 aagaaaaaat cagtaacagt gctagatgta ggggatgcat acttttcagt gcccttagat
661 gaaagcttta gaaagtatac tgcattcact atacctagta caaataatga gacaccaggg
721 attagatatc agtacaatgt gcttccacag ggatggaaag gatcaccagc aatatttcaa
781 agtagcatga caaaaatctt agagcccttt agaatgaaga atccagacat agtgatctac
841 caatatatgg atgatttata tgtaggttct gacttagaaa tagggcagca tagagcaaaa
901 atagaggagt taagaaaaca tctgttaagc tgggggttta ccacaccaga taaaaagcat
961 cagaaagaac ctccattcct ttggatggga tatgagctcc atcctgataa atggacagta
1021 caacctatac agctgccaga caaagaaagc tggactgtca atgatataca aaagttagtg
1081 ggaaagctaa attgggcaag ccagatttat ccagggatta argtaaawcr actatgtaaa
1141 ctccttaggg gagccaaagc attaacagac atagtaccac taactgcaga agcagaattg
1201 gaattggcag agaacaggga gattctaaaa gaaccwgtac atggagtcta ttaggaccc
//
last modified: Tue May 31 10:56 2022