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LOCUS GQ344981 1320 bp DNA linear VRL 09-AUG-2009
DEFINITION HIV-1 isolate 06CM06BDHS035 from Cameroon reverse transcriptase
(Pol) gene, partial cds
ACCESSION GQ344981
VERSION GQ344981.1 GI:255116588
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1320)
Show all sequences for reference 1
AUTHORS Burda,S.T., Viswanath,R., Zhao,J., Kinge,T., Anyangwe,C.,
Tinyami,E.T., Haldar,B., Powell,R.L.R., Jarido,V., Hewlett,I.K. and
Nyambi,P.N.
TITLE HIV-1 reverse transcriptase drug-resistance mutations in
chronically infected individuals receiving or naive to HAART in
Cameroon.
JOURNAL J. Med. Virol.. 82(2); 187-96 (2010)
PUBMED 20029816
REFERENCE 2 (bases 1 to 1320)
Show all sequences for reference 2
AUTHORS Nyambi,P.N., Burda,S.T., Viswanath,R., Zhao,J., Kinge,T.,
Haldar,B., Powell,R.L.R., Jarido,V. and Hewlett,I.K.
TITLE Direct Submission
JOURNAL Submitted (01-JUL-2009) Pathology, New York University School of
Medicine, c/o VAMC 423 East 23rd Street, New York, NY 10010, USA
FEATURES Location/Qualifiers
source 1..1320
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="06CM06BDHS035"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="Cameroon"
/collection_date="30-Jan-2007"
/note="subtype: CRF02_AG"
gene <1..>1320
/gene="Pol"
CDS <1..>1320
/gene="Pol"
/codon_start="1"
/transl_table="1"
/product="reverse transcriptase"
/protein_id="ACU01332.1"
/db_xref="GI:255116589"
/translation="PISSIETVPVKLKPGMDGPKVKQWPLTEEKIKALTDICIEMEKE
GKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKK
KKSVTVLDVGDAYFSVPLDKEFRKYTAFTIPSVNNETPGIRYQYNVLPQGWKGSPAIF
QASMTKILEPFRTKNPEIVIYQYMDDLYVGSDLEIGQHRAKVEELRQHLLRWGLTTPD
KKHQKEPPFLWMGYELHPDKWTVQPIQLPEKDSWTVNDIQKLVGKLNWASQIYAGIKV
RQLCKLIRGAKALTEIVTMTKEAELELAENREILKEPVHGVYYDPAKDLVAEIQKQGQ
DQWTYQIYQEPFKNLKTGKYAKRRSAHTNDVKQLTEVVQKVSTESIVIWGKTPKFRLP
IQKETWEAWWMEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETF"
BASE COUNT 528 a 215 c 285 g 292 t
ORIGIN
1 ccaattagtt ctattgaaac tgtgccagta aaattgaagc caggaatgga tggtccaaag
61 gttaaacaat ggccattgac agaagaaaaa ataaaagcat taacagacat ttgtatagag
121 atggaaaagg aaggaaaaat ttcaaaaatt gggcctgaaa atccatacaa tactccagta
181 tttgccataa agaaaaaaga tagtactaaa tggagaaaat tagtagattt tagagaactc
241 aataaaagaa ctcaagactt ctgggaggtc caattaggaa tacctcatcc cgcgggatta
301 aaaaagaaaa aatcagtaac agtactagat gtgggggatg catatttttc agttccctta
361 gataaagaat ttagaaagta cactgcattc actataccta gtgtaaataa tgagacacca
421 gggattagat atcagtacaa tgtgcttcca cagggatgga aaggatcacc agcaatattt
481 caggcaagca tgacaaaaat cttagagccc tttagaacaa aaaatccaga gatagtgatc
541 taccaatata tggatgattt atatgtagga tcagacttag agatagggca gcatagagca
601 aaagtagagg agttgagaca acatctactg agatggggat taaccacacc agacaaaaaa
661 catcagaagg aacctccatt tctttggatg ggctatgaac tccatcctga caaatggaca
721 gtccagccta tacagctacc agaaaaggac agctggactg tcaatgatat acagaaatta
781 gtgggaaaac taaattgggc aagtcagatt tatgcaggaa ttaaagtaag gcaactgtgt
841 aaactcatca ggggagccaa agcactgaca gagatagtaa caatgactaa agaagcagaa
901 ttagaattgg cagagaacag ggaaattcta aaagaacctg tacatggggt atattatgac
961 ccggcaaaag acttagtagc agaaatacag aaacaagggc aagaccaatg gacatatcaa
1021 atttatcaag aaccatttaa aaatctaaaa acaggaaaat atgcaaaaag gaggtctgcc
1081 cacactaatg atgtaaaaca attaacagag gtagtgcaaa aggtgtctac tgaaagcata
1141 gtaatatggg gaaagacccc taaatttaga ttacccatac aaaaagaaac atgggaagca
1201 tggtggatgg agtattggca ggctacctgg attcctgaat gggagtttgt caatacccct
1261 cctctagtaa agttatggta ccagttagag aaggaaccca tagtaggagc agaaactttc
//
last modified: Tue May 31 10:56 2022