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LOCUS	    GQ344981		    1320 bp    DNA     linear	VRL 09-AUG-2009
DEFINITION  HIV-1 isolate 06CM06BDHS035 from Cameroon reverse transcriptase
	    (Pol) gene, partial cds
ACCESSION   GQ344981
VERSION     GQ344981.1 GI:255116588
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1320)
            Show all sequences for reference 1
  AUTHORS   Burda,S.T., Viswanath,R., Zhao,J., Kinge,T., Anyangwe,C.,
	    Tinyami,E.T., Haldar,B., Powell,R.L.R., Jarido,V., Hewlett,I.K. and
	    Nyambi,P.N.
  TITLE     HIV-1 reverse transcriptase drug-resistance mutations in
	    chronically infected individuals receiving or naive to HAART in
	    Cameroon.
  JOURNAL   J. Med. Virol.. 82(2); 187-96 (2010)
  PUBMED    20029816
REFERENCE   2 (bases 1 to 1320)
            Show all sequences for reference 2
  AUTHORS   Nyambi,P.N., Burda,S.T., Viswanath,R., Zhao,J., Kinge,T.,
	    Haldar,B., Powell,R.L.R., Jarido,V. and Hewlett,I.K.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-JUL-2009) Pathology, New York University School of
	    Medicine, c/o VAMC 423 East 23rd Street, New York, NY 10010, USA
FEATURES             Location/Qualifiers
     source	     1..1320
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolate="06CM06BDHS035"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="Cameroon"
		     /collection_date="30-Jan-2007"
		     /note="subtype: CRF02_AG"
     gene	     <1..>1320
		     /gene="Pol"
     CDS	     <1..>1320
		     /gene="Pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="reverse transcriptase"
		     /protein_id="ACU01332.1"
		     /db_xref="GI:255116589"
		     /translation="PISSIETVPVKLKPGMDGPKVKQWPLTEEKIKALTDICIEMEKE
		     GKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKK
		     KKSVTVLDVGDAYFSVPLDKEFRKYTAFTIPSVNNETPGIRYQYNVLPQGWKGSPAIF
		     QASMTKILEPFRTKNPEIVIYQYMDDLYVGSDLEIGQHRAKVEELRQHLLRWGLTTPD
		     KKHQKEPPFLWMGYELHPDKWTVQPIQLPEKDSWTVNDIQKLVGKLNWASQIYAGIKV
		     RQLCKLIRGAKALTEIVTMTKEAELELAENREILKEPVHGVYYDPAKDLVAEIQKQGQ
		     DQWTYQIYQEPFKNLKTGKYAKRRSAHTNDVKQLTEVVQKVSTESIVIWGKTPKFRLP
		     IQKETWEAWWMEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETF"
BASE COUNT	528 a	 215 c	  285 g    292 t
ORIGIN
       1 ccaattagtt ctattgaaac tgtgccagta aaattgaagc caggaatgga tggtccaaag 
      61 gttaaacaat ggccattgac agaagaaaaa ataaaagcat taacagacat ttgtatagag 
     121 atggaaaagg aaggaaaaat ttcaaaaatt gggcctgaaa atccatacaa tactccagta 
     181 tttgccataa agaaaaaaga tagtactaaa tggagaaaat tagtagattt tagagaactc 
     241 aataaaagaa ctcaagactt ctgggaggtc caattaggaa tacctcatcc cgcgggatta 
     301 aaaaagaaaa aatcagtaac agtactagat gtgggggatg catatttttc agttccctta 
     361 gataaagaat ttagaaagta cactgcattc actataccta gtgtaaataa tgagacacca 
     421 gggattagat atcagtacaa tgtgcttcca cagggatgga aaggatcacc agcaatattt 
     481 caggcaagca tgacaaaaat cttagagccc tttagaacaa aaaatccaga gatagtgatc 
     541 taccaatata tggatgattt atatgtagga tcagacttag agatagggca gcatagagca 
     601 aaagtagagg agttgagaca acatctactg agatggggat taaccacacc agacaaaaaa 
     661 catcagaagg aacctccatt tctttggatg ggctatgaac tccatcctga caaatggaca 
     721 gtccagccta tacagctacc agaaaaggac agctggactg tcaatgatat acagaaatta 
     781 gtgggaaaac taaattgggc aagtcagatt tatgcaggaa ttaaagtaag gcaactgtgt 
     841 aaactcatca ggggagccaa agcactgaca gagatagtaa caatgactaa agaagcagaa 
     901 ttagaattgg cagagaacag ggaaattcta aaagaacctg tacatggggt atattatgac 
     961 ccggcaaaag acttagtagc agaaatacag aaacaagggc aagaccaatg gacatatcaa 
    1021 atttatcaag aaccatttaa aaatctaaaa acaggaaaat atgcaaaaag gaggtctgcc 
    1081 cacactaatg atgtaaaaca attaacagag gtagtgcaaa aggtgtctac tgaaagcata 
    1141 gtaatatggg gaaagacccc taaatttaga ttacccatac aaaaagaaac atgggaagca 
    1201 tggtggatgg agtattggca ggctacctgg attcctgaat gggagtttgt caatacccct 
    1261 cctctagtaa agttatggta ccagttagag aaggaaccca tagtaggagc agaaactttc 
//
last modified: Tue May 31 10:56 2022


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