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LOCUS GQ252769 402 bp DNA linear VRL 12-AUG-2009
DEFINITION HIV-1 isolate E27755B1 from Uganda envelope glycoprotein (env)
gene, partial cds
ACCESSION GQ252769
VERSION GQ252769.1 GI:255669903
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 402)
Show all sequences for reference 1
AUTHORS Kiwanuka,N., Laeyendecker,O., Quinn,T.C., Wawer,M.J., Shepherd,J.,
Robb,M., Kigozi,G., Kagaayi,J., Serwadda,D., Makumbi,F.E.,
Reynolds,S.J. and Gray,R.H.
TITLE HIV-1 subtypes and differences in heterosexual HIV transmission
among HIV-discordant couples in Rakai, Uganda.
JOURNAL AIDS. 23(18); 2479-84 (2009)
PUBMED 19841572
REFERENCE 2 (bases 1 to 402)
Show all sequences for reference 2
AUTHORS Kiwanuka,N., Layendecker,O., Quinn,T.C., Wawer,M.J., Shepherd,J.,
Robb,M., Kigozi,G., Kagaayi,J., Serwadda,D., Makumbi,F.E.,
Reynolds,S.J. and Gray,R.H.
TITLE Direct Submission
JOURNAL Submitted (09-JUN-2009) School of Public Health, Makerere
University, Kampala, Uganda
REFERENCE 3
Show all sequences for reference 3
AUTHORS Gray,R.R., Tatem,A.J., Lamers,S., Hou,W., Laeyendecker,O.,
Serwadda,D., Sewankambo,N., Gray,R.H., Wawer,M., Quinn,T.C.,
Goodenow,M.M. and Salemi,M.
TITLE Spatial phylodynamics of HIV-1 epidemic emergence in east Africa.
JOURNAL AIDS. 23(14); F9-F17 (2009)
PUBMED 19644346
REFERENCE 4
Show all sequences for reference 4
AUTHORS Collinson-Streng,A.N., Redd,A.D., Sewankambo,N.K., Serwadda,D.,
Rezapour,M., Lamers,S.L., Gray,R.H., Wawer,M.J., Quinn,T.C. and
Laeyendecker,O.
TITLE Geographic HIV type 1 subtype distribution in Rakai district,
Uganda.
JOURNAL AIDS Res. Hum. Retroviruses. 25(10); 1045-8 (2009)
PUBMED 19803713
FEATURES Location/Qualifiers
source 1..402
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="E27755B1"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="Uganda:Kyotera"
/collection_date="05-Feb-1997"
/note="subtype: A1"
gene <1..>402
/gene="env"
CDS <1..>402
/gene="env"
/note="gp41"
/codon_start="1"
/transl_table="1"
/product="envelope glycoprotein"
/protein_id="ACU26223.1"
/db_xref="GI:255669904"
/translation="LSGIVQQQSNLLRAIEAQQHLLKLTVWGIKQLQARVLAVERYLK
DQQLLGIWGCSGKLICTTSVPWNSSWSNKSLNEIWNNMTWLQWEKEISNYTNKIYDLL
EESQNQQEKNEQDLLALDKWANLWNWFDISNW"
BASE COUNT 136 a 73 c 99 g 94 t
ORIGIN
1 ttgtctggca tagtgcaaca gcaaagcaat ttgctgaggg ctatagaggc tcaacaacat
61 ctgttgaaac tcacggtctg gggcattaaa cagctccagg caagagtcct ggctgtggaa
121 agatacctaa aggatcaaca gctcctagga atttggggct gctctggaaa actcatatgc
181 accactagtg tgccctggaa ctctagttgg agtaataaat ctctgaatga gatatggaat
241 aatatgacct ggctgcagtg ggagaaagag attagtaatt acacaaacaa aatatatgac
301 ctacttgaag aatcgcagaa ccagcaggaa aagaatgaac aagacttatt agcattggac
361 aagtgggcaa atctgtggaa ttggtttgac atatcaaact gg
//
last modified: Tue May 31 10:56 2022