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LOCUS GQ252757 402 bp DNA linear VRL 12-AUG-2009
DEFINITION HIV-1 isolate C12412B1 from Uganda envelope glycoprotein (env)
gene, partial cds
ACCESSION GQ252757
VERSION GQ252757.1 GI:255669880
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 402)
Show all sequences for reference 1
AUTHORS Kiwanuka,N., Laeyendecker,O., Quinn,T.C., Wawer,M.J., Shepherd,J.,
Robb,M., Kigozi,G., Kagaayi,J., Serwadda,D., Makumbi,F.E.,
Reynolds,S.J. and Gray,R.H.
TITLE HIV-1 subtypes and differences in heterosexual HIV transmission
among HIV-discordant couples in Rakai, Uganda.
JOURNAL AIDS. 23(18); 2479-84 (2009)
PUBMED 19841572
REFERENCE 2 (bases 1 to 402)
Show all sequences for reference 2
AUTHORS Kiwanuka,N., Layendecker,O., Quinn,T.C., Wawer,M.J., Shepherd,J.,
Robb,M., Kigozi,G., Kagaayi,J., Serwadda,D., Makumbi,F.E.,
Reynolds,S.J. and Gray,R.H.
TITLE Direct Submission
JOURNAL Submitted (09-JUN-2009) School of Public Health, Makerere
University, Kampala, Uganda
REFERENCE 3
Show all sequences for reference 3
AUTHORS Gray,R.R., Tatem,A.J., Lamers,S., Hou,W., Laeyendecker,O.,
Serwadda,D., Sewankambo,N., Gray,R.H., Wawer,M., Quinn,T.C.,
Goodenow,M.M. and Salemi,M.
TITLE Spatial phylodynamics of HIV-1 epidemic emergence in east Africa.
JOURNAL AIDS. 23(14); F9-F17 (2009)
PUBMED 19644346
REFERENCE 4
Show all sequences for reference 4
AUTHORS Collinson-Streng,A.N., Redd,A.D., Sewankambo,N.K., Serwadda,D.,
Rezapour,M., Lamers,S.L., Gray,R.H., Wawer,M.J., Quinn,T.C. and
Laeyendecker,O.
TITLE Geographic HIV type 1 subtype distribution in Rakai district,
Uganda.
JOURNAL AIDS Res. Hum. Retroviruses. 25(10); 1045-8 (2009)
PUBMED 19803713
FEATURES Location/Qualifiers
source 1..402
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="C12412B1"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="Uganda:Kasasa-Sanje"
/collection_date="07-Jan-1997"
/note="subtype: D"
gene <1..>402
/gene="env"
CDS <1..>402
/gene="env"
/note="gp41"
/codon_start="1"
/transl_table="1"
/product="envelope glycoprotein"
/protein_id="ACU26212.1"
/db_xref="GI:255669881"
/translation="LSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARILAVESYLK
DQQLLGIWGCSGKHICTTTVPWNSSWSNKSLTEIWDNMTWMEWEREIDNYTGLIYSLI
EESQTQQEKNEQELLELDKWASLWNWFSITKW"
BASE COUNT 138 a 74 c 97 g 93 t
ORIGIN
1 ttgtctggca tagtgcaaca gcaaaacaac ttgctgaggg ctatagaggc gcaacaacat
61 ctgttgcaac tcacagtctg gggcattaaa cagctccagg caagaatcct ggctgtagaa
121 agttacctaa aggatcaaca gctcctagga atttggggtt gctctggaaa acacatttgc
181 accactactg tgccttggaa ctctagctgg agtaataaat ctctaacgga gatttgggat
241 aacatgacct ggatggagtg ggaaagagaa attgacaatt acacaggtct catatatagc
301 ctaattgaag aatcgcaaac ccagcaagaa aagaatgaac aagaactatt ggaattggac
361 aaatgggcaa gtttgtggaa ttggtttagc ataacaaaat gg
//
last modified: Tue May 31 10:56 2022