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LOCUS	    GQ252754		     402 bp    DNA     linear	VRL 12-AUG-2009
DEFINITION  HIV-1 isolate B25605B1 from Uganda envelope glycoprotein (env)
	    gene, partial cds
ACCESSION   GQ252754
VERSION     GQ252754.1 GI:255669874
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 402)
            Show all sequences for reference 1
  AUTHORS   Kiwanuka,N., Laeyendecker,O., Quinn,T.C., Wawer,M.J., Shepherd,J.,
	    Robb,M., Kigozi,G., Kagaayi,J., Serwadda,D., Makumbi,F.E.,
	    Reynolds,S.J. and Gray,R.H.
  TITLE     HIV-1 subtypes and differences in heterosexual HIV transmission
	    among HIV-discordant couples in Rakai, Uganda.
  JOURNAL   AIDS. 23(18); 2479-84 (2009)
  PUBMED    19841572
REFERENCE   2 (bases 1 to 402)
            Show all sequences for reference 2
  AUTHORS   Kiwanuka,N., Layendecker,O., Quinn,T.C., Wawer,M.J., Shepherd,J.,
	    Robb,M., Kigozi,G., Kagaayi,J., Serwadda,D., Makumbi,F.E.,
	    Reynolds,S.J. and Gray,R.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-JUN-2009) School of Public Health, Makerere
	    University, Kampala, Uganda
REFERENCE   3
            Show all sequences for reference 3
  AUTHORS   Gray,R.R., Tatem,A.J., Lamers,S., Hou,W., Laeyendecker,O.,
	    Serwadda,D., Sewankambo,N., Gray,R.H., Wawer,M., Quinn,T.C.,
	    Goodenow,M.M. and Salemi,M.
  TITLE     Spatial phylodynamics of HIV-1 epidemic emergence in east Africa.
  JOURNAL   AIDS. 23(14); F9-F17 (2009)
  PUBMED    19644346
REFERENCE   4
            Show all sequences for reference 4
  AUTHORS   Collinson-Streng,A.N., Redd,A.D., Sewankambo,N.K., Serwadda,D.,
	    Rezapour,M., Lamers,S.L., Gray,R.H., Wawer,M.J., Quinn,T.C. and
	    Laeyendecker,O.
  TITLE     Geographic HIV type 1 subtype distribution in Rakai district,
	    Uganda.
  JOURNAL   AIDS Res. Hum. Retroviruses. 25(10); 1045-8 (2009)
  PUBMED    19803713
FEATURES             Location/Qualifiers
     source	     1..402
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolate="B25605B1"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="Uganda:Kibale-Rakai"
		     /collection_date="08-Sep-1996"
		     /note="subtype: D"
     gene	     <1..>402
		     /gene="env"
     CDS	     <1..>402
		     /gene="env"
		     /note="gp41"
		     /codon_start="1"
		     /transl_table="1"
		     /product="envelope glycoprotein"
		     /protein_id="ACU26209.1"
		     /db_xref="GI:255669875"
		     /translation="LSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARVLAVESYLK
		     DQQLLGIWGCSGKHICTTNVPWNSSWSNKSLEVIWNNMTWMEWEREIDNYTGLIYSLI
		     EESQIQQEKNEQELLQLDKWASLWNWFSITKW"
BASE COUNT	139 a	  69 c	   99 g     95 t
ORIGIN
       1 ttgtctggta tagtgcaaca gcaaaacaat ttgctgaggg ctatagaggc gcaacagcat 
      61 ctgttgcaac tcacagtctg gggcattaaa cagctccagg caagagtcct ggctgtggaa 
     121 agctacctaa aggatcaaca gctcctagga atatggggtt gctctggaaa acacatttgc 
     181 accactaatg tgccctggaa ctctagctgg agtaataaat ctctagaggt gatttggaat 
     241 aacatgacct ggatggagtg ggaaagagaa attgacaatt atacagggtt aatatacagc 
     301 ttaattgaag aatcacaaat ccagcaagaa aagaatgaac aagaactatt gcaattggac 
     361 aaatgggcaa gtttgtggaa ttggtttagc ataacaaaat gg
//
last modified: Tue May 31 10:56 2022


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