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LOCUS	    GQ228289		     288 bp    RNA     linear	VRL 15-JUL-2009
DEFINITION  HIV-1 isolate patient 8080 from Malawi protease (pol) gene, partial
	    cds
ACCESSION   GQ228289
VERSION     GQ228289.1 GI:253720953
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 288)
            Show all sequences for reference 1
  AUTHORS   Hosseinipour,M.C., van Oosterhout,J.J., Weigel,R., Phiri,S.,
	    Kamwendo,D., Parkin,N., Fiscus,S.A., Nelson,J.A., Eron,J.J. and
	    Kumwenda,J.
  TITLE     The public health approach to identify antiretroviral therapy
	    failure: high-level nucleoside reverse transcriptase inhibitor
	    resistance among Malawians failing first-line antiretroviral
	    therapy
  JOURNAL   AIDS 23 (9), 1127-1134 (2009)
  PUBMED    19417582
REFERENCE   2 (bases 1 to 288)
            Show all sequences for reference 2
  AUTHORS   Nelson,J.A.E.
  TITLE     Direct Submission
  JOURNAL   Submitted (02-JUN-2009) Microbiology and Immunology, University of
	    North Carolina at Chapel Hill, CB 7290, Chapel Hill, NC 27599, USA
FEATURES             Location/Qualifiers
     source	     1..288
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="patient 8080"
		     /isolation_source="plasma"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="Malawi"
		     /collection_date="31-May-2007"
		     /note="subtype: C"
     gene	     <1..>288
		     /gene="pol"
     CDS	     <1..>288
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="protease"
		     /protein_id="ACT33843.1"
		     /db_xref="GI:253720954"
		     /translation="TLWQRPVVTIKIEGQLKEALLDTGADDTVLEEINLPGKWKPKMI
		     GGIGGFIKVRQYDQILIEICGKKAIGTVLVGPTPVNIIGRNMLTQLGCTLNF"
BASE COUNT	108 a	  40 c	   67 g     73 t
ORIGIN
       1 actctttggc aacgacccgt tgtcacaata aaaatagagg gccagctaaa agaggctctc 
      61 ttagacacag gagcagatga tacagtatta gaagaaataa atttgccagg aaaatggaaa 
     121 ccaaaaatga tagggggaat tgggggtttt attaaagtaa gacagtatga tcaaatactt 
     181 atagaaattt gtggaaaaaa ggctataggt acagtattgg tagggcctac acctgtcaac 
     241 ataattggaa gaaatatgtt gactcagctt gggtgtacac taaatttt
//
last modified: Tue May 31 10:56 2022


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