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LOCUS GQ228289 288 bp RNA linear VRL 15-JUL-2009
DEFINITION HIV-1 isolate patient 8080 from Malawi protease (pol) gene, partial
cds
ACCESSION GQ228289
VERSION GQ228289.1 GI:253720953
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 288)
Show all sequences for reference 1
AUTHORS Hosseinipour,M.C., van Oosterhout,J.J., Weigel,R., Phiri,S.,
Kamwendo,D., Parkin,N., Fiscus,S.A., Nelson,J.A., Eron,J.J. and
Kumwenda,J.
TITLE The public health approach to identify antiretroviral therapy
failure: high-level nucleoside reverse transcriptase inhibitor
resistance among Malawians failing first-line antiretroviral
therapy
JOURNAL AIDS 23 (9), 1127-1134 (2009)
PUBMED 19417582
REFERENCE 2 (bases 1 to 288)
Show all sequences for reference 2
AUTHORS Nelson,J.A.E.
TITLE Direct Submission
JOURNAL Submitted (02-JUN-2009) Microbiology and Immunology, University of
North Carolina at Chapel Hill, CB 7290, Chapel Hill, NC 27599, USA
FEATURES Location/Qualifiers
source 1..288
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="patient 8080"
/isolation_source="plasma"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="Malawi"
/collection_date="31-May-2007"
/note="subtype: C"
gene <1..>288
/gene="pol"
CDS <1..>288
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="protease"
/protein_id="ACT33843.1"
/db_xref="GI:253720954"
/translation="TLWQRPVVTIKIEGQLKEALLDTGADDTVLEEINLPGKWKPKMI
GGIGGFIKVRQYDQILIEICGKKAIGTVLVGPTPVNIIGRNMLTQLGCTLNF"
BASE COUNT 108 a 40 c 67 g 73 t
ORIGIN
1 actctttggc aacgacccgt tgtcacaata aaaatagagg gccagctaaa agaggctctc
61 ttagacacag gagcagatga tacagtatta gaagaaataa atttgccagg aaaatggaaa
121 ccaaaaatga tagggggaat tgggggtttt attaaagtaa gacagtatga tcaaatactt
181 atagaaattt gtggaaaaaa ggctataggt acagtattgg tagggcctac acctgtcaac
241 ataattggaa gaaatatgtt gactcagctt gggtgtacac taaatttt
//
last modified: Tue May 31 10:56 2022