View NCBI entry Download GenBank file Graphics View Download GFF3 File
LOCUS GQ228261 288 bp RNA linear VRL 15-JUL-2009
DEFINITION HIV-1 isolate patient 9359 from Malawi protease (pol) gene, partial
cds
ACCESSION GQ228261
VERSION GQ228261.1 GI:253720897
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 288)
Show all sequences for reference 1
AUTHORS Hosseinipour,M.C., van Oosterhout,J.J., Weigel,R., Phiri,S.,
Kamwendo,D., Parkin,N., Fiscus,S.A., Nelson,J.A., Eron,J.J. and
Kumwenda,J.
TITLE The public health approach to identify antiretroviral therapy
failure: high-level nucleoside reverse transcriptase inhibitor
resistance among Malawians failing first-line antiretroviral
therapy
JOURNAL AIDS 23 (9), 1127-1134 (2009)
PUBMED 19417582
REFERENCE 2 (bases 1 to 288)
Show all sequences for reference 2
AUTHORS Nelson,J.A.E.
TITLE Direct Submission
JOURNAL Submitted (02-JUN-2009) Microbiology and Immunology, University of
North Carolina at Chapel Hill, CB 7290, Chapel Hill, NC 27599, USA
FEATURES Location/Qualifiers
source 1..288
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="patient 9359"
/isolation_source="plasma"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="Malawi"
/collection_date="31-Jul-2006"
/note="subtype: C"
gene <1..>288
/gene="pol"
CDS <1..>288
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="protease"
/protein_id="ACT33815.1"
/db_xref="GI:253720898"
/translation="TLWQRPLVTIKVGGQTREALLDTGADDTVLEEINLPGKWKPKMI
GGIGGFIKVRQYDQIVIEICGKKAXGSVLIGPTPVNIIGRNMLTQLGCTLNF"
BASE COUNT 107 a 42 c 66 g 71 t 2 other
ORIGIN
1 actctttggc aacgacccct tgtcacaata aaagtagggg gccaaacaag ggaggctctc
61 ttagacacag gagcagatga tacagtatta gaagaaataa atttgccagg aaaatggaaa
121 ccaaaaatga tagggggaat tggaggtttt atcaaagtaa gacagtatga tcaaatagtt
181 atagaaattt gtggaaaaaa ggctrtaggt tcagtattaa tagggcctac acctgtcaac
241 ataattggaa ggaatatgtt gactcarctt ggatgcacac taaatttt
//
last modified: Tue May 31 10:56 2022