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LOCUS GQ228259 288 bp RNA linear VRL 15-JUL-2009
DEFINITION HIV-1 isolate patient 9347 from Malawi protease (pol) gene, partial
cds
ACCESSION GQ228259
VERSION GQ228259.1 GI:253720893
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 288)
Show all sequences for reference 1
AUTHORS Hosseinipour,M.C., van Oosterhout,J.J., Weigel,R., Phiri,S.,
Kamwendo,D., Parkin,N., Fiscus,S.A., Nelson,J.A., Eron,J.J. and
Kumwenda,J.
TITLE The public health approach to identify antiretroviral therapy
failure: high-level nucleoside reverse transcriptase inhibitor
resistance among Malawians failing first-line antiretroviral
therapy
JOURNAL AIDS 23 (9), 1127-1134 (2009)
PUBMED 19417582
REFERENCE 2 (bases 1 to 288)
Show all sequences for reference 2
AUTHORS Nelson,J.A.E.
TITLE Direct Submission
JOURNAL Submitted (02-JUN-2009) Microbiology and Immunology, University of
North Carolina at Chapel Hill, CB 7290, Chapel Hill, NC 27599, USA
FEATURES Location/Qualifiers
source 1..288
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="patient 9347"
/isolation_source="plasma"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="Malawi"
/collection_date="07-Jul-2006"
/note="subtype: C"
gene <1..>288
/gene="pol"
CDS <1..>288
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="protease"
/protein_id="ACT33813.1"
/db_xref="GI:253720894"
/translation="TLWQRPLVSIKVGGQVKEALLDTGADDTVLEEINLPGKWKPKMI
GGIGGFIKVRQYDQILIEICGKKAIGTVLVGPTPVNIIGRNMLTQIGCTLNF"
BASE COUNT 108 a 39 c 68 g 72 t 1 other
ORIGIN
1 actctttggc aacgaccact tgtctcaata aaagtagggg gtcaggtaaa ggaggctctc
61 ttagacacag gagcagatga tacagtatta gaagaaataa atttgccagg aaaatggaaa
121 ccaaaaatga taggaggaat tggaggtttt atcaaagtaa gacaatatga tcaaatactt
181 atagaaattt gtgggaaaaa ggctataggt acagtattag tagggcctac acctgtcaac
241 ataattggaa ggaacatgtt gactcagatt ggatgyacgc taaatttt
//
last modified: Tue May 31 10:56 2022