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LOCUS FR666694 1652 bp RNA linear VRL 20-JUL-2010
DEFINITION HIV-1 M:U 07CD1874 partial gene for polyprotein, genomic RNA
ACCESSION FR666694
VERSION FR666694.1 GI:301016599
KEYWORDS .
SOURCE HIV-1 M:U:07CD1874
ORGANISM HIV-1 M:U:07CD1874 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1
Show all sequences for reference 1
AUTHORS Djoko,C.F., Rimoin,A.W., Vidal,N., Tamoufe,U., Wolfe,N.D.,
Butel,C., Lebreton,M., Tshala,F.M., Kayembe,P.K., Muyembe,J.J.,
Edidi-Basepeo,S., Pike,B.L., Fair,J.N., Mbacham,W.F., Saylors,K.E.,
Mpoudi-Ngole,E., Delaporte,E., Grillo,M. and Peeters,M.
TITLE High HIV type 1 group M pol diversity and low rate of
antiretroviral resistance mutations among the uniformed services in
Kinshasa, Democratic Republic of the Congo.
JOURNAL AIDS Res. Hum. Retroviruses. 27(3); 323-9 (2011)
PUBMED 20954909
REFERENCE 2 (bases 1 to 1652)
Show all sequences for reference 2
AUTHORS Djoko,C.F.
TITLE Direct Submission
JOURNAL Submitted (12-JUL-2010) Djoko C.F., Laboratory, GVFI, Intendance
Round About, 7039, CAMEROON
FEATURES Location/Qualifiers
source 1..1652
/organism="HIV-1 M:U:07CD1874"
/mol_type="genomic RNA"
/isolate="U_07CD1874"
/db_xref="taxon:864278"
/country="Democratic Republic of the Congo:Kinshasa"
/collection_date="2007"
/note="group:M"
gene <243..>1652
/gene="gag-pol"
CDS <243..>1652
/gene="gag-pol"
/codon_start="1"
/transl_table="1"
/product="gag-pol fusion polyprotein precursor"
/protein_id="CBV35875.1"
/db_xref="GI:301016600"
/translation="PQITLWQRPVVTIKVGGQLREALLDTGADDTVLEDINLPGKWKP
KMIGGIGGFIKVRQYEQVLIEICGQKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPIS
PIETVPVKLKPGMDGPKVKQWPLTEEKIKALTEICXDMEKEGKISKIGPDNPYNTPVF
VIKKKDSTKWRKLVDFRELNKRTQDFWEIQLGIPHPAGLKKKKSVTVIDVGDAYFSVP
LHEEFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRAKNPE
MVIYQYMDDLYVGSDLEIGQHRAKIEELREHLLKWGFTTPDKKHQKEPPFLWMGYELH
PDKWTVQXIQLPEKSSWTVNDIQKLVGKLNWASQIYPGIRVKHLCRLLRGAKALTDIV
TLTKEAELELEENREILKEPVHGVYYDPSKDLIAEIQKQGNDQWTYQIYQEPYKNLKT
GKYAKVRSAHTNDXKQLTEA"
mat_peptide 243..539
/gene="gag-pol"
/product="protease"
mat_peptide 540..>1652
/gene="gag-pol"
/product="reverse transcriptase"
BASE COUNT 632 a 274 c 354 g 358 t 34 other
ORIGIN
1 ggacaccaaa tgaaagactg cactgaaaga caggctaatt ttttagggaa aatctggcct
61 tccaacarrg ggaggccagg gaattttctt cagagcagac cagarccaac agccccacca
121 gcagagagga gcagacyaga gccaacagcy ccaccagygg agagcttcgg gtttggagag
181 gagryarccy ccycyccgaa tcaggagcag aagggcaagg aactgtatcc tcccttaacy
241 tccctcaaat cactctttgg caacgaccag tagtcacaat aaaagtaggg ggacagttaa
301 gggaagctct attagataca ggagcagatg atacagtatt agaagacata aatttaccag
361 ggaaatggaa accaaaaatg atagggggaa ttggaggttt tatcaaagta agacaatatg
421 agcaagtact catagaaatt tgtgggcaaa aagctatagg tacagtatta gtaggaccta
481 cgcctgtcaa cataattggg aggaatctgt tgactcarat tggwtgcact ttaaattttc
541 caattagtcc tattgaaact gtaccagtaa aattraarcc aggaatggat ggcccaaarg
601 ttaaacaatg gccattgaca gaagaaaaaa taaaagcatt aacagaaata tgtrcagata
661 tggaaaagga aggraaaatt tcaaaaattg ggcctgacaa tccatacaat actccagtat
721 ttgtcataaa gaaaaaagac agtactaagt ggagaaaatt agtagatttc agagaactta
781 ataagagaac tcaagatttt tgggaaattc aattaggaat accacatcct gcagggttaa
841 aaaagaaaaa atcagtaaca gtaatagatg tgggagatgc atatttttca gttccattac
901 atgaggaatt caggaagtac actgcattca ccatacctag tatcaataat gagacaccag
961 gaattaggta tcagtacaat gtacttccac agggatggaa aggatcacca gcaatattcc
1021 aaagcagcat gacaaaaatt ttagagcctt ttagagcaaa aaatccagag atggtcatct
1081 accaatacat ggatgacttg tatgtagggt ctgacttaga aatagggcag catagggcaa
1141 aaatagaaga attaagagaa catttattga artggggatt tactacacca gacaaaaagc
1201 atcagaaaga acccccattt ctttggatgg ggtatgaact ccatcctgac aaatggacag
1261 tgcagrctat acarttgcct gaaaagagta gctggactgt caatgatata cagaagttag
1321 tgggaaaact aaattgggca agtcagattt atccaggaat tagagtaaar cayttatgta
1381 gactccttag gggagcyaaa gcaytaacag acatagtgac actgaccaaa gaagcagagt
1441 tagaattgga agagaacagg garattytaa aagaaccagt acatggggtr tattatgacc
1501 catcaaaaga tttaatagca gaaatacaga aacaagggaa tgatcartgg acatatcaaa
1561 tttatcaaga gccatataaa aatctgaaaa caggaaagta tgcaaaagta aggtctgccc
1621 atactaatga trtaaaacar ttaacagarg ca
//
last modified: Tue May 31 10:56 2022