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LOCUS	    FR666694		    1652 bp    RNA     linear	VRL 20-JUL-2010
DEFINITION  HIV-1 M:U 07CD1874 partial gene for polyprotein, genomic RNA
ACCESSION   FR666694
VERSION     FR666694.1 GI:301016599
KEYWORDS    .
SOURCE	    HIV-1 M:U:07CD1874
  ORGANISM  HIV-1 M:U:07CD1874 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1
            Show all sequences for reference 1
  AUTHORS   Djoko,C.F., Rimoin,A.W., Vidal,N., Tamoufe,U., Wolfe,N.D.,
	    Butel,C., Lebreton,M., Tshala,F.M., Kayembe,P.K., Muyembe,J.J.,
	    Edidi-Basepeo,S., Pike,B.L., Fair,J.N., Mbacham,W.F., Saylors,K.E.,
	    Mpoudi-Ngole,E., Delaporte,E., Grillo,M. and Peeters,M.
  TITLE     High HIV type 1 group M pol diversity and low rate of
	    antiretroviral resistance mutations among the uniformed services in
	    Kinshasa, Democratic Republic of the Congo.
  JOURNAL   AIDS Res. Hum. Retroviruses. 27(3); 323-9 (2011)
  PUBMED    20954909
REFERENCE   2 (bases 1 to 1652)
            Show all sequences for reference 2
  AUTHORS   Djoko,C.F.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JUL-2010) Djoko C.F., Laboratory, GVFI, Intendance
	    Round About, 7039, CAMEROON
FEATURES             Location/Qualifiers
     source	     1..1652
		     /organism="HIV-1 M:U:07CD1874"
		     /mol_type="genomic RNA"
		     /isolate="U_07CD1874"
		     /db_xref="taxon:864278"
		     /country="Democratic Republic of the Congo:Kinshasa"
		     /collection_date="2007"
		     /note="group:M"
     gene	     <243..>1652
		     /gene="gag-pol"
     CDS	     <243..>1652
		     /gene="gag-pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="gag-pol fusion polyprotein precursor"
		     /protein_id="CBV35875.1"
		     /db_xref="GI:301016600"
		     /translation="PQITLWQRPVVTIKVGGQLREALLDTGADDTVLEDINLPGKWKP
		     KMIGGIGGFIKVRQYEQVLIEICGQKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPIS
		     PIETVPVKLKPGMDGPKVKQWPLTEEKIKALTEICXDMEKEGKISKIGPDNPYNTPVF
		     VIKKKDSTKWRKLVDFRELNKRTQDFWEIQLGIPHPAGLKKKKSVTVIDVGDAYFSVP
		     LHEEFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRAKNPE
		     MVIYQYMDDLYVGSDLEIGQHRAKIEELREHLLKWGFTTPDKKHQKEPPFLWMGYELH
		     PDKWTVQXIQLPEKSSWTVNDIQKLVGKLNWASQIYPGIRVKHLCRLLRGAKALTDIV
		     TLTKEAELELEENREILKEPVHGVYYDPSKDLIAEIQKQGNDQWTYQIYQEPYKNLKT
		     GKYAKVRSAHTNDXKQLTEA"
     mat_peptide     243..539
		     /gene="gag-pol"
		     /product="protease"
     mat_peptide     540..>1652
		     /gene="gag-pol"
		     /product="reverse transcriptase"
BASE COUNT	632 a	 274 c	  354 g    358 t     34 other
ORIGIN
       1 ggacaccaaa tgaaagactg cactgaaaga caggctaatt ttttagggaa aatctggcct 
      61 tccaacarrg ggaggccagg gaattttctt cagagcagac cagarccaac agccccacca 
     121 gcagagagga gcagacyaga gccaacagcy ccaccagygg agagcttcgg gtttggagag 
     181 gagryarccy ccycyccgaa tcaggagcag aagggcaagg aactgtatcc tcccttaacy 
     241 tccctcaaat cactctttgg caacgaccag tagtcacaat aaaagtaggg ggacagttaa 
     301 gggaagctct attagataca ggagcagatg atacagtatt agaagacata aatttaccag 
     361 ggaaatggaa accaaaaatg atagggggaa ttggaggttt tatcaaagta agacaatatg 
     421 agcaagtact catagaaatt tgtgggcaaa aagctatagg tacagtatta gtaggaccta 
     481 cgcctgtcaa cataattggg aggaatctgt tgactcarat tggwtgcact ttaaattttc 
     541 caattagtcc tattgaaact gtaccagtaa aattraarcc aggaatggat ggcccaaarg 
     601 ttaaacaatg gccattgaca gaagaaaaaa taaaagcatt aacagaaata tgtrcagata 
     661 tggaaaagga aggraaaatt tcaaaaattg ggcctgacaa tccatacaat actccagtat 
     721 ttgtcataaa gaaaaaagac agtactaagt ggagaaaatt agtagatttc agagaactta 
     781 ataagagaac tcaagatttt tgggaaattc aattaggaat accacatcct gcagggttaa 
     841 aaaagaaaaa atcagtaaca gtaatagatg tgggagatgc atatttttca gttccattac 
     901 atgaggaatt caggaagtac actgcattca ccatacctag tatcaataat gagacaccag 
     961 gaattaggta tcagtacaat gtacttccac agggatggaa aggatcacca gcaatattcc 
    1021 aaagcagcat gacaaaaatt ttagagcctt ttagagcaaa aaatccagag atggtcatct 
    1081 accaatacat ggatgacttg tatgtagggt ctgacttaga aatagggcag catagggcaa 
    1141 aaatagaaga attaagagaa catttattga artggggatt tactacacca gacaaaaagc 
    1201 atcagaaaga acccccattt ctttggatgg ggtatgaact ccatcctgac aaatggacag 
    1261 tgcagrctat acarttgcct gaaaagagta gctggactgt caatgatata cagaagttag 
    1321 tgggaaaact aaattgggca agtcagattt atccaggaat tagagtaaar cayttatgta 
    1381 gactccttag gggagcyaaa gcaytaacag acatagtgac actgaccaaa gaagcagagt 
    1441 tagaattgga agagaacagg garattytaa aagaaccagt acatggggtr tattatgacc 
    1501 catcaaaaga tttaatagca gaaatacaga aacaagggaa tgatcartgg acatatcaaa 
    1561 tttatcaaga gccatataaa aatctgaaaa caggaaagta tgcaaaagta aggtctgccc 
    1621 atactaatga trtaaaacar ttaacagarg ca
//
last modified: Tue May 31 10:56 2022


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